source: trunk/config/dist/extended-properties.xml @ 4508

Last change on this file since 4508 was 4508, checked in by Jari Häkkinen, 13 years ago

Addresses #1106. Missed to change reference wherefrom retrive GPLv3 license text. And some other changes.

  • Property svn:eol-style set to native
  • Property svn:keywords set to Date Id
File size: 4.0 KB
Line 
1<?xml version="1.0" ?>
2<!DOCTYPE extended-properties SYSTEM "extended-properties.dtd" >
3<!--
4  $Id: extended-properties.xml 4508 2008-09-11 20:00:35Z jari $
5
6  Copyright (C) 2006 Nicklas Nordborg
7  Copyright (C) 2007 Nicklas Nordborg, Martin Svensson
8
9  This file is part of BASE - BioArray Software Environment.
10  Available at http://base.thep.lu.se/
11
12  BASE is free software; you can redistribute it and/or
13  modify it under the terms of the GNU General Public License
14  as published by the Free Software Foundation; either version 3
15  of the License, or (at your option) any later version.
16
17  BASE is distributed in the hope that it will be useful,
18  but WITHOUT ANY WARRANTY; without even the implied warranty of
19  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
20  GNU General Public License for more details.
21
22  You should have received a copy of the GNU General Public License
23  along with BASE. If not, see <http://www.gnu.org/licenses/>.
24-->
25<extended-properties>
26  <class name="ReporterData">
27    <property
28      name="species"
29      title="Species"
30      description="The organism from which the reporter is derived"
31      column="species"
32      type="string"
33      length="255"
34    />
35    <property
36      name="clusterId"
37      title="Cluster ID"
38      description="A unique identifier for a Unigene entry"
39      column="clusterId"
40      type="string"
41      length="255"
42      >
43      <link
44        regexp="\w+\.\d+"
45        url="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=unigene&amp;term={value}[ClusterID]"
46      />
47    </property>
48    <property
49      name="length"
50      title="Length"
51      description="The length of the sequence"
52      column="length"
53      type="int"
54    />
55    <property
56      name="sequence"
57      title="Sequence"
58      description="The nucleotide sequence of the reporter"
59      column="sequence"
60      type="string"
61      length="65535"
62    />
63    <property
64      name="vector"
65      title="Vector"
66      description="The vector from which the reporter is derived"
67      column="vector"
68      type="string"
69      length="65535"
70    />
71    <property
72      name="tissue"
73      title="Tissue"
74      description="The tissue from which the reporter is derived"
75      column="tissue"
76      type="string"
77      length="65535"
78    />
79    <property
80      name="library"
81      title="Library"
82      description="The library from which the reporter is derived"
83      column="library"
84      type="string"
85      length="65535"
86    />
87    <property
88      name="accession"
89      title="Accession"
90      description=""
91      column="accession"
92      type="string"
93      length="255"
94    />
95    <property
96      name="nid"
97      title="NID"
98      description=""
99      column="nid"
100      type="string"
101      length="255"
102    />
103    <property
104      name="chromosome"
105      title="Chromosome"
106      description="The chromosome from which the reporter is derived"
107      column="chromosome"
108      type="string"
109      length="255"
110    />
111    <property
112      name="cytoband"
113      title="Cytoband"
114      description="The cytoband from which the reporter is derived"
115      column="cytoband"
116      type="string"
117      length="255"
118    />
119    <property
120      name="markers"
121      title="Markers"
122      description=""
123      column="markers"
124      type="string"
125      length="255"
126    />
127    <property
128      name="antibiotics"
129      title="Antibiotics"
130      description=""
131      column="antibiotics"
132      type="string"
133      length="255"
134    />
135    <property
136      name="locusLink"
137      title="LocusLink"
138      description=""
139      column="locuslink"
140      type="string"
141      length="255"
142      >
143      <link 
144        regexp="\d+" 
145        url="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=Retrieve&amp;dopt=Graphics&amp;list_uids={value}" 
146      />
147    </property>
148    <property
149      name="omim"
150      title="OMIM"
151      description=""
152      column="omim"
153      type="string"
154      length="255"
155      >
156      <link
157        regexp="\d+"
158        url="http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id={value}"
159      />
160    </property>
161  </class>
162   
163  <!-- Extended properties for Users -->
164  <class name="UserData">
165    <property
166      name="mobile"
167      title="Mobile"
168      description="The user's mobile number"
169      column="mobile"
170      type="string"
171      length="255"
172    />
173    <property
174      name="skype"
175      title="Skype"
176      description="The user's skype contact"
177      column="skype"
178      type="string"
179      length="255"
180      >
181      <link
182        regexp=".+"
183        url="callto://{value}"
184      />
185    </property>
186  </class>
187</extended-properties>
188
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