source: trunk/doc/admin/plugin_configuration/import/reporter_importer_96wells.xml @ 3066

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE configfile SYSTEM "plugin-configuration-file.dtd">
<!--
  $Id: reporter_importer_96wells.xml 3066 2007-01-18 10:25:24Z jari $

  Copyright (C) Authors contributing to this file.

  This file is part of BASE - BioArray Software Environment.
  Available at http://base.thep.lu.se/

  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
  as published by the Free Software Foundation; either version 2
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  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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  You should have received a copy of the GNU General Public License
  along with this program; if not, write to the Free Software
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-->
<configfile>
  <configuration pluginClassName="net.sf.basedb.plugins.ReporterFlatFileImporter">
    <configname>Reporters from 96well plates file</configname>
    <description>This configuration is for importing reporters from the same text file as 96well plates are imported from.</description>
    <parameter>
      <name>nameColumnMapping</name>
      <label>Name</label>
      <description />
      <class>java.lang.String</class>
      <value>\oligo_id\</value>
    </parameter>
    <parameter>
      <name>dataHeaderRegexp</name>
      <label>Data header</label>
      <description />
      <class>java.lang.String</class>
      <value>96_number\t96_column\t96_row\t96_position\toligo_id.*</value>
    </parameter>
    <parameter>
      <name>trimQuotes</name>
      <label>Remove quotes</label>
      <description />
      <class>java.lang.Boolean</class>
      <value>true</value>
    </parameter>
    <parameter>
      <name>dataSplitterRegexp</name>
      <label>Data splitter</label>
      <description />
      <class>java.lang.String</class>
      <value>\t</value>
    </parameter>
    <parameter>
      <name>descriptionColumnMapping</name>
      <label>Description</label>
      <description />
      <class>java.lang.String</class>
      <value>\description_Ensembl*\</value>
    </parameter>
    <parameter>
      <name>symbolColumnMapping</name>
      <label>Gene symbol</label>
      <description />
      <class>java.lang.String</class>
      <value>\gene_symbol_Ensembl*\</value>
    </parameter>
    <parameter>
      <name>reporterIdColumnMapping</name>
      <label>Reporter ID</label>
      <description />
      <class>java.lang.String</class>
      <value>\oligo_id\</value>
    </parameter>
    <parameter>
      <name>extendedColumnMapping.sequence</name>
      <label>Sequence</label>
      <description />
      <class>java.lang.String</class>
      <value>\oligo_sequence\</value>
    </parameter>
  </configuration>
</configfile>