source:
branches/3.15-stable/src/core/net/sf/basedb/core
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7725
| Name | Size | Rev | Age | Author | Last Change |
|---|---|---|---|---|---|
| ../ | |||||
| authentication | | 7690 | 4 years | More javadoc problems. Most of them related to additional checks that … | |
| data | | 7638 | 4 years | References #2136: Remove support for spot images Removed things … | |
| dbengine | | 7519 | 4 years | References #2130: Upgrade 3-rd party libraries Updates to make sure … | |
| doc-files | | 1538 | 17 years | Implemented delete operation for BioAssaySet?, Transformation and VirtualDb? | |
| dtd | | 7496 | 5 years | References #2125: Add support for hidden extended properties It is … | |
| hibernate | | 7522 | 4 years | References #2130: Upgrade 3-rd party libraries Updated to Hibernate … | |
| log | | 7642 | 4 years | References #2137: Remove some of the deprecated code Removed things … | |
| migrate | | 5896 | 11 years | References #1630: Migrate from MySQL to PostgreSQL Refactored … | |
| plugin | | 7605 | 4 years | References #2151: Pre-compile all JSP pages before releases Getting … | |
| query | | 7643 | 4 years | References #2137: Remove some of the deprecated code Removed things … | |
| signal | | 7605 | 4 years | References #2151: Pre-compile all JSP pages before releases Getting … | |
| snapshot | | 7689 | 4 years | Fixes javadoc problems. | |
| templates | | 7075 | 7 years | References #1979: Upgrade to Hibernate 5 Reintegrates changes made in … | |
| xsd | | 7075 | 7 years | References #1979: Upgrade to Hibernate 5 Reintegrates changes made in … | |
| AbsoluteProgressReporter.java | 1.5 KB | 4517 | 15 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| AbstractBatcher.java | 5.6 KB | 6468 | 9 years | References #1742: Upgrade to Hibernate 4.x Updated to Hibernate … | |
| AbstractEntityQuery.java | 9.3 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| AbstractHqlQuery.java | 12.7 KB | 7461 | 5 years | Merge pre-3.12 changes to the trunk. | |
| AbstractQuery.java | 25.3 KB | 6875 | 8 years | References #1939: Fix javac compiler warnings Fixes warnings after … | |
| AbstractResultList.java | 3.6 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| AbstractSqlQuery.java | 14.3 KB | 7433 | 5 years | Fixes #2103: Can't filter on "Up to date" column for cloned reporters … | |
| AccessControlled.java | 2.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| AccountExpiredException.java | 1.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| AlreadyLoggedInException.java | 1.3 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Annotatable.java | 3.1 KB | 5983 | 11 years | References #1605: Inherit annotations from a child path Added support … | |
| AnnotatableProxy.java | 1.9 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| AnnotatedItem.java | 2.5 KB | 7126 | 7 years | References #2000: Batch API for annotation handling Adding a call to … | |
| Annotation.java | 29.8 KB | 7643 | 4 years | References #2137: Remove some of the deprecated code Removed things … | |
| AnnotationBatcher.java | 39.5 KB | 7522 | 4 years | References #2130: Upgrade 3-rd party libraries Updated to Hibernate … | |
| AnnotationBetweenRestriction.java | 6.3 KB | 7643 | 4 years | References #2137: Remove some of the deprecated code Removed things … | |
| AnnotationInRestriction.java | 4.0 KB | 7643 | 4 years | References #2137: Remove some of the deprecated code Removed things … | |
| AnnotationRestriction.java | 12.3 KB | 7643 | 4 years | References #2137: Remove some of the deprecated code Removed things … | |
| AnnotationSet.java | 42.0 KB | 7689 | 4 years | Fixes javadoc problems. | |
| AnnotationSimpleRestriction.java | 11.2 KB | 7643 | 4 years | References #2137: Remove some of the deprecated code Removed things … | |
| AnnotationType.java | 52.0 KB | 7615 | 4 years | References #2149: Batch item importers should be able to use an … | |
| AnnotationTypeCategory.java | 4.7 KB | 7308 | 6 years | Fixes #2061: Add API for setting registration date on items Added … | |
| AnyToAny.java | 21.3 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| Application.java | 33.6 KB | 7643 | 4 years | References #2137: Remove some of the deprecated code Removed things … | |
| ArrayBatch.java | 10.3 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| ArrayDesign.java | 24.9 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| ArrayDesignBlock.java | 11.1 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| ArrayDesignPlate.java | 5.3 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| ArraySlide.java | 10.2 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| AuthenticationContext.java | 4.3 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| BaseException.java | 2.7 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| BasicBatcher.java | 18.8 KB | 6468 | 9 years | References #1742: Upgrade to Hibernate 4.x Updated to Hibernate … | |
| BasicChildItem.java | 3.2 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| BasicItem.java | 20.8 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| BatchedPropertyInfo.java | 1.5 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Batcher.java | 2.7 KB | 7551 | 4 years | References #2129: Preparations for Java 11 support Added the … | |
| BatchUtil.java | 16.2 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| BioAssay.java | 13.8 KB | 7126 | 7 years | References #2000: Batch API for annotation handling Adding a call to … | |
| BioAssaySet.java | 52.4 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| BioMaterial.java | 6.4 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| BioMaterialEvent.java | 34.4 KB | 7605 | 4 years | References #2151: Pre-compile all JSP pages before releases Getting … | |
| BioMaterialEventSource.java | 6.0 KB | 6600 | 8 years | Merge BASE 3.3.3 to the trunk. There is a test failure in "TestFile?" … | |
| BioPlate.java | 17.1 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| BioPlateEvent.java | 14.8 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| BioPlateEventParticipant.java | 8.2 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| BioPlateEventType.java | 8.0 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| BioPlateType.java | 10.4 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| BioSource.java | 6.3 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| BioWell.java | 13.8 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| BlockInfo.java | 3.8 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| BooleanParameterType.java | 2.4 KB | 6372 | 9 years | Merged patch release 3.2.4 to the trunk. | |
| ChangeHistory.java | 14.9 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| ChildItem.java | 4.1 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| Client.java | 10.8 KB | 7403 | 5 years | References #2097: Implement support for device verification Added a … | |
| ClientDefaultSetting.java | 5.8 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| ClonableProperty.java | 11.0 KB | 7496 | 5 years | References #2125: Add support for hidden extended properties It is … | |
| ClonableReporterQuery.java | 1.9 KB | 5897 | 11 years | References #1616: Clone reporter information to per-experiment tables … | |
| Coloring.java | 5.3 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| CommonItem.java | 2.5 KB | 7016 | 7 years | References #1966: The user that delete an item should see the item in … | |
| Config.java | 10.2 KB | 7527 | 4 years | References #2130: Upgrade 3-rd party libraries Updated Apache Commons … | |
| ConfigurationException.java | 1.6 KB | 5384 | 13 years | References #1498: Investigate and fix issues found by FindBugs? Fixes … | |
| ConnectionClosedException.java | 1.2 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ContextKey.java | 2.0 KB | 6898 | 8 years |
References #1940: Fix javadoc warnings
Added Xdoclint:syntax and …
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| Controlled.java | 1.3 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| DatabaseException.java | 1.9 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| DataCube.java | 20.2 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| DataCubeColumn.java | 5.4 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| DataCubeExtraValue.java | 7.1 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| DataCubeFilter.java | 5.8 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| DataCubeLayer.java | 5.7 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| DataFileType.java | 19.0 KB | 7605 | 4 years | References #2151: Pre-compile all JSP pages before releases Getting … | |
| DataQuery.java | 3.5 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| DataResultIterator.java | 3.5 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| DateFormatException.java | 1.4 KB | 5430 | 13 years | References #1512: Add support for datetime annotation types The … | |
| DateParameterType.java | 2.9 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| DateUtil.java | 6.4 KB | 7514 | 4 years | References #2129: Preparations for Java 11 support Get rid of … | |
| DbControl.java | 39.9 KB | 7622 | 4 years | References #2138: Officially support Java 11 (or later) Added … | |
| DerivedBioAssay.java | 30.2 KB | 7642 | 4 years | References #2137: Remove some of the deprecated code Removed things … | |
| DetachedItemException.java | 1.4 KB | 6881 | 8 years | References #1940: Fix javadoc warnings Enabled … | |
| DeviceNotVerifiedException.java | 1.9 KB | 7408 | 5 years | References #2097: Implement support for device verification The major … | |
| Directory.java | 26.0 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| DisallowedValueException.java | 1.8 KB | 4517 | 15 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| DiskConsumable.java | 2.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| DiskUsage.java | 6.9 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| DiskUsageStatistics.java | 8.7 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| DoubleParameterType.java | 4.7 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| DropDynamicTableAction.java | 1.9 KB | 5877 | 11 years | References #1616: Clone reporter information to per-experiment tables … | |
| DynamicExtraValueQuery.java | 2.8 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| DynamicJoin.java | 8.1 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| DynamicPositionQuery.java | 8.8 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| DynamicPositionQueryJoiners.java | 6.1 KB | 6026 | 11 years | References #1673: Allow sorting table listings on single-valued … | |
| DynamicQuery.java | 4.7 KB | 7433 | 5 years | Fixes #2103: Can't filter on "Up to date" column for cloned reporters … | |
| DynamicRawDataQuery.java | 9.7 KB | 7433 | 5 years | Fixes #2103: Can't filter on "Up to date" column for cloned reporters … | |
| DynamicReporterQuery.java | 9.3 KB | 7433 | 5 years | Fixes #2103: Can't filter on "Up to date" column for cloned reporters … | |
| DynamicRestriction.java | 3.6 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| DynamicResultIterator.java | 5.0 KB | 6444 | 9 years | Fixes #1801: Switch to slf4j | |
| DynamicSpotQuery.java | 11.8 KB | 6465 | 9 years | Fixes #1798: Remove web services support | |
| DynamicSpotQueryJoiners.java | 7.5 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| Experiment.java | 28.5 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| ExtendedProperties.java | 11.0 KB | 7496 | 5 years | References #2125: Add support for hidden extended properties It is … | |
| ExtendedProperty.java | 8.9 KB | 7496 | 5 years | References #2125: Add support for hidden extended properties It is … | |
| ExtendedPropertyAccessor.java | 6.0 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| ExtendedPropertyLinker.java | 2.1 KB | 4517 | 15 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| Extract.java | 11.4 KB | 7587 | 4 years | Merged patch release 3.14.1 to the trunk. | |
| ExtraValue.java | 17.0 KB | 6881 | 8 years | References #1940: Fix javadoc warnings Enabled … | |
| ExtraValueExpression.java | 3.2 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| ExtraValueJoin.java | 7.0 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| ExtraValueType.java | 11.5 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| Feature.java | 3.2 KB | 6898 | 8 years |
References #1940: Fix javadoc warnings
Added Xdoclint:syntax and …
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| FeatureBatcher.java | 10.1 KB | 6898 | 8 years |
References #1940: Fix javadoc warnings
Added Xdoclint:syntax and …
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| FeatureCoordinate.java | 3.5 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| FeatureIdentificationMethod.java | 5.5 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| File.java | 52.0 KB | 7641 | 4 years | References #2136: Remove support for spot images Removed the … | |
| FileAttachable.java | 1.7 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| FileParameterType.java | 2.3 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| FileServer.java | 24.3 KB | 7472 | 5 years | References #2112: Add support for SSH private keys to file server … | |
| FileSet.java | 24.3 KB | 7605 | 4 years | References #2151: Pre-compile all JSP pages before releases Getting … | |
| FileSetMember.java | 7.1 KB | 6875 | 8 years | References #1939: Fix javac compiler warnings Fixes warnings after … | |
| FileStoreEnabled.java | 2.5 KB | 4517 | 15 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| FileStoreUtil.java | 12.2 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| filter-def.hbm.xml | 5.9 KB | 7075 | 7 years | References #1979: Upgrade to Hibernate 5 Reintegrates changes made in … | |
| FilterBatcher.java | 10.5 KB | 6469 | 9 years | References #1742: Upgrade to Hibernate 4.x Replaced calls to … | |
| FloatParameterType.java | 4.1 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| Formula.java | 25.2 KB | 7308 | 6 years | Fixes #2061: Add API for setting registration date on items Added … | |
| GlobalDefaultSetting.java | 3.5 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| Group.java | 20.5 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| GroupPermissions.java | 6.7 KB | 5368 | 13 years | References #1459: Named permissions keys that store predefined … | |
| Hardware.java | 12.2 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| HasAnnotationRestriction.java | 4.5 KB | 7643 | 4 years | References #2137: Remove some of the deprecated code Removed things … | |
| Help.java | 6.9 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| HibernateUtil.java | 77.3 KB | 7587 | 4 years | Merged patch release 3.14.1 to the trunk. | |
| HqlQueryJoiners.java | 5.2 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| Identifiable.java | 1.9 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Include.java | 2.6 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Install.java | 114.1 KB | 7654 | 4 years | References #2161: Import data from Excel files Started to implement a … | |
| IntegerParameterType.java | 4.1 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| IntegerUtil.java | 4.0 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| IntensityFormula.java | 2.4 KB | 5384 | 13 years | References #1498: Investigate and fix issues found by FindBugs? Fixes … | |
| IntensityTransform.java | 7.2 KB | 6880 | 8 years | Merge pre-3.5 changes to the trunk. | |
| InternalJobQueue.java | 19.1 KB | 7513 | 4 years | References #2129: Preparations for Java 11 support Get rid of … | |
| InvalidAnnotationException.java | 1.8 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| InvalidDataException.java | 1.9 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| InvalidPasswordException.java | 1.7 KB | 5822 | 11 years | References #1575: Add support for authenticator plug-in in external … | |
| InvalidPathException.java | 1.3 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| InvalidRelationException.java | 2.1 KB | 5623 | 12 years | References #1598: Use the extensions system for data file validators … | |
| InvalidUseOfNullException.java | 1.5 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Item.java | 29.8 KB | 7638 | 4 years | References #2136: Remove support for spot images Removed things … | |
| ItemAlreadyExistsException.java | 1.4 KB | 6881 | 8 years | References #1940: Fix javadoc warnings Enabled … | |
| ItemContext.java | 64.6 KB | 7693 | 4 years | References #2170: "None" as recently used selection Added support for … | |
| ItemInUseException.java | 2.0 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ItemKey.java | 16.9 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| ItemList.java | 44.8 KB | 7610 | 4 years | References #2151: Pre-compile all JSP pages before releases Changed … | |
| ItemModifiedException.java | 2.6 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ItemNotFoundException.java | 1.8 KB | 5822 | 11 years | References #1575: Add support for authenticator plug-in in external … | |
| ItemParameterType.java | 2.4 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| ItemProxy.java | 2.3 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| ItemQuery.java | 3.8 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| ItemResultIterator.java | 3.1 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| ItemResultList.java | 7.4 KB | 6875 | 8 years | References #1939: Fix javac compiler warnings Fixes warnings after … | |
| ItemSubtype.java | 22.5 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| ItemSubtypeFileType.java | 6.1 KB | 7311 | 6 years | Fixes #2066: Display item subtypes that are referencing a data file … | |
| Job.java | 76.8 KB | 7725 | 4 years | Fixes #2184: Marking a job as ended fails with … | |
| JobAgent.java | 17.5 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| JobAgentSettings.java | 10.1 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| Key.java | 1.1 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| Keyring.java | 28.7 KB | 7724 | 4 years | Fixes #2183: Incorrect timeout for reloading permissions | |
| Kit.java | 11.3 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| Listable.java | 975 bytes | 6740 | 8 years | References #1325: Lists of items (similar funcion as biomaterial … | |
| Location.java | 3.6 KB | 7595 | 4 years | References #2135: Remove support for secondary storage Removed … | |
| LogControl.java | 6.0 KB | 7522 | 4 years | References #2130: Upgrade 3-rd party libraries Updated to Hibernate … | |
| LoginException.java | 1.6 KB | 5822 | 11 years | References #1575: Add support for authenticator plug-in in external … | |
| LogUtil.java | 1.7 KB | 6444 | 9 years | Fixes #1801: Switch to slf4j | |
| LongParameterType.java | 4.0 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| MappingBatcher.java | 8.9 KB | 6881 | 8 years | References #1940: Fix javadoc warnings Enabled … | |
| MeanRawDataPropertyExpression.java | 3.5 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| MeasuredBioMaterial.java | 21.1 KB | 7390 | 6 years | Merge patch release 3.11.1 to the trunk. | |
| Message.java | 12.6 KB | 7725 | 4 years | Fixes #2184: Marking a job as ended fails with … | |
| Metadata.java | 24.7 KB | 6898 | 8 years |
References #1940: Fix javadoc warnings
Added Xdoclint:syntax and …
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| Migration.java | 31.6 KB | 7553 | 4 years | References #2130: Upgrade 3-rd party libraries Fixing an incorrect …[…] | |
| MimeType.java | 10.5 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| MultiPermissions.java | 18.5 KB | 7212 | 6 years | References #2034: New permission for annotating items The "Share" … | |
| Nameable.java | 3.7 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| NameableUtil.java | 2.0 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| News.java | 9.9 KB | 7392 | 6 years | References #2085: Sticky news Added sticky flag to news items in the … | |
| NotLoggedInException.java | 1.2 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| NumberOutOfRangeException.java | 4.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Operator.java | 10.8 KB | 6830 | 8 years | References #1932: Improve display of selection list in table filters … | |
| Ownable.java | 2.6 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| OwnableUtil.java | 1.5 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| OwnedItem.java | 3.8 KB | 7189 | 7 years | Merged patch release 3.9.1 to the trunk. | |
| package.html | 878 bytes | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ParameterException.java | 1.3 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ParameterInfo.java | 2.6 KB | 6988 | 7 years | Fixes #1959: Add support for password-type parameters to plug-ins … | |
| ParameterType.java | 9.5 KB | 6987 | 7 years | References #1959: Add support for password-type parameters to plug-ins … | |
| ParameterValuesImpl.java | 7.1 KB | 7605 | 4 years | References #2151: Pre-compile all JSP pages before releases Getting … | |
| PasswordParameterType.java | 2.3 KB | 6987 | 7 years | References #1959: Add support for password-type parameters to plug-ins … | |
| Path.java | 8.6 KB | 6881 | 8 years | References #1940: Fix javadoc warnings Enabled … | |
| PathParameterType.java | 3.2 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| Permission.java | 8.0 KB | 7211 | 6 years | References #2034: New permission for annotating items Decoupled the … | |
| PermissionDeniedException.java | 2.8 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| PermissionTemplate.java | 5.1 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| PhysicalBioAssay.java | 14.5 KB | 7605 | 4 years | References #2151: Pre-compile all JSP pages before releases Getting … | |
| Plate.java | 16.1 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| PlateEvent.java | 11.3 KB | 7308 | 6 years | Fixes #2061: Add API for setting registration date on items Added … | |
| PlateEventType.java | 10.5 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| PlateGeometry.java | 10.4 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| PlateMapping.java | 17.2 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| PlateType.java | 7.4 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| Platform.java | 16.4 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| PlatformFileType.java | 7.7 KB | 6898 | 8 years |
References #1940: Fix javadoc warnings
Added Xdoclint:syntax and …
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| PlatformVariant.java | 13.9 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| PluginConfiguration.java | 26.6 KB | 7513 | 4 years | References #2129: Preparations for Java 11 support Get rid of … | |
| PluginConfigurationRequest.java | 5.2 KB | 6881 | 8 years | References #1940: Fix javadoc warnings Enabled … | |
| PluginDefinition.java | 46.4 KB | 7513 | 4 years | References #2129: Preparations for Java 11 support Get rid of … | |
| PluginExecutionRequest.java | 5.4 KB | 7329 | 6 years | References #2072: Add support for pausing and resuming a job A paused … | |
| PluginParameter.java | 5.0 KB | 5218 | 13 years | Removed double 'the the' typos. | |
| PluginPermission.java | 1.0 KB | 4669 | 14 years | Merged 2.9-stable@4643:4666 to trunk. | |
| PluginRequest.java | 10.1 KB | 7605 | 4 years | References #2151: Pre-compile all JSP pages before releases Getting … | |
| PluginResponse.java | 10.3 KB | 7329 | 6 years | References #2072: Add support for pausing and resuming a job A paused … | |
| PluginSessionControl.java | 2.7 KB | 7669 | 4 years | Fixes #2167: Permission denied when plug-in is trying to clone a session | |
| PluginType.java | 10.8 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| PositionBatcher.java | 8.5 KB | 6881 | 8 years | References #1940: Fix javadoc warnings Enabled … | |
| PositionExtraValueBatcher.java | 11.9 KB | 6469 | 9 years | References #1742: Upgrade to Hibernate 4.x Replaced calls to … | |
| PredefinedQuery.java | 4.8 KB | 6875 | 8 years | References #1939: Fix javac compiler warnings Fixes warnings after … | |
| Presets.java | 8.1 KB | 6898 | 8 years |
References #1940: Fix javadoc warnings
Added Xdoclint:syntax and …
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| ProgressReporter.java | 1.4 KB | 5325 | 13 years | References #1485: File items should be able to reference external … | |
| Project.java | 38.9 KB | 7605 | 4 years | References #2151: Pre-compile all JSP pages before releases Getting … | |
| ProjectKey.java | 12.0 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| ProjectPermissions.java | 7.5 KB | 5368 | 13 years | References #1459: Named permissions keys that store predefined … | |
| ProjectSpecificAnnotationsManager.java | 16.2 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| PropertyFilter.java | 37.3 KB | 7642 | 4 years | References #2137: Remove some of the deprecated code Removed things … | |
| Protocol.java | 18.0 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| Quantity.java | 16.9 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| QueryExecutor.java | 9.8 KB | 7461 | 5 years | Merge pre-3.12 changes to the trunk. | |
| QueryRuntimeFilter.java | 2.5 KB | 6881 | 8 years | References #1940: Fix javadoc warnings Enabled … | |
| QueryRuntimeFilterFactory.java | 15.9 KB | 6875 | 8 years | References #1939: Fix javac compiler warnings Fixes warnings after … | |
| QueryRuntimeFilterManager.java | 2.8 KB | 6934 | 8 years | References #1950: Add support for any-to-any link filters in table … | |
| Quota.java | 13.7 KB | 7595 | 4 years | References #2135: Remove support for secondary storage Removed … | |
| QuotaException.java | 2.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| QuotaType.java | 5.4 KB | 7597 | 4 years | References #2135: Remove support for secondary storage Removed … | |
| RawBioAssay.java | 41.2 KB | 7638 | 4 years | References #2136: Remove support for spot images Removed things … | |
| RawBioAssayPropertyExpression.java | 4.5 KB | 7151 | 7 years | References #2004: Raw data query for multiple raw bioassays Added … | |
| RawDataBatcher.java | 22.0 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| RawDataProperty.java | 1.7 KB | 7496 | 5 years | References #2125: Add support for hidden extended properties It is … | |
| RawDataPropertyExpression.java | 5.2 KB | 6875 | 8 years | References #1939: Fix javac compiler warnings Fixes warnings after … | |
| RawDataType.java | 9.8 KB | 6465 | 9 years | Fixes #1798: Remove web services support | |
| RawDataTypes.java | 17.0 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| RawDataUtil.java | 2.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| RealJoin.java | 6.6 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| RealTable.java | 2.8 KB | 7151 | 7 years | References #2004: Raw data query for multiple raw bioassays Added … | |
| Registered.java | 1.7 KB | 7308 | 6 years | Fixes #2061: Add API for setting registration date on items Added … | |
| Removable.java | 2.7 KB | 7016 | 7 years | References #1966: The user that delete an item should see the item in … | |
| Reporter.java | 12.1 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| ReporterBatcher.java | 8.9 KB | 7496 | 5 years | References #2125: Add support for hidden extended properties It is … | |
| ReporterCloneBatcher.java | 12.9 KB | 6908 | 8 years | References #1942: Store experimental factor values as part experiments … | |
| ReporterCloneTemplate.java | 11.5 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| ReporterList.java | 22.0 KB | 7527 | 4 years | References #2130: Upgrade 3-rd party libraries Updated Apache Commons … | |
| ReporterListJoin.java | 6.8 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| ReporterPropertyExpression.java | 6.3 KB | 6875 | 8 years | References #1939: Fix javac compiler warnings Fixes warnings after … | |
| ReporterScore.java | 2.4 KB | 7014 | 7 years | Merged patch release 3.6.2 to the trunk | |
| ReporterScoreQuery.java | 2.3 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| ReporterScoreResultIterator.java | 3.0 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| ReporterType.java | 7.6 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| RequestInformation.java | 4.9 KB | 4962 | 14 years | Fixes #1329: A plug-in should be able to use a JSP page from an … | |
| Role.java | 12.0 KB | 7308 | 6 years | Fixes #2061: Add API for setting registration date on items Added … | |
| RoleKey.java | 7.7 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| RootRawBioAssay.java | 7.2 KB | 7126 | 7 years | References #2000: Batch API for annotation handling Adding a call to … | |
| Sample.java | 8.8 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| ScrollIterator.java | 2.3 KB | 7551 | 4 years | References #2129: Preparations for Java 11 support Added the … | |
| ServiceSessionControl.java | 20.6 KB | 7521 | 4 years | References #2130: Upgrade 3-rd party libraries Removed the need for a … | |
| ServicesUtil.java | 1.9 KB | 6630 | 8 years | References #1892: Implement support for extensions to add their own … | |
| Session.java | 6.9 KB | 7413 | 5 years | References #2099: Get location information from ip address Updated … | |
| SessionControl.java | 89.8 KB | 7707 | 4 years | Fixes #2176: Get name of active project and logged in user from … | |
| Setting.java | 4.5 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| Shareable.java | 3.6 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ShareableUtil.java | 9.9 KB | 5590 | 12 years | References #1589: Delete deprecated classes and methods Removed … | |
| SharedItem.java | 3.8 KB | 6875 | 8 years | References #1939: Fix javac compiler warnings Fixes warnings after … | |
| SimpleAbsoluteProgressReporter.java | 2.6 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| SimpleProgressReporter.java | 2.6 KB | 6795 | 8 years | References #1325: Lists of items Displaying a progress bar when … | |
| Software.java | 9.0 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| SpecialQuery.java | 2.5 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| SpotBatcher.java | 11.2 KB | 6469 | 9 years | References #1742: Upgrade to Hibernate 4.x Replaced calls to … | |
| SpotExtraValueBatcher.java | 11.6 KB | 6898 | 8 years |
References #1940: Fix javadoc warnings
Added Xdoclint:syntax and …
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| StringParameterType.java | 4.4 KB | 6881 | 8 years | References #1940: Fix javadoc warnings Enabled … | |
| StringTooLongException.java | 1.8 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| StringUtil.java | 8.6 KB | 6022 | 11 years | Fixes #1672: Join annotation values into a main item query There is … | |
| Subtypable.java | 1.3 KB | 5631 | 12 years | References #1597: Subtypes of items Added support for subtypes with … | |
| SubtypableRelatedItems.java | 1.5 KB | 5823 | 11 years | References #1590: Documentation cleanup Fixed javadoc warnings. | |
| SupportsPushAnnotations.java | 1.6 KB | 5983 | 11 years | References #1605: Inherit annotations from a child path Added support … | |
| SyncFilter.java | 14.9 KB | 6927 | 8 years | References #1948: Automatic re-sync of item lists used in … | |
| SystemItem.java | 2.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| SystemItems.java | 4.7 KB | 6881 | 8 years | References #1940: Fix javadoc warnings Enabled … | |
| Tag.java | 5.6 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| TimestampParameterType.java | 2.8 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| Transactional.java | 2.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| TransactionalAction.java | 1.6 KB | 5877 | 11 years | References #1616: Clone reporter information to per-experiment tables … | |
| Transformation.java | 16.3 KB | 7016 | 7 years | References #1966: The user that delete an item should see the item in … | |
| Trashcan.java | 16.2 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| Type.java | 19.9 KB | 7664 | 4 years |
References #2161: Import data from Excel files
The FlatFileParser …
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| Unit.java | 20.1 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| UnmodifiableResultList.java | 3.4 KB | 6127 | 11 years | Fixes #1725: Add missing @Override annotations Thanks to Eclipse it … | |
| UnsavedItemException.java | 2.0 KB | 4517 | 15 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| UnsupportedFileFormatException.java | 2.0 KB | 4594 | 14 years | Fixes #1145: Make the generic raw data importer support batch import | |
| Update.java | 90.2 KB | 7686 | 4 years | References #2136: Remove support for spot images Updated javadoc … | |
| UsableDataFileType.java | 1.4 KB | 5713 | 12 years | References #1604: Support for multiple files of the same type in a … | |
| User.java | 46.4 KB | 7461 | 5 years | Merge pre-3.12 changes to the trunk. | |
| UserClientSetting.java | 8.2 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| UserDefaultSetting.java | 6.2 KB | 6874 | 8 years | References #1939: Fix javac compiler warnings Get rid of generic … | |
| UserDevice.java | 6.7 KB | 7413 | 5 years | References #2099: Get location information from ip address Updated … | |
| UserPermissions.java | 6.7 KB | 5368 | 13 years | References #1459: Named permissions keys that store predefined … | |
| Validatable.java | 1.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Values.java | 4.1 KB | 7610 | 4 years | References #2151: Pre-compile all JSP pages before releases Changed … | |
| Version.java | 4.6 KB | 6898 | 8 years |
References #1940: Fix javadoc warnings
Added Xdoclint:syntax and …
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| VirtualColumn.java | 12.3 KB | 6875 | 8 years | References #1939: Fix javac compiler warnings Fixes warnings after … | |
| VirtualDb.java | 14.2 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
| VirtualTable.java | 10.7 KB | 7642 | 4 years | References #2137: Remove some of the deprecated code Removed things … | |
| Well.java | 10.8 KB | 7381 | 6 years | References #2084: Upgrade to Hibernate 5.2 Merged development branch … | |
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