source: branches/3.10-stable/src/test @ 7349

Name Size Rev Age Author Last Change
../
data 7349   5 years Nicklas Nordborg Fixes #2082: Fix problems with short-lived SSL certificate in TestFile?
net 7195   5 years Nicklas Nordborg References #2027: Improve inter-communication between extensions …
Base1NullPlugin.java 2.0 KB 5689   10 years Nicklas Nordborg Fixes #1612: Remove commented out code that is no longer in use Added …
Base1TestPlugin.java 4.8 KB 5689   10 years Nicklas Nordborg Fixes #1612: Remove commented out code that is no longer in use Added …
BfsExtraFileGenerator.java 2.5 KB 5319   12 years Nicklas Nordborg Merged pre-2.15 changes to the trunk: log:branches/2.15-stable@5251:5317
CopyStdin2Stdout.java 2.6 KB 5375   11 years Nicklas Nordborg References #1478 and #1479: Create BASEfile exporter/importer for the …
executeclass.bat 896 bytes 5319   12 years Nicklas Nordborg Merged pre-2.15 changes to the trunk: log:branches/2.15-stable@5251:5317
executeclass.sh 95 bytes 5319   12 years Nicklas Nordborg Merged pre-2.15 changes to the trunk: log:branches/2.15-stable@5251:5317
JarPlugin.java 1.7 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
JarPluginInterface.java 1.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
JarPluginType.java 1.0 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
nullplugin.bat 55 bytes 5444   11 years Nicklas Nordborg Fixes #1515: Make TestBase1PluginExecuter work on windows
NullPlugin.java 18.9 KB 6393   8 years Nicklas Nordborg References #1729 and #1730. The configure plugin/job dialog is now …
nullplugin.sh 104 bytes 4232   14 years Nicklas Nordborg Merged patch release 2.6.2 to the trunk. Delta 2.6.2 - 2.6.1
NullPluginInterface.java 1.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PermissionPlugin.java 3.9 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
run.bat 1.1 KB 5031   12 years Nicklas Nordborg References #1353: Update to latest version of 3-rd party software …
run.sh 1.0 KB 5031   12 years Nicklas Nordborg References #1353: Update to latest version of 3-rd party software …
set_classpath.bat 1.6 KB 4514   13 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
set_classpath.sh 1.3 KB 4514   13 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
test.bat 1.2 KB 5031   12 years Nicklas Nordborg References #1353: Update to latest version of 3-rd party software …
test.sh 1.2 KB 5031   12 years Nicklas Nordborg References #1353: Update to latest version of 3-rd party software …
TestAll.java 8.8 KB 6990   6 years Nicklas Nordborg References #1958: Add Kit item Added Kit item in the core layer and …
TestAnalyzeUtil.java 8.8 KB 5748   10 years Nicklas Nordborg References #1153: Handling short read transcript sequence data The …
TestAnnotation.java 18.7 KB 7283   5 years Nicklas Nordborg References #2049: Project-specific annotations Updated the …
TestAnnotationFlatFileImporter.java 8.2 KB 6921   7 years Nicklas Nordborg References #1941: Store experimental factor values as part experiments …
TestAnnotationType.java 10.6 KB 7284   5 years Nicklas Nordborg Found an annotation type that was not removed after testing.
TestAnnotationTypeCategory.java 7.0 KB 7099   6 years Nicklas Nordborg References #1987: Batch importer for annotation types Added a section …
TestAnyToAny.java 9.2 KB 6684   7 years Nicklas Nordborg Merge changes between 3.4-beta-1 to 3.4.0 to the trunk.
TestArrayBatch.java 5.5 KB 5696   10 years Nicklas Nordborg References #1153: Handling short read transcript sequence data …
TestArrayDesign.java 19.0 KB 6870   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
TestArrayDesignBlock.java 4.5 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
TestArraySlide.java 5.6 KB 5696   10 years Nicklas Nordborg References #1153: Handling short read transcript sequence data …
testbase1plugin.bat 271 bytes 5444   11 years Nicklas Nordborg Fixes #1515: Make TestBase1PluginExecuter work on windows
testbase1plugin.sh 174 bytes 4720   13 years Nicklas Nordborg Merged patch release 2.9.2 to the trunk.
TestBase1PluginExecuter.java 11.5 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
TestBaseFileExporterImporter.java 8.4 KB 5374   11 years Nicklas Nordborg References #1479: Create BASEfile importer for the external program …
TestBasicAnalysis.java 29.8 KB 5713   10 years Nicklas Nordborg References #1604: Support for multiple files of the same type in a …
TestBfs.java 13.2 KB 5221   12 years Nicklas Nordborg References #1444: Implement generic BFS writers and readers/parsers …
TestBfsExporterImporter.java 19.5 KB 7120   6 years Nicklas Nordborg References #2001: The annotation importer should only replace existing …
TestBioPlate.java 15.4 KB 6100   9 years Nicklas Nordborg References #1707: Make it possible for a derived bioassay to have …
TestBioPlateEvent.java 13.8 KB 6100   9 years Nicklas Nordborg References #1707: Make it possible for a derived bioassay to have …
TestBioPlateType.java 4.7 KB 5456   11 years Nicklas Nordborg References #1532: Add bioplate type to bioplates Added …
TestBioSource.java 4.8 KB 5696   10 years Nicklas Nordborg References #1153: Handling short read transcript sequence data …
TestChangeHistory.java 8.9 KB 7167   5 years Nicklas Nordborg References #2013: Add support for logging when items are viewed Added …
TestClient.java 4.9 KB 6424   8 years Nicklas Nordborg References #1599: Convert authentication plug-in system to an …
TestClientDefaultSetting.java 5.2 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestContext.java 3.9 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
TestDataFileType.java 7.8 KB 5652   10 years Nicklas Nordborg References #1153: Handling short read transcript sequence data …
TestDbControl.java 4.3 KB 5058   12 years Nicklas Nordborg References #108: Logging the change history of an item * We must …
TestDbInfo.java 1.3 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
TestDerivedBioAssay.java 13.8 KB 6100   9 years Nicklas Nordborg References #1707: Make it possible for a derived bioassay to have …
TestDirectory.java 9.0 KB 6520   7 years Nicklas Nordborg Merge changes between 3.3-beta-2 and 3.3.0 to trunk.
TestDirty.java 5.0 KB 5748   10 years Nicklas Nordborg References #1153: Handling short read transcript sequence data The …
TestDiskUsage.java 2.6 KB 5011   12 years Nicklas Nordborg Fixes #1341: Implement DiskUsage?.getUsingItems()
TestDropIndexes.java 1.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
TestEncoderDecoder.java 2.4 KB 5193   12 years Nicklas Nordborg References #1444: Implement generic BFS writers and readers/parsers …
TestExperiment.java 11.2 KB 5748   10 years Nicklas Nordborg References #1153: Handling short read transcript sequence data The …
TestExtensions.java 9.8 KB 7190   5 years Nicklas Nordborg References #2027: Improve inter-communication between extensions …
TestExternalProgramExecutor.java 14.1 KB 5384   11 years Nicklas Nordborg References #1498: Investigate and fix issues found by FindBugs? Fixes …
TestExtract.java 17.2 KB 6775   7 years Nicklas Nordborg References #1325: Lists of items Added transformer factories for …
TestExtraValueType.java 4.4 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestFile.java 13.2 KB 6576   7 years Nicklas Nordborg Merged patch release 3.3.2 to the trunk.
TestFileServer.java 7.6 KB 7349   5 years Nicklas Nordborg Fixes #2082: Fix problems with short-lived SSL certificate in TestFile?
TestFlatFileParser.java 9.1 KB 5759   10 years Nicklas Nordborg Fixes #1623: Create reporter importer for GTF files
TestFormula.java 4.8 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestGalExporter.java 3.7 KB 5319   12 years Nicklas Nordborg Merged pre-2.15 changes to the trunk: log:branches/2.15-stable@5251:5317
TestGenericOverview.java 12.3 KB 6100   9 years Nicklas Nordborg References #1707: Make it possible for a derived bioassay to have …
TestGlobalDefaultSetting.java 4.8 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestGroup.java 9.2 KB 5368   11 years Nicklas Nordborg References #1459: Named permissions keys that store predefined …
TestGtfImporters.java 8.1 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
TestGtfInputStream.java 2.1 KB 6459   8 years Nicklas Nordborg Fixes #1808: Support for comment lines in GTF parser
TestHardware.java 4.6 KB 5630   11 years Nicklas Nordborg References #1597: Subtypes of items Added Subtypable interface and …
TestHelp.java 6.0 KB 5689   10 years Nicklas Nordborg Fixes #1612: Remove commented out code that is no longer in use Added …
TestIlluminaImporter.java 7.3 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
TestIntensityCalculatorPlugin.java 4.0 KB 5319   12 years Nicklas Nordborg Merged pre-2.15 changes to the trunk: log:branches/2.15-stable@5251:5317
TestItemImporter.java 24.9 KB 7166   5 years Nicklas Nordborg References #2013: Add support for logging when items are viewed …
TestItemKey.java 4.1 KB 5368   11 years Nicklas Nordborg References #1459: Named permissions keys that store predefined …
TestItemList.java 14.0 KB 6965   6 years Nicklas Nordborg Removing unused imports and fixes warnings from eclipse.
TestItemSubtype.java 5.4 KB 5696   10 years Nicklas Nordborg References #1153: Handling short read transcript sequence data …
TestJarClassLoader.java 5.3 KB 7195   5 years Nicklas Nordborg References #2027: Improve inter-communication between extensions …
TestJep.java 5.0 KB 5320   12 years Nicklas Nordborg Fixes #1471: Implement equals() and hashCode() in all QueryElement?
TestJob.java 10.0 KB 6988   6 years Nicklas Nordborg Fixes #1959: Add support for password-type parameters to plug-ins …
TestJobAgent.java 13.6 KB 6433   8 years Nicklas Nordborg References #1796: Improve support for jobs running on external servers …
TestKit.java 6.0 KB 6998   6 years Nicklas Nordborg References #1958: Add Kit item Implemented a Kit batch importer …
TestLowessNormalization.java 4.0 KB 5319   12 years Nicklas Nordborg Merged pre-2.15 changes to the trunk: log:branches/2.15-stable@5251:5317
TestMACalculator.java 3.5 KB 6372   8 years Nicklas Nordborg Merged patch release 3.2.4 to the trunk.
TestMedianRatioNormalization.java 4.2 KB 5319   12 years Nicklas Nordborg Merged pre-2.15 changes to the trunk: log:branches/2.15-stable@5251:5317
TestMessage.java 4.5 KB 5442   11 years Nicklas Nordborg Fixes #1524: Send messages as emails
TestMetadata.java 6.6 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
TestMimeType.java 4.2 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestNews.java 4.8 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestNumberFormat.java 5.0 KB 5776   10 years Nicklas Nordborg Fixes #1633: NumberFormatException? when parsing NaN values
TestPackedFileExporter.java 11.0 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
TestParameterType.java 5.5 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
TestPath.java 5.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
TestPermissionTemplate.java 8.1 KB 6100   9 years Nicklas Nordborg References #1707: Make it possible for a derived bioassay to have …
TestPhysicalBioAssay.java 7.7 KB 5739   10 years Nicklas Nordborg References #1153: Handling short read transcript sequence data …
TestPlate.java 10.4 KB 5630   11 years Nicklas Nordborg References #1597: Subtypes of items Added Subtypable interface and …
TestPlateFlatFileImporter.java 6.5 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
TestPlateGeometry.java 5.3 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestPlateMapping.java 10.0 KB 5343   12 years Nicklas Nordborg References #1442: BioPlate? events First attempt at a framework that …
TestPlateType.java 7.0 KB 5630   11 years Nicklas Nordborg References #1597: Subtypes of items Added Subtypable interface and …
TestPlatform.java 11.3 KB 5713   10 years Nicklas Nordborg References #1604: Support for multiple files of the same type in a …
TestPluginConfiguration.java 7.4 KB 6988   6 years Nicklas Nordborg Fixes #1959: Add support for password-type parameters to plug-ins …
TestPluginDefinition.java 10.1 KB 6433   8 years Nicklas Nordborg References #1796: Improve support for jobs running on external servers …
TestPluginType.java 4.1 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestPresets.java 2.1 KB 4514   13 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
TestPrintMapFlatFileImporter.java 5.1 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
TestProject.java 13.7 KB 7245   5 years Nicklas Nordborg References #2049: Project-specific annotations Implemented a test …
TestProjectKey.java 4.2 KB 5689   10 years Nicklas Nordborg Fixes #1612: Remove commented out code that is no longer in use Added …
TestProtocol.java 6.5 KB 5630   11 years Nicklas Nordborg References #1597: Subtypes of items Added Subtypable interface and …
TestQuantity.java 4.1 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestQuota.java 8.7 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestQuotaType.java 2.8 KB 6870   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
TestRawBioAssay.java 19.7 KB 7151   6 years Nicklas Nordborg References #2004: Raw data query for multiple raw bioassays Added …
TestRawDataFlatFileImporter.java 8.7 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
TestReporter.java 7.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
TestReporterCloneTemplate.java 9.0 KB 5886   10 years Nicklas Nordborg References #1616: Clone reporter information to per-experiment tables …
TestReporterFlatFileImporter.java 7.5 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
TestReporterList.java 11.2 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestReporterMapFlatFileImporter.java 9.8 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
TestReporterType.java 3.9 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestRole.java 6.0 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestRoleKey.java 4.5 KB 5689   10 years Nicklas Nordborg Fixes #1612: Remove commented out code that is no longer in use Added …
TestSample.java 15.7 KB 6775   7 years Nicklas Nordborg References #1325: Lists of items Added transformer factories for …
TestSession.java 2.2 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
TestSessionControl.java 4.4 KB 7159   6 years Nicklas Nordborg References #2011: Check that session id and client id match every time …
TestSoftware.java 4.6 KB 6870   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
TestSpotImages.java 6.9 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
TestTag.java 4.8 KB 6082   9 years Nicklas Nordborg References #1707: Make it possible for a derived bioassay to have …
TestTrashcan.java 2.5 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
TestUnit.java 9.1 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestUpdateIndexes.java 1.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
TestUser.java 9.9 KB 5827   10 years Nicklas Nordborg References #1641: Use bcrypt for storing passwords instead of MD5 …
TestUserClientSetting.java 5.4 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestUserDefaultSetting.java 5.0 KB 5340   12 years Nicklas Nordborg Fixes #1486: Add call to getUsingItems() in all TestFoo?.test_delete() …
TestUtil.java 7.1 KB 6424   8 years Nicklas Nordborg References #1599: Convert authentication plug-in system to an …
TestXMLUtil.java 2.3 KB 6473   7 years Nicklas Nordborg References #1809: Upgrade 3-rd party libraries Updated JDOM to 2.0.5. …
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