| 1 | <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> |
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| 2 | <!-- |
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| 3 | $Id: coreplugins.html 4889 2009-04-06 12:52:39Z nicklas $ |
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| 4 | |
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| 5 | Copyright (C) 2007 Jari Häkkinen, Peter Johansson, Martin Svensson |
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| 6 | |
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| 7 | This file is part of BASE - BioArray Software Environment. |
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| 8 | Available at http://base.thep.lu.se/ |
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| 9 | |
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| 10 | BASE is free software; you can redistribute it and/or |
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| 11 | modify it under the terms of the GNU General Public License |
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| 12 | as published by the Free Software Foundation; either version 3 |
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| 13 | of the License, or (at your option) any later version. |
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| 14 | |
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| 15 | BASE is distributed in the hope that it will be useful, |
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| 16 | but WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 17 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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| 18 | GNU General Public License for more details. |
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| 19 | |
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| 20 | You should have received a copy of the GNU General Public License |
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| 21 | along with BASE. If not, see <http://www.gnu.org/licenses/>. |
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| 22 | --> |
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| 23 | <html> |
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| 24 | <a name="top"></a> |
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| 25 | <head> |
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| 26 | <title>BASE 2 - Core plugins and tools</title> |
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| 27 | <link rel=stylesheet type="text/css" href="../../styles.css"> |
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| 28 | </head> |
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| 29 | <body style="width:880px"> |
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| 30 | <div class="navigation"> |
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| 31 | <a href="../../index.html">BASE</a> |
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| 32 | <img src="../../next.gif"> |
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| 33 | <a href="../index.html">Administrator documentation</a> |
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| 34 | <img src="../../next.gif">Core plugins |
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| 35 | </div> |
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| 36 | |
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| 37 | <h1>BASE 2 - Core plugins</h1> |
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| 38 | <div class="abstract"> |
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| 39 | <p> |
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| 40 | This document is mostly superseeded by the <a |
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| 41 | href="http://base.thep.lu.se/chrome/site/latest/html/appendix/appendix.coreplugins.html">core |
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| 42 | plugins list in the BASE 2 documentation</a>. Some tools are |
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| 43 | still listed here. |
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| 44 | </p> |
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| 45 | |
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| 46 | <b>Contents</b> |
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| 47 | <ol> |
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| 48 | <li><a href="#tools">Tools</a></li> |
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| 49 | </ol> |
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| 50 | |
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| 51 | <p class="authors"> |
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| 52 | <b>Last updated:</b> $Date: 2007-01-09$ <br> |
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| 53 | <b>Copyright ©</b> 2007 The respective authors. All rights reserved. |
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| 54 | </p> |
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| 55 | </div> |
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| 56 | <ol> |
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| 57 | <li> |
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| 58 | <a name="tools"></a> |
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| 59 | <h2>Tools</h2> |
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| 60 | <table class="listing"> |
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| 61 | <tr> |
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| 62 | <th>Name</th> |
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| 63 | <th>Note</th> |
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| 64 | </tr> |
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| 65 | <tr> |
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| 66 | <td>MultiExperiment Viewer, MeV</td> |
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| 67 | <td>MeV is a versatile microarray data analysis tool, |
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| 68 | incorporating sophisticated algorithms for clustering, |
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| 69 | visualization, classification, statistical analysis and |
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| 70 | biological theme discovery, http://www.tm4.org. We use a |
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| 71 | modified version of MeV and provide information about |
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| 72 | the changes at |
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| 73 | <a |
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| 74 | href=http://dev.thep.lu.se/basehacks>http://dev.thep.lu.se/basehacks</a>.</td> |
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| 75 | </tr> |
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| 76 | </table> |
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| 77 | <div align="right"><a href="#top">top of this document</a></div> |
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| 78 | </li> |
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| 79 | </ol> |
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| 80 | </body> |
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| 81 | </html> |
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