source: trunk/config/dist/base.config @ 5048

# $Id: base.config.in 2932 2006-11-17 11:29:27Z nicklas $
#
# Copyright (C) 2006 Nicklas Nordborg
# Copyright (C) 2007 Nicklas Nordborg, Martin Svensson
#
# This file is part of BASE - BioArray Software Environment.
# Available at http://base.thep.lu.se/
#
# BASE is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 3
# of the License, or (at your option) any later version.
#
# BASE is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with BASE. If not, see <http://www.gnu.org/licenses/>.
# ----------------------------------------

# =======================
# Database driver section
# =======================

# -----
# MySQL
# -----
db.dialect          = org.hibernate.dialect.MySQLInnoDBDialect
db.driver           = com.mysql.jdbc.Driver
db.url              = jdbc:mysql://localhost/base2?characterEncoding=UTF-8&useCursorFetch=true&defaultFetchSize=100&useServerPrepStmts=true
db.dynamic.catalog  = base2dynamic
db.queries          = /mysql-queries.xml
#export.max.items    = 20000

# --------
# Postgres
# --------
#db.dialect          = org.hibernate.dialect.PostgreSQLDialect
#db.driver           = org.postgresql.Driver
#db.url              = jdbc:postgresql:base2
#db.dynamic.catalog  = base2
#db.dynamic.schema   = dynamic
#db.queries          = /postgres-queries.xml
#export.max.items    = 0

# -------------
# Common to all
# -------------
db.username            = base2user
db.password            = password
db.extended-properties = /extended-properties.xml
db.raw-data-types      = /raw-data-types.xml
db.batch-size          = 50
# Number of hours between cleanup of unused items in the database
# Set to 0 to disable (recommended for job agents)
db.cleanup.interval    = 24


# ======================
# Authentication section
# ======================

# ----------------
# POP3 mail server
# ----------------
#auth.driver         = net.sf.basedb.core.authentication.POP3Authenticator
#auth.init           = mail.example.com
#auth.synchronize    = 0
#auth.cachepasswords = 0
#auth.daystocache    = 0


# ==========================
# Internal job queue section
# ==========================
# If the internal job queue should be enabled or not
jobqueue.internal.enabled            = true

# Signal receiver class for sending signals to running jobs (to abort them)
jobqueue.internal.signalreceiver.class = net.sf.basedb.core.signal.LocalSignalReceiver
jobqueue.internal.signalreceiver.init  = jobqueue:0

# If plugins with useInteralJobQueue = false should be executed or not
jobqueue.internal.runallplugins      = false

# The maximum thread priority for any thread executing a plug-in
#jobqueue.internal.maxthreadpriority  = 4

# Number of seconds between checks to the job queue
jobqueue.internal.checkinterval      = 30

# NOTE! A quick job may use threads from any of the "slower" pools
# if there is place for another thread
# Number of threads to reserved for jobs that takes < 1 minute to execute
jobqueue.internal.shortest.threads   = 1
#jobqueue.internal.shortest.threadpriority = 4

# Number of threads to reserved for jobs that takes < 10 minutes to execute
jobqueue.internal.short.threads      = 1
#jobqueue.internal.short.threadpriority = 4

# Number of threads to reserved for jobs that takes < 1 hour to execute
jobqueue.internal.medium.threads     = 2
#jobqueue.internal.medium.threadpriority = 3

# Number of threads to reserved for jobs that takes > 1 hour to execute
jobqueue.internal.long.threads       = 4
#jobqueue.internal.long.threadpriority = 3

# ==========================
# External job agent section
# ==========================

# Number of seconds to cache information from a job agent before it
# is reloaded. The default value is 60 seconds.
agent.maxage=60

# The timeout in milliseconds to use when connecting to job agents to
# get information. The default value is 1000 milliseconds.
agent.connection.timeout=1000


# =========================
# Secondary storage section
# =========================
# The classname of the driver; leave empty to disable secondary storage
# secondary.storage.driver   = net.sf.basedb.core.InternalStorageController

# Initialisation options to the seconday storage controller
# The internal implementation wants a path to the secondary directory
# secondary.storage.init     = /usr/local/base2/secondary

# The interval (in seconds) between checks for new files to move
# secondary.storage.interval = 3600

# Comma-separated list of time values (hours:minutes) when the controller 
# should be executed; overrides the interval setting if present
# secondary.storage.time = 18:15,07:30

# =========================
# Change history section
# =========================

# Class name of the changelog factory; leave empty to disable the changelog
# changelog.factory = net.sf.basedb.core.log.db.DbLogManagerFactory

# If the "Change history" tab should be visible in the web interface 
# or not. It is hidden by default.
# changelog.show-in-web = false

# ===============
# General section
# ===============

# The path to the directory where uploaded files are stored
userfiles = /usr/local/base2/files

# The path to the directory where external plugins are installed
plugins.dir=/usr/local/base2/plugins

# Number of minutes to keep permission information for the logged
# in user in memory before it is reloaded from the database.
permission.timeout = 10

# Number of minutes to keep SessionControl object in the cache
# after the last use
cache.timeout = 20

# If the static cache should be disabled or enabled
# Disabling the static cache may reduce performance for
# certain operations
cache.static.disabled = false

# Timeout (in days) for items in the static cache
# Items that hasn't been accessed in the configured amount of
# of time will be removed from the cache
cache.static.max-age = 30

#Overwrite the existing help texts when updating the program
helptext.update = true

# Set to 1 to disable auto-compression of uploaded files
autocompress.disable = 0