| 1 | <?xml version="1.0" encoding="UTF-8"?> |
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| 2 | <!DOCTYPE appendix PUBLIC |
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| 3 | "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN" |
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| 4 | "../../../../lib/docbook/preprocess/dweiss-docbook-extensions.dtd"> |
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| 5 | <!-- |
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| 6 | $Id$ |
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| 7 | |
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| 8 | Copyright (C) Authors contributing to this file. |
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| 9 | |
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| 10 | This file is part of BASE - BioArray Software Environment. |
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| 11 | Available at http://base.thep.lu.se/ |
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| 12 | |
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| 13 | BASE is free software; you can redistribute it and/or |
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| 14 | modify it under the terms of the GNU General Public License |
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| 15 | as published by the Free Software Foundation; either version 2 |
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| 16 | of the License, or (at your option) any later version. |
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| 17 | |
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| 18 | BASE is distributed in the hope that it will be useful, |
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| 19 | but WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 20 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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| 21 | GNU General Public License for more details. |
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| 22 | |
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| 23 | You should have received a copy of the GNU General Public License |
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| 24 | along with this program; if not, write to the Free Software |
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| 25 | Foundation, Inc., 59 Temple Place - Suite 330, |
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| 26 | Boston, MA 02111-1307, USA. |
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| 27 | --> |
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| 28 | |
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| 29 | <appendix id="appendix.menuguide"> |
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| 30 | <?dbhtml dir="appendix/menuguide"?> |
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| 31 | <title>Menu guide</title> |
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| 32 | <para> |
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| 33 | This appendix covers all menu items in BASE, including submenus. You should use it as a map |
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| 34 | to easily find your way through the menus. Some menu items are refering to other section of |
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| 35 | the documentation, that holds more information. The list of menu items is organized after |
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| 36 | three different types, |
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| 37 | <itemizedlist> |
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| 38 | <listitem> |
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| 39 | <simpara> |
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| 40 | <link linkend="menuguide.tables.config">Config</link> |
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| 41 | </simpara> |
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| 42 | </listitem> |
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| 43 | <listitem> |
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| 44 | <simpara> |
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| 45 | <link linkend="menuguide.tables.items">Items</link> |
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| 46 | </simpara> |
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| 47 | </listitem> |
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| 48 | <listitem> |
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| 49 | <simpara> |
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| 50 | <link linkend="menuguide.tables.miscellaneous">Miscellaneous</link> |
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| 51 | </simpara> |
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| 52 | </listitem> |
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| 53 | </itemizedlist> |
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| 54 | </para> |
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| 55 | |
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| 56 | <simplesect id="menuguide.tables.config"> |
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| 57 | <title>Configurations</title> |
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| 58 | <informaltable frame="all"> |
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| 59 | <tgroup cols="3" align='left'> |
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| 60 | <colspec colname='config' align='left' /> |
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| 61 | <colspec colname='menupath' /> |
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| 62 | <colspec colname='comments' /> |
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| 63 | <thead> |
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| 64 | <row> |
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| 65 | <entry namest="config" nameend="comments" align='center'>Settings</entry> |
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| 66 | </row> |
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| 67 | <row> |
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| 68 | <entry>Configure</entry> |
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| 69 | <entry>Menu choice</entry> |
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| 70 | <entry>Comment</entry> |
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| 71 | </row> |
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| 72 | </thead> |
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| 73 | <tbody> |
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| 74 | <row> |
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| 75 | <entry>Appearance of webclient</entry> |
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| 76 | <entry> |
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| 77 | <menuchoice> |
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| 78 | <guimenu>File</guimenu> |
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| 79 | <guimenuitem>Preferences…</guimenuitem> |
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| 80 | </menuchoice> |
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| 81 | </entry> |
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| 82 | <entry> |
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| 83 | <xref linkend="webclient.configuration.preferences" /> |
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| 84 | </entry> |
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| 85 | </row> |
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| 86 | <row> |
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| 87 | <entry>Contact information (your own)</entry> |
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| 88 | <entry> |
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| 89 | <menuchoice> |
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| 90 | <guimenu>File</guimenu> |
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| 91 | <guimenuitem>Contact information…</guimenuitem> |
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| 92 | </menuchoice> |
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| 93 | </entry> |
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| 94 | <entry> |
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| 95 | <xref linkend="webclient.configuration.contact" /> |
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| 96 | </entry> |
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| 97 | </row> |
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| 98 | <row> |
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| 99 | <entry>Most recently used items</entry> |
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| 100 | <entry> |
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| 101 | The tab |
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| 102 | <guilabel>Most recent</guilabel> |
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| 103 | under |
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| 104 | <menuchoice> |
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| 105 | <guimenu>File</guimenu> |
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| 106 | <guimenuitem>Preferences…</guimenuitem> |
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| 107 | </menuchoice> |
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| 108 | </entry> |
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| 109 | <entry> |
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| 110 | <xref linkend="webclient.configuration.preferences.mostrecent" /> |
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| 111 | </entry> |
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| 112 | </row> |
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| 113 | <row> |
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| 114 | <entry>Other information (your own)</entry> |
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| 115 | <entry> |
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| 116 | <menuchoice> |
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| 117 | <guimenu>File</guimenu> |
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| 118 | <guimenuitem>Other information…</guimenuitem> |
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| 119 | </menuchoice> |
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| 120 | </entry> |
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| 121 | <entry>Useful information about yourself.</entry> |
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| 122 | </row> |
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| 123 | <row> |
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| 124 | <entry>Password (your own)</entry> |
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| 125 | <entry> |
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| 126 | <menuchoice> |
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| 127 | <guimenu>File</guimenu> |
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| 128 | <guimenuitem>Change password…</guimenuitem> |
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| 129 | </menuchoice> |
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| 130 | </entry> |
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| 131 | <entry> |
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| 132 | <xref linkend="webclient.configuration.password" /> |
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| 133 | </entry> |
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| 134 | </row> |
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| 135 | <row> |
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| 136 | <entry>Plugin messages</entry> |
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| 137 | <entry> |
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| 138 | The tab |
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| 139 | <guilabel>Plugins</guilabel> |
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| 140 | under |
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| 141 | <menuchoice> |
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| 142 | <guimenu>File</guimenu> |
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| 143 | <guimenuitem>Preferences…</guimenuitem> |
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| 144 | </menuchoice> |
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| 145 | </entry> |
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| 146 | <entry> |
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| 147 | <xref linkend="webclient.configuration.preferences.plugins" /> |
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| 148 | </entry> |
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| 149 | </row> |
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| 150 | <row> |
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| 151 | <entry>Server settings</entry> |
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| 152 | <entry> |
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| 153 | <menuchoice> |
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| 154 | <guimenu>Administrate</guimenu> |
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| 155 | <guimenuitem>Server settings…</guimenuitem> |
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| 156 | </menuchoice> |
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| 157 | </entry> |
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| 158 | <entry>Currently no documentation.</entry> |
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| 159 | </row> |
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| 160 | </tbody> |
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| 161 | </tgroup> |
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| 162 | </informaltable> |
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| 163 | </simplesect> |
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| 164 | <simplesect id="menuguide.tables.miscellaneous"> |
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| 165 | <title>Miscellaneous</title> |
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| 166 | <informaltable frame="all"> |
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| 167 | <tgroup cols="3"> |
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| 168 | <colspec colname="action" /> |
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| 169 | <colspec colname="menupath" /> |
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| 170 | <colspec colname="comments" /> |
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| 171 | <thead> |
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| 172 | <row> |
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| 173 | <entry namest="action" nameend="comments" align='center'> |
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| 174 | Miscellaneous |
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| 175 | </entry> |
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| 176 | </row> |
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| 177 | <row> |
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| 178 | <entry>Action</entry> |
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| 179 | <entry>Menu choice</entry> |
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| 180 | <entry>Comment</entry> |
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| 181 | </row> |
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| 182 | </thead> |
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| 183 | <tbody> |
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| 184 | <row> |
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| 185 | <entry>About the program</entry> |
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| 186 | <entry> |
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| 187 | <menuchoice> |
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| 188 | <guimenu>Help</guimenu> |
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| 189 | <guimenuitem>About…</guimenuitem> |
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| 190 | </menuchoice> |
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| 191 | </entry> |
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| 192 | <entry>Useful information about the program.</entry> |
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| 193 | </row> |
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| 194 | <row> |
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| 195 | <entry>BASE project information</entry> |
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| 196 | <entry> |
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| 197 | <menuchoice> |
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| 198 | <guimenu>Help</guimenu> |
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| 199 | <guimenuitem>BASE project site…</guimenuitem> |
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| 200 | </menuchoice> |
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| 201 | </entry> |
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| 202 | <entry>The home page of the BASE2 project</entry> |
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| 203 | </row> |
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| 204 | <row> |
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| 205 | <entry>Disk usage overview</entry> |
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| 206 | <entry> |
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| 207 | <menuchoice> |
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| 208 | <guimenu>Administrate</guimenu> |
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| 209 | <guimenuitem>Disk usage</guimenuitem> |
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| 210 | </menuchoice> |
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| 211 | </entry> |
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| 212 | <entry> |
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| 213 | Disk usage of users, groups etc. Currently no other documentation. |
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| 214 | </entry> |
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| 215 | </row> |
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| 216 | <row> |
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| 217 | <entry>Exit from the program</entry> |
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| 218 | <entry> |
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| 219 | <menuchoice> |
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| 220 | <guimenu>File</guimenu> |
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| 221 | <guimenuitem>Logout…</guimenuitem> |
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| 222 | </menuchoice> |
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| 223 | </entry> |
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| 224 | <entry>You are loged out and redirected to the login page.</entry> |
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| 225 | </row> |
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| 226 | <row> |
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| 227 | <entry>License information</entry> |
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| 228 | <entry> |
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| 229 | <menuchoice> |
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| 230 | <guimenu>Help</guimenu> |
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| 231 | <guimenuitem>License…</guimenuitem> |
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| 232 | </menuchoice> |
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| 233 | </entry> |
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| 234 | <entry>The GNU GPL (General Public License)</entry> |
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| 235 | </row> |
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| 236 | <row> |
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| 237 | <entry>Load your current permissions</entry> |
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| 238 | <entry> |
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| 239 | <menuchoice> |
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| 240 | <guimenu>File</guimenu> |
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| 241 | <guimenuitem>Reload permissions</guimenuitem> |
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| 242 | </menuchoice> |
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| 243 | </entry> |
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| 244 | <entry> |
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| 245 | This updates the loged in user's permissions. See |
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| 246 | <xref linkend="project_permission.permissions" /> |
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| 247 | </entry> |
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| 248 | </row> |
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| 249 | <row> |
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| 250 | <entry>Report program defects</entry> |
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| 251 | <entry> |
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| 252 | <menuchoice> |
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| 253 | <guimenu>Help</guimenu> |
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| 254 | <guimenuitem>Report a bug…</guimenuitem> |
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| 255 | </menuchoice> |
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| 256 | </entry> |
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| 257 | <entry> |
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| 258 | This is where you should turn if there are any defects in the program |
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| 259 | </entry> |
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| 260 | </row> |
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| 261 | <row> |
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| 262 | <entry>Restart server/program</entry> |
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| 263 | <entry> |
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| 264 | <menuchoice> |
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| 265 | <guimenu>Administrate</guimenu> |
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| 266 | <guimenuitem>Restart BASE…</guimenuitem> |
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| 267 | </menuchoice> |
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| 268 | </entry> |
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| 269 | <entry> |
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| 270 | Restarts the program. Requires everyone, that were loged in, to identify |
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| 271 | themself again with username and password. |
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| 272 | </entry> |
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| 273 | </row> |
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| 274 | </tbody> |
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| 275 | </tgroup> |
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| 276 | </informaltable> |
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| 277 | </simplesect> |
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| 278 | <simplesect id="menuguide.tables.items"> |
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| 279 | <title>Items</title> |
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| 280 | <informaltable rowsep="0" frame="all"> |
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| 281 | <tgroup cols='4'> |
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| 282 | <colspec colname='range' colwidth="10*" /> |
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| 283 | <colspec colname='item' colwidth="20*" /> |
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| 284 | <colspec colname='menupath' colwidth="35*" /> |
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| 285 | <colspec colname='comment' colwidth="35*" /> |
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| 286 | <thead> |
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| 287 | <row rowsep="1"> |
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| 288 | <entry namest="range" nameend="comment" align='center'> |
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| 289 | Items (<link linkend="a-h">A-H</link>, |
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| 290 | <link linkend="i-p">I-P</link>, |
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| 291 | <link linkend="q-z">Q-Z</link>) |
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| 292 | </entry> |
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| 293 | </row> |
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| 294 | <row rowsep="1"> |
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| 295 | <entry namest="range" nameend="item">Want to view…</entry> |
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| 296 | <entry>Menu path</entry> |
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| 297 | <entry>Comment</entry> |
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| 298 | </row> |
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| 299 | </thead> |
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| 300 | <tbody> |
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| 301 | <!-- ################ A - H ################ --> |
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| 302 | <row> |
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| 303 | <entry align="center" valign="middle" morerows="18"> |
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| 304 | <keycap>A-H</keycap> |
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| 305 | </entry> |
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| 306 | <entry id="a-h" rowsep="1">All items own by yourself</entry> |
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| 307 | <entry rowsep="1"> |
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| 308 | <menuchoice> |
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| 309 | <guimenu>View</guimenu> |
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| 310 | <guimenuitem>All items</guimenuitem> |
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| 311 | </menuchoice> |
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| 312 | </entry> |
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| 313 | <entry rowsep="1">Gives a complete overview of all your items.</entry> |
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| 314 | </row> |
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| 315 | <row rowsep="1"> |
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| 316 | <entry>Annotation types</entry> |
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| 317 | <entry> |
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| 318 | <menuchoice> |
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| 319 | <guimenu>Administrate</guimenu> |
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| 320 | <guimenuitem>Types</guimenuitem> |
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| 321 | <guisubmenu>Annotation types</guisubmenu> |
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| 322 | </menuchoice> |
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| 323 | </entry> |
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| 324 | <entry> |
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| 325 | <xref linkend="annotations" /> |
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| 326 | </entry> |
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| 327 | </row> |
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| 328 | <row rowsep="1"> |
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| 329 | <entry>Array batches</entry> |
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| 330 | <entry> |
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| 331 | <menuchoice> |
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| 332 | <guimenu>Array LIMS</guimenu> |
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| 333 | <guimenuitem>Array batches</guimenuitem> |
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| 334 | </menuchoice> |
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| 335 | </entry> |
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| 336 | <entry> |
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| 337 | <xref linkend="array_lims" /> |
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| 338 | </entry> |
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| 339 | </row> |
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| 340 | <row rowsep="1"> |
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| 341 | <entry>Array designs</entry> |
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| 342 | <entry> |
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| 343 | <menuchoice> |
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| 344 | <guimenu>Array LIMS</guimenu> |
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| 345 | <guimenuitem>Array designs</guimenuitem> |
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| 346 | </menuchoice> |
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| 347 | </entry> |
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| 348 | <entry> |
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| 349 | <xref linkend="array_lims" /> |
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| 350 | </entry> |
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| 351 | </row> |
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| 352 | <row rowsep="1"> |
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| 353 | <entry>Array slides</entry> |
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| 354 | <entry> |
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| 355 | <menuchoice> |
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| 356 | <guimenu>Array LIMS</guimenu> |
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| 357 | <guimenuitem>Array slides</guimenuitem> |
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| 358 | </menuchoice> |
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| 359 | </entry> |
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| 360 | <entry> |
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| 361 | <xref linkend="array_lims" /> |
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| 362 | </entry> |
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| 363 | </row> |
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| 364 | <row rowsep="1"> |
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| 365 | <entry>Biosources</entry> |
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| 366 | <entry> |
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| 367 | <menuchoice> |
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| 368 | <guimenu>View</guimenu> |
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| 369 | <guimenuitem>Biosources</guimenuitem> |
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| 370 | </menuchoice> |
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| 371 | </entry> |
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| 372 | <entry> |
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| 373 | <xref linkend="biomaterials" /> |
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| 374 | </entry> |
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| 375 | </row> |
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| 376 | <row rowsep="1"> |
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| 377 | <entry>Categories of annotation types</entry> |
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| 378 | <entry> |
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| 379 | <menuchoice> |
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| 380 | <guimenu>Administrate</guimenu> |
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| 381 | <guimenuitem>Types</guimenuitem> |
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| 382 | <guisubmenu>Annotation type categories</guisubmenu> |
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| 383 | </menuchoice> |
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| 384 | </entry> |
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| 385 | <entry> |
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| 386 | <xref linkend="annotations" /> |
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| 387 | </entry> |
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| 388 | </row> |
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| 389 | <row rowsep="1"> |
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| 390 | <entry>Clients</entry> |
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| 391 | <entry> |
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| 392 | <menuchoice> |
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| 393 | <guimenu>Administrate</guimenu> |
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| 394 | <guimenuitem>Clients</guimenuitem> |
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| 395 | </menuchoice> |
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| 396 | </entry> |
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| 397 | <entry></entry> |
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| 398 | </row> |
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| 399 | <row rowsep="1"> |
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| 400 | <entry>Experiments</entry> |
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| 401 | <entry> |
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| 402 | <menuchoice> |
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| 403 | <guimenu>View</guimenu> |
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| 404 | <guimenuitem>Experiments</guimenuitem> |
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| 405 | </menuchoice> |
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| 406 | </entry> |
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| 407 | <entry> |
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| 408 | <xref linkend="experiments_analysis.experiments" /> |
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| 409 | </entry> |
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| 410 | </row> |
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| 411 | <row rowsep="1"> |
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| 412 | <entry>Extra value types</entry> |
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| 413 | <entry> |
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| 414 | <menuchoice> |
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| 415 | <guimenu>Administrate</guimenu> |
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| 416 | <guimenuitem>Types</guimenuitem> |
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| 417 | <guisubmenu>Extra value types</guisubmenu> |
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| 418 | </menuchoice> |
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| 419 | </entry> |
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| 420 | <entry></entry> |
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| 421 | </row> |
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| 422 | <row rowsep="1"> |
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| 423 | <entry>Extracts</entry> |
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| 424 | <entry> |
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| 425 | <menuchoice> |
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| 426 | <guimenu>View</guimenu> |
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| 427 | <guimenuitem>Extracts</guimenuitem> |
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| 428 | </menuchoice> |
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| 429 | </entry> |
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| 430 | <entry> |
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| 431 | <xref linkend="biomaterials" /> |
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| 432 | </entry> |
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| 433 | </row> |
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| 434 | <row rowsep="1"> |
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| 435 | <entry>Files and directories</entry> |
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| 436 | <entry> |
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| 437 | <menuchoice> |
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| 438 | <guimenu>View</guimenu> |
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| 439 | <guimenuitem>Files</guimenuitem> |
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| 440 | </menuchoice> |
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| 441 | </entry> |
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| 442 | <entry> |
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| 443 | <xref linkend="file_system" /> |
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| 444 | </entry> |
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| 445 | </row> |
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| 446 | <row rowsep="1"> |
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| 447 | <entry>File types</entry> |
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| 448 | <entry> |
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| 449 | <menuchoice> |
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| 450 | <guimenu>Administrate</guimenu> |
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| 451 | <guimenuitem>Types</guimenuitem> |
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| 452 | <guisubmenu>File types</guisubmenu> |
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| 453 | </menuchoice> |
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| 454 | </entry> |
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| 455 | <entry> |
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| 456 | <xref linkend="file_system.filetypes" /> |
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| 457 | </entry> |
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| 458 | </row> |
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| 459 | <row rowsep="1"> |
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| 460 | <entry>Formulas</entry> |
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| 461 | <entry> |
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| 462 | <menuchoice> |
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| 463 | <guimenu>View</guimenu> |
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| 464 | <guimenuitem>Formulas</guimenuitem> |
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| 465 | </menuchoice> |
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| 466 | </entry> |
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| 467 | <entry></entry> |
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| 468 | </row> |
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| 469 | <row rowsep="1"> |
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| 470 | <entry>Groups</entry> |
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| 471 | <entry> |
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| 472 | <menuchoice> |
|---|
| 473 | <guimenu>Administrate</guimenu> |
|---|
| 474 | <guimenuitem>Groups</guimenuitem> |
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| 475 | </menuchoice> |
|---|
| 476 | </entry> |
|---|
| 477 | <entry> |
|---|
| 478 | <xref linkend="user_administration.groups" /> |
|---|
| 479 | </entry> |
|---|
| 480 | </row> |
|---|
| 481 | <row rowsep="1"> |
|---|
| 482 | <entry>Hardware</entry> |
|---|
| 483 | <entry> |
|---|
| 484 | <menuchoice> |
|---|
| 485 | <guimenu>Administrate</guimenu> |
|---|
| 486 | <guimenuitem>Hardware</guimenuitem> |
|---|
| 487 | </menuchoice> |
|---|
| 488 | </entry> |
|---|
| 489 | <entry> |
|---|
| 490 | <xref linkend="hardware" /> |
|---|
| 491 | </entry> |
|---|
| 492 | </row> |
|---|
| 493 | <row rowsep="1"> |
|---|
| 494 | <entry>Hardware types</entry> |
|---|
| 495 | <entry> |
|---|
| 496 | <menuchoice> |
|---|
| 497 | <guimenu>Administrate</guimenu> |
|---|
| 498 | <guimenuitem>Types</guimenuitem> |
|---|
| 499 | <guisubmenu>Hardware types</guisubmenu> |
|---|
| 500 | </menuchoice> |
|---|
| 501 | </entry> |
|---|
| 502 | <entry></entry> |
|---|
| 503 | </row> |
|---|
| 504 | <row rowsep="1"> |
|---|
| 505 | <entry>Helptexts</entry> |
|---|
| 506 | <entry> |
|---|
| 507 | <menuchoice> |
|---|
| 508 | <guimenu>Administrate</guimenu> |
|---|
| 509 | <guimenuitem>Clients</guimenuitem> |
|---|
| 510 | </menuchoice>, |
|---|
| 511 | use the |
|---|
| 512 | <guilabel>Helptext</guilabel> |
|---|
| 513 | tab when viewing a client. |
|---|
| 514 | </entry> |
|---|
| 515 | <entry></entry> |
|---|
| 516 | </row> |
|---|
| 517 | <row rowsep="1"> |
|---|
| 518 | <entry>Hybridizations</entry> |
|---|
| 519 | <entry> |
|---|
| 520 | <menuchoice> |
|---|
| 521 | <guimenu>View</guimenu> |
|---|
| 522 | <guimenuitem>Hybridizations</guimenuitem> |
|---|
| 523 | </menuchoice> |
|---|
| 524 | </entry> |
|---|
| 525 | <entry> |
|---|
| 526 | <xref linkend="biomaterials" /> |
|---|
| 527 | </entry> |
|---|
| 528 | </row> |
|---|
| 529 | <!-- ################ I - P ################ --> |
|---|
| 530 | <row> |
|---|
| 531 | <entry align="center" valign="middle" morerows="15"> |
|---|
| 532 | <keycap>I-P</keycap> |
|---|
| 533 | </entry> |
|---|
| 534 | <entry id="i-p" rowsep="1" >Jobs</entry> |
|---|
| 535 | <entry rowsep="1"> |
|---|
| 536 | <menuchoice> |
|---|
| 537 | <guimenu>View</guimenu> |
|---|
| 538 | <guimenuitem>Jobs</guimenuitem> |
|---|
| 539 | </menuchoice> |
|---|
| 540 | </entry> |
|---|
| 541 | <entry rowsep="1"></entry> |
|---|
| 542 | </row> |
|---|
| 543 | <row rowsep="1"> |
|---|
| 544 | <entry>Labeled extracts</entry> |
|---|
| 545 | <entry> |
|---|
| 546 | <menuchoice> |
|---|
| 547 | <guimenu>View</guimenu> |
|---|
| 548 | <guimenuitem>Labeled extracts</guimenuitem> |
|---|
| 549 | </menuchoice> |
|---|
| 550 | </entry> |
|---|
| 551 | <entry> |
|---|
| 552 | <xref linkend="biomaterials" /> |
|---|
| 553 | </entry> |
|---|
| 554 | </row> |
|---|
| 555 | <row rowsep="1"> |
|---|
| 556 | <entry>Labels</entry> |
|---|
| 557 | <entry> |
|---|
| 558 | <menuchoice> |
|---|
| 559 | <guimenu>View</guimenu> |
|---|
| 560 | <guimenuitem>Labels</guimenuitem> |
|---|
| 561 | </menuchoice> |
|---|
| 562 | </entry> |
|---|
| 563 | <entry></entry> |
|---|
| 564 | </row> |
|---|
| 565 | <row rowsep="1"> |
|---|
| 566 | <entry>MIME types</entry> |
|---|
| 567 | <entry> |
|---|
| 568 | <menuchoice> |
|---|
| 569 | <guimenu>Administrate</guimenu> |
|---|
| 570 | <guimenuitem>Types</guimenuitem> |
|---|
| 571 | <guisubmenu>MIME types</guisubmenu> |
|---|
| 572 | </menuchoice> |
|---|
| 573 | </entry> |
|---|
| 574 | <entry></entry> |
|---|
| 575 | </row> |
|---|
| 576 | <row rowsep="1"> |
|---|
| 577 | <entry>Messages</entry> |
|---|
| 578 | <entry> |
|---|
| 579 | <menuchoice> |
|---|
| 580 | <guimenu>View</guimenu> |
|---|
| 581 | <guimenuitem>Messages</guimenuitem> |
|---|
| 582 | </menuchoice> |
|---|
| 583 | </entry> |
|---|
| 584 | <entry></entry> |
|---|
| 585 | </row> |
|---|
| 586 | <row rowsep="1"> |
|---|
| 587 | <entry>News</entry> |
|---|
| 588 | <entry> |
|---|
| 589 | <menuchoice> |
|---|
| 590 | <guimenu>Administrate</guimenu> |
|---|
| 591 | <guimenuitem>News</guimenuitem> |
|---|
| 592 | </menuchoice> |
|---|
| 593 | </entry> |
|---|
| 594 | <entry></entry> |
|---|
| 595 | </row> |
|---|
| 596 | <row rowsep="1"> |
|---|
| 597 | <entry>Plates</entry> |
|---|
| 598 | <entry> |
|---|
| 599 | <menuchoice> |
|---|
| 600 | <guimenu>Array LIMS</guimenu> |
|---|
| 601 | <guimenuitem>Plates</guimenuitem> |
|---|
| 602 | </menuchoice> |
|---|
| 603 | </entry> |
|---|
| 604 | <entry> |
|---|
| 605 | <xref linkend="array_lims" /> |
|---|
| 606 | </entry> |
|---|
| 607 | </row> |
|---|
| 608 | <row rowsep="1"> |
|---|
| 609 | <entry>Plate geometries</entry> |
|---|
| 610 | <entry> |
|---|
| 611 | <menuchoice> |
|---|
| 612 | <guimenu>Array LIMS</guimenu> |
|---|
| 613 | <guimenuitem>Plate geometries</guimenuitem> |
|---|
| 614 | </menuchoice> |
|---|
| 615 | </entry> |
|---|
| 616 | <entry> |
|---|
| 617 | <xref linkend="array_lims" /> |
|---|
| 618 | </entry> |
|---|
| 619 | </row> |
|---|
| 620 | <row rowsep="1"> |
|---|
| 621 | <entry>Plate mappings</entry> |
|---|
| 622 | <entry> |
|---|
| 623 | <menuchoice> |
|---|
| 624 | <guimenu>Array LIMS</guimenu> |
|---|
| 625 | <guimenuitem>Plate mappings</guimenuitem> |
|---|
| 626 | </menuchoice> |
|---|
| 627 | </entry> |
|---|
| 628 | <entry> |
|---|
| 629 | <xref linkend="array_lims" /> |
|---|
| 630 | </entry> |
|---|
| 631 | </row> |
|---|
| 632 | <row rowsep="1"> |
|---|
| 633 | <entry>Plate types</entry> |
|---|
| 634 | <entry> |
|---|
| 635 | <menuchoice> |
|---|
| 636 | <guimenu>Array LIMS</guimenu> |
|---|
| 637 | <guimenuitem>Plate types</guimenuitem> |
|---|
| 638 | </menuchoice> |
|---|
| 639 | </entry> |
|---|
| 640 | <entry> |
|---|
| 641 | <xref linkend="array_lims" /> |
|---|
| 642 | </entry> |
|---|
| 643 | </row> |
|---|
| 644 | <row rowsep="1"> |
|---|
| 645 | <entry>Plugins</entry> |
|---|
| 646 | <entry> |
|---|
| 647 | <menuchoice> |
|---|
| 648 | <guimenu>Administrate</guimenu> |
|---|
| 649 | <guimenuitem>Plugins</guimenuitem> |
|---|
| 650 | <guisubmenu>Definitions</guisubmenu> |
|---|
| 651 | </menuchoice> |
|---|
| 652 | </entry> |
|---|
| 653 | <entry> |
|---|
| 654 | <xref linkend="plugins" /> |
|---|
| 655 | </entry> |
|---|
| 656 | </row> |
|---|
| 657 | <row rowsep="1"> |
|---|
| 658 | <entry>Plugin configurations</entry> |
|---|
| 659 | <entry> |
|---|
| 660 | <menuchoice> |
|---|
| 661 | <guimenu>Administrate</guimenu> |
|---|
| 662 | <guimenuitem>Plugins</guimenuitem> |
|---|
| 663 | <guisubmenu>Configurations</guisubmenu> |
|---|
| 664 | </menuchoice> |
|---|
| 665 | </entry> |
|---|
| 666 | <entry> |
|---|
| 667 | <xref linkend="plugins.configuration" /> |
|---|
| 668 | </entry> |
|---|
| 669 | </row> |
|---|
| 670 | <row rowsep="1"> |
|---|
| 671 | <entry>Plugin types</entry> |
|---|
| 672 | <entry> |
|---|
| 673 | <menuchoice> |
|---|
| 674 | <guimenu>Administrate</guimenu> |
|---|
| 675 | <guimenuitem>Plugins</guimenuitem> |
|---|
| 676 | <guisubmenu>Types</guisubmenu> |
|---|
| 677 | </menuchoice> |
|---|
| 678 | </entry> |
|---|
| 679 | <entry> |
|---|
| 680 | <xref linkend="plugins" /> |
|---|
| 681 | </entry> |
|---|
| 682 | </row> |
|---|
| 683 | <row rowsep="1"> |
|---|
| 684 | <entry>Projects</entry> |
|---|
| 685 | <entry> |
|---|
| 686 | <menuchoice> |
|---|
| 687 | <guimenu>View</guimenu> |
|---|
| 688 | <guimenuitem>Projects</guimenuitem> |
|---|
| 689 | </menuchoice> |
|---|
| 690 | </entry> |
|---|
| 691 | <entry> |
|---|
| 692 | <xref linkend="project_permission" /> |
|---|
| 693 | </entry> |
|---|
| 694 | </row> |
|---|
| 695 | <row rowsep="1"> |
|---|
| 696 | <entry>Protocols</entry> |
|---|
| 697 | <entry> |
|---|
| 698 | <menuchoice> |
|---|
| 699 | <guimenu>Administrate</guimenu> |
|---|
| 700 | <guimenuitem>Protocols</guimenuitem> |
|---|
| 701 | </menuchoice> |
|---|
| 702 | </entry> |
|---|
| 703 | <entry></entry> |
|---|
| 704 | </row> |
|---|
| 705 | <row rowsep="1"> |
|---|
| 706 | <entry>Protocol types</entry> |
|---|
| 707 | <entry> |
|---|
| 708 | <menuchoice> |
|---|
| 709 | <guimenu>Administrate</guimenu> |
|---|
| 710 | <guimenuitem>Types</guimenuitem> |
|---|
| 711 | <guisubmenu>Protocol types</guisubmenu> |
|---|
| 712 | </menuchoice> |
|---|
| 713 | </entry> |
|---|
| 714 | <entry></entry> |
|---|
| 715 | </row> |
|---|
| 716 | <!-- ################ Q - Z ################ --> |
|---|
| 717 | <row> |
|---|
| 718 | <entry align="center" valign="middle" morerows="12"> |
|---|
| 719 | <keycap>Q-Z</keycap> |
|---|
| 720 | </entry> |
|---|
| 721 | <entry id="q-z" rowsep="1">Quota</entry> |
|---|
| 722 | <entry rowsep="1"> |
|---|
| 723 | <menuchoice> |
|---|
| 724 | <guimenu>Administrate</guimenu> |
|---|
| 725 | <guimenuitem>Quota</guimenuitem> |
|---|
| 726 | </menuchoice> |
|---|
| 727 | </entry> |
|---|
| 728 | <entry rowsep="1"></entry> |
|---|
| 729 | </row> |
|---|
| 730 | <row rowsep="1"> |
|---|
| 731 | <entry>Quota types</entry> |
|---|
| 732 | <entry> |
|---|
| 733 | <menuchoice> |
|---|
| 734 | <guimenu>Administrate</guimenu> |
|---|
| 735 | <guimenuitem>Types</guimenuitem> |
|---|
| 736 | <guisubmenu>Quota types</guisubmenu> |
|---|
| 737 | </menuchoice> |
|---|
| 738 | </entry> |
|---|
| 739 | <entry> |
|---|
| 740 | <xref linkend="user_administration.quota" /> |
|---|
| 741 | </entry> |
|---|
| 742 | </row> |
|---|
| 743 | <row rowsep="1"> |
|---|
| 744 | <entry>Raw bioassays</entry> |
|---|
| 745 | <entry> |
|---|
| 746 | <menuchoice> |
|---|
| 747 | <guimenu>View</guimenu> |
|---|
| 748 | <guimenuitem>Raw bioassays</guimenuitem> |
|---|
| 749 | </menuchoice> |
|---|
| 750 | </entry> |
|---|
| 751 | <entry> |
|---|
| 752 | <xref linkend="experiments_analysis.rawbioassay" /> |
|---|
| 753 | </entry> |
|---|
| 754 | </row> |
|---|
| 755 | <row rowsep="1"> |
|---|
| 756 | <entry>Removed items</entry> |
|---|
| 757 | <entry> |
|---|
| 758 | <menuchoice> |
|---|
| 759 | <guimenu>View</guimenu> |
|---|
| 760 | <guimenuitem>Trashcan</guimenuitem> |
|---|
| 761 | </menuchoice> |
|---|
| 762 | </entry> |
|---|
| 763 | <entry> |
|---|
| 764 | <xref linkend="trashcan" /> |
|---|
| 765 | </entry> |
|---|
| 766 | </row> |
|---|
| 767 | <row rowsep="1"> |
|---|
| 768 | <entry>Reporter lists</entry> |
|---|
| 769 | <entry> |
|---|
| 770 | <menuchoice> |
|---|
| 771 | <guimenu>View</guimenu> |
|---|
| 772 | <guimenuitem>Reporter lists</guimenuitem> |
|---|
| 773 | </menuchoice> |
|---|
| 774 | </entry> |
|---|
| 775 | <entry></entry> |
|---|
| 776 | </row> |
|---|
| 777 | <row rowsep="1"> |
|---|
| 778 | <entry>Reporter types</entry> |
|---|
| 779 | <entry> |
|---|
| 780 | <menuchoice> |
|---|
| 781 | <guimenu>Administrate</guimenu> |
|---|
| 782 | <guimenuitem>Types</guimenuitem> |
|---|
| 783 | <guisubmenu>Reporter types</guisubmenu> |
|---|
| 784 | </menuchoice> |
|---|
| 785 | </entry> |
|---|
| 786 | <entry></entry> |
|---|
| 787 | </row> |
|---|
| 788 | <row rowsep="1"> |
|---|
| 789 | <entry>Reporters</entry> |
|---|
| 790 | <entry> |
|---|
| 791 | <menuchoice> |
|---|
| 792 | <guimenu>View</guimenu> |
|---|
| 793 | <guimenuitem>Reporters</guimenuitem> |
|---|
| 794 | </menuchoice> |
|---|
| 795 | </entry> |
|---|
| 796 | <entry></entry> |
|---|
| 797 | </row> |
|---|
| 798 | <row rowsep="1"> |
|---|
| 799 | <entry>Samples</entry> |
|---|
| 800 | <entry> |
|---|
| 801 | <menuchoice> |
|---|
| 802 | <guimenu>View</guimenu> |
|---|
| 803 | <guimenuitem>Samples</guimenuitem> |
|---|
| 804 | </menuchoice> |
|---|
| 805 | </entry> |
|---|
| 806 | <entry></entry> |
|---|
| 807 | </row> |
|---|
| 808 | <row rowsep="1"> |
|---|
| 809 | <entry>Scans</entry> |
|---|
| 810 | <entry> |
|---|
| 811 | <menuchoice> |
|---|
| 812 | <guimenu>View</guimenu> |
|---|
| 813 | <guimenuitem>Scans</guimenuitem> |
|---|
| 814 | </menuchoice> |
|---|
| 815 | </entry> |
|---|
| 816 | <entry> |
|---|
| 817 | <xref linkend="experiments_analysis.scans" /> |
|---|
| 818 | </entry> |
|---|
| 819 | </row> |
|---|
| 820 | <row rowsep="1"> |
|---|
| 821 | <entry>Sessions</entry> |
|---|
| 822 | <entry> |
|---|
| 823 | <menuchoice> |
|---|
| 824 | <guimenu>View</guimenu> |
|---|
| 825 | <guimenuitem>Sessions</guimenuitem> |
|---|
| 826 | </menuchoice> |
|---|
| 827 | </entry> |
|---|
| 828 | <entry></entry> |
|---|
| 829 | </row> |
|---|
| 830 | <row rowsep="1"> |
|---|
| 831 | <entry>Software</entry> |
|---|
| 832 | <entry> |
|---|
| 833 | <menuchoice> |
|---|
| 834 | <guimenu>Administrate</guimenu> |
|---|
| 835 | <guimenuitem>Software</guimenuitem> |
|---|
| 836 | </menuchoice> |
|---|
| 837 | </entry> |
|---|
| 838 | <entry> |
|---|
| 839 | <xref linkend="software" /> |
|---|
| 840 | </entry> |
|---|
| 841 | </row> |
|---|
| 842 | <row rowsep="1"> |
|---|
| 843 | <entry>Software types</entry> |
|---|
| 844 | <entry> |
|---|
| 845 | <menuchoice> |
|---|
| 846 | <guimenu>Administrate</guimenu> |
|---|
| 847 | <guimenuitem>Types</guimenuitem> |
|---|
| 848 | <guisubmenu>Software types</guisubmenu> |
|---|
| 849 | </menuchoice> |
|---|
| 850 | </entry> |
|---|
| 851 | <entry></entry> |
|---|
| 852 | </row> |
|---|
| 853 | <row rowsep="1"> |
|---|
| 854 | <entry>Users</entry> |
|---|
| 855 | <entry> |
|---|
| 856 | <menuchoice> |
|---|
| 857 | <guimenu>Administrate</guimenu> |
|---|
| 858 | <guimenuitem>Users</guimenuitem> |
|---|
| 859 | </menuchoice> |
|---|
| 860 | </entry> |
|---|
| 861 | <entry> |
|---|
| 862 | <xref linkend="user_administration" /> |
|---|
| 863 | </entry> |
|---|
| 864 | </row> |
|---|
| 865 | </tbody> |
|---|
| 866 | </tgroup> |
|---|
| 867 | </informaltable> |
|---|
| 868 | </simplesect> |
|---|
| 869 | </appendix> |
|---|
