source: trunk/config/dist/web.xml @ 5479

<?xml version="1.0" encoding="UTF-8"?>
<web-app xmlns="http://java.sun.com/xml/ns/javaee"
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation="http://java.sun.com/xml/ns/javaee
  http://java.sun.com/xml/ns/javaee/web-app_2_5.xsd"
   version="2.5">
    
<!--
  $Id: web.xml 5479 2010-11-08 07:33:46Z nicklas $

  Copyright (C) 2006, 2007 Nicklas Nordborg

  This file is part of BASE - BioArray Software Environment.
  Available at http://base.thep.lu.se/

  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
  as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.

  BASE is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with BASE. If not, see <http://www.gnu.org/licenses/>.
-->

  <display-name>BASE</display-name>
  <description>
    The BASE web application.
  </description>
  
  <error-page>
    <exception-type>java.lang.Throwable</exception-type>
    <location>/exception/exception.jsp</location>
  </error-page>
  
  <jsp-config>
    <jsp-property-group>
      <url-pattern>*.jsp</url-pattern>
      <page-encoding>UTF-8</page-encoding>
    </jsp-property-group>
  </jsp-config>
  
  <!-- 
    If BASE Javascript encounters an URL that is longer than
    specified by this setting when assigning it to for example
    location.href = url, BASE will instead try to rewrite the document
    to generate a POST request instead. This is to avoid problem with
    web servers that doesn't accept URL:s longer than a specified size
    For example, Apache has a default max length of 8190. If this setting
    is 0, the rewrite functionality is disabled.
  -->
  <context-param>
    <param-name>max-url-length</param-name>
    <param-value>8000</param-value>
  </context-param>
  
  <!-- 
    BASE startup and shutdown servlet; 
    should be configured to load on startup as the first servlet 
  -->
  <servlet>
    <servlet-name>BASE</servlet-name>
    <servlet-class>net.sf.basedb.clients.web.servlet.StartStopServlet</servlet-class>
    <load-on-startup>1</load-on-startup>
  </servlet>
  
  <!-- The View servlet used to download files in view mode -->
  <servlet>
    <servlet-name>view</servlet-name>
    <servlet-class>
      net.sf.basedb.clients.web.servlet.Download
    </servlet-class>
    <init-param>
      <param-name>default_mime_type</param-name>
      <param-value>text/plain</param-value>
    </init-param>
    <init-param>
      <param-name>use_path_info</param-name>
      <param-value>false</param-value>
    </init-param>
  </servlet>
  <servlet-mapping>
    <servlet-name>view</servlet-name>
    <url-pattern>/filemanager/files/view/*</url-pattern>
  </servlet-mapping>

  <!-- The Download servlet used to download files in download mode -->
  <servlet>
    <servlet-name>download</servlet-name>
    <servlet-class>
      net.sf.basedb.clients.web.servlet.Download
    </servlet-class>
    <init-param>
      <param-name>default_mime_type</param-name>
      <param-value>text/plain</param-value>
    </init-param>
    <init-param>
      <param-name>download</param-name>
      <param-value>true</param-value>
    </init-param>
    <init-param>
      <param-name>use_path_info</param-name>
      <param-value>false</param-value>
    </init-param>
  </servlet>
  <servlet-mapping>
    <servlet-name>download</servlet-name>
    <url-pattern>/filemanager/files/download/*</url-pattern>
  </servlet-mapping>

  <!-- The Upload servlet used to upload files  -->
  <servlet>
    <servlet-name>upload</servlet-name>
    <servlet-class>
      net.sf.basedb.clients.web.servlet.Upload
    </servlet-class>
  </servlet>
  <servlet-mapping>
    <servlet-name>upload</servlet-name>
    <url-pattern>/filemanager/upload/Upload</url-pattern>
  </servlet-mapping>

  <!-- The SpotImage servlet used to view spot images in a raw bioassay -->
  <servlet>
    <servlet-name>spotimage</servlet-name>
    <servlet-class>
      net.sf.basedb.clients.web.servlet.ViewSpotImage
    </servlet-class>
  </servlet>
  <servlet-mapping>
    <servlet-name>spotimage</servlet-name>
    <url-pattern>/views/rawbioassays/rawdata/spotimage/*</url-pattern>
  </servlet-mapping>

  <!-- The Generic PlotServlet for the HTML plot tool -->
  <servlet>
    <servlet-name>plotter</servlet-name>
    <servlet-class>
      net.sf.basedb.clients.web.servlet.PlotServlet
    </servlet-class>
    <init-param>
      <param-name>maxWidth</param-name>
      <param-value>1000</param-value>
    </init-param>
    <init-param>
      <param-name>maxHeight</param-name>
      <param-value>800</param-value>
    </init-param>
    <init-param>
      <param-name>defaultWidth</param-name>
      <param-value>600</param-value>
    </init-param>
    <init-param>
      <param-name>defaultHeight</param-name>
      <param-value>400</param-value>
    </init-param>
    <init-param>
      <param-name>defaultFormat</param-name>
      <param-value>png</param-value>
    </init-param>
  </servlet>
  <servlet-mapping>
    <servlet-name>plotter</servlet-name>
    <url-pattern>/views/experiments/plotter/plot</url-pattern>
  </servlet-mapping>

  <!-- The ExperimentExplorer PlotServlet  -->
  <servlet>
    <servlet-name>eeplotter</servlet-name>
    <servlet-class>
      net.sf.basedb.clients.web.servlet.ExperimentExplorerPlotServlet
    </servlet-class>
  </servlet>
  <servlet-mapping>
    <servlet-name>eeplotter</servlet-name>
    <url-pattern>/views/experiments/explorer/plot</url-pattern>
  </servlet-mapping>

  <!-- The News feed servlet  -->
  <!-- Comment out this servlet to disable the RSS feed -->
  <servlet>
    <servlet-name>news-feed</servlet-name>
    <servlet-class>
      net.sf.basedb.clients.web.servlet.RssNewsFeed
    </servlet-class>
    <load-on-startup>1</load-on-startup>
  </servlet>
  <servlet-mapping>
    <servlet-name>news-feed</servlet-name>
    <url-pattern>/info/news.rss</url-pattern>
  </servlet-mapping>

  <!-- Axis2 servlets for web services -->
  <servlet>
    <servlet-name>AxisServlet</servlet-name>
    <display-name>Apache-Axis Servlet</display-name>
    <servlet-class>org.apache.axis2.transport.http.AxisServlet</servlet-class>
    <load-on-startup>3</load-on-startup>
  </servlet>
  <servlet>
    <servlet-name>AxisRESTServlet</servlet-name>
    <display-name>Apache-Axis Servlet (REST)</display-name>
    <servlet-class>org.apache.axis2.transport.http.AxisRESTServlet</servlet-class>
  </servlet>
  <servlet-mapping>
    <servlet-name>AxisRESTServlet</servlet-name>
    <url-pattern>/rest/*</url-pattern>
  </servlet-mapping>
  <servlet-mapping>
    <servlet-name>AxisServlet</servlet-name>
    <url-pattern>/services/*</url-pattern>
  </servlet-mapping>
  
  <!-- Extensions servlet for managing extensions to the web client -->
  <servlet>
    <servlet-name>ExtensionsServlet</servlet-name>
    <display-name>Web client extensions manager</display-name>
    <servlet-class>net.sf.basedb.clients.web.servlet.ExtensionsServlet</servlet-class>
    <load-on-startup>2</load-on-startup>
  </servlet>
  <servlet-mapping>
    <servlet-name>ExtensionsServlet</servlet-name>
    <url-pattern>*.servlet</url-pattern>
  </servlet-mapping>
  <servlet-mapping>
    <servlet-name>ExtensionsServlet</servlet-name>
    <url-pattern>/extensions/servlet/*</url-pattern>
  </servlet-mapping>
  
  <!-- Mapping *.xjsp files to a custom JSP compiler that adds extension JAR file to classpath -->
  <!-- EXPERIMENTAL!! -->
    <servlet>
        <servlet-name>xjsp</servlet-name>
        <servlet-class>org.apache.jasper.servlet.JspServlet</servlet-class>
        <init-param>
            <param-name>fork</param-name>
            <param-value>false</param-value>
        </init-param>
        <init-param>
          <param-name>compilerClassName</param-name>
          <param-value>net.sf.basedb.clients.web.extensions.XJspCompiler</param-value>
        </init-param>
    </servlet>
    <servlet-mapping>
        <servlet-name>xjsp</servlet-name>
        <url-pattern>*.xjsp</url-pattern>
    </servlet-mapping>

  
  <!-- The CompileAll servlet used to compile all JSP pages -->
  <!-- EXPERIMENTAL!! -->
  <!--
  <servlet>
    <servlet-name>compile</servlet-name>
    <servlet-class>
      net.sf.basedb.clients.web.servlet.CompileAll
    </servlet-class>
  </servlet>
  <servlet-mapping>
    <servlet-name>compile</servlet-name>
    <url-pattern>/compile</url-pattern>
  </servlet-mapping>
  -->

  <!-- A filter that sets the character encoding on all *.jsp and *.xjsp files -->
  <filter>
    <filter-name>characterEncoding</filter-name>
    <filter-class>net.sf.basedb.clients.web.servlet.CharacterEncodingFilter</filter-class>
    <init-param>
      <param-name>characterEncoding</param-name>
      <param-value>UTF-8</param-value>
    </init-param>
  </filter>
  <filter-mapping>
    <filter-name>characterEncoding</filter-name>
    <url-pattern>*.jsp</url-pattern>
  </filter-mapping>
  <filter-mapping>
    <filter-name>characterEncoding</filter-name>
    <url-pattern>*.xjsp</url-pattern>
  </filter-mapping>

</web-app>