source: trunk/config/dist/migrate.properties @ 4508

Last change on this file since 4508 was 4508, checked in by Jari Häkkinen, 13 years ago

Addresses #1106. Missed to change reference wherefrom retrive GPLv3 license text. And some other changes.

File size: 3.3 KB
Line 
1# $Id: migrate.properties.in 2693 2006-10-03 11:44:54Z nicklas $
2#
3# Copyright (C) 2006 Nicklas Nordborg
4#
5# This file is part of BASE - BioArray Software Environment.
6# Available at http://base.thep.lu.se/
7#
8# BASE is free software; you can redistribute it and/or
9# modify it under the terms of the GNU General Public License
10# as published by the Free Software Foundation; either version 3
11# of the License, or (at your option) any later version.
12#
13# BASE is distributed in the hope that it will be useful,
14# but WITHOUT ANY WARRANTY; without even the implied warranty of
15# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
16# GNU General Public License for more details.
17#
18# You should have received a copy of the GNU General Public License
19# along with BASE. If not, see <http://www.gnu.org/licenses/>.
20
21# BASE 1 database configuration
22# The migration utility needs direct access to BASE 1 database.
23db1.user = 
24db1.password = 
25db1.url = jdbc:mysql://localhost:3306/base?zeroDateTimeBehavior=convertToNull
26db1.driver = com.mysql.jdbc.Driver
27# Number of items to handle in one batch or query
28# A high value increases performance, but uses more memory
29db1.batchsize = 20000
30
31# Currently MySQL is supported
32sql.queries = /mysql-migration-queries.sql
33
34# BASE 2 database configuration
35# This is the password you entered for the root user when running
36# initdb.sh or initdb.bat
37root.password = 
38
39# the location of the BASE 1 data directory
40# The migration utility needs direct access to the BASE 1 files either
41# locally or through nfs
42userfiles = /usr/local/base/data
43
44# The location of the BASE 1 plugins
45# This is needed by the Base1PluginExecuter to find the executable
46# If you plan to move the plugins to another directory you should
47# change this value BEFORE migrating.
48pluginDir = /usr/local/base/plugins
49
50# If set to yes
51#
52#   - Files are never uploaded
53#   - Reporters don't get extended data
54#   - RawBioAssayData don't get extended data
55#   - Plates never get reporters connected to wells
56#
57quickTransfer = no
58
59
60# Use local INSERT INTO base2.Table SELECT FROM base.Table statements for parts of the migration.
61# Make sure that db1.user has write permissions to db2.url configured in base.config.
62# EXPERIMENTAL
63#
64useLocalMySQL = no
65 
66
67# Do not change anything below unless you are sure of what you are doing.
68#
69
70includeQuota          = yes
71includeRole           = yes
72includeReporter       = yes
73includeProtocolType   = yes
74includeNews           = yes
75includeUser           = yes
76includeGroup          = yes
77includeExperiment     = yes
78includeWizzzard       = yes
79includeAnnotationType = yes
80includePlateType      = yes
81includeLabel          = yes
82includeHardware       = yes
83includeSoftware       = yes
84includeUpload         = yes
85includeProtocol       = yes
86includeSampleTissue   = yes
87includeSample         = yes
88includeExtract        = yes
89includeLabeledExtract = yes
90includeAnnotation     = yes
91includePlateEventType = yes
92includeUnmappedPlate  = yes
93includeMappedPlate    = yes
94includeWell           = yes
95includePlateEvent     = yes
96includeArrayDesign    = yes
97includeArrayType      = yes
98includeArrayTypePlate = yes
99includeArrayBlock     = yes
100includeArrayBatch     = yes
101includeArraySlide     = yes
102includeHybridization  = yes
103includeScan           = yes
104includeImage          = yes
105includeRawBioAssay    = yes
106includeRawBioAssayData = yes
107includePlugins        = yes
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