1 | <?xml version="1.0" encoding="UTF-8"?> |
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2 | <!DOCTYPE chapter PUBLIC |
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3 | "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN" |
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4 | "../../../../lib/docbook/preprocess/dweiss-docbook-extensions.dtd"> |
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5 | <!-- |
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6 | $Id: api_overview.xml 3487 2007-06-13 17:56:05Z peter $ |
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7 | |
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8 | Copyright (C) Authors contributing to this file. |
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9 | |
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10 | This file is part of BASE - BioArray Software Environment. |
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11 | Available at http://base.thep.lu.se/ |
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12 | |
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13 | BASE is free software; you can redistribute it and/or |
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14 | modify it under the terms of the GNU General Public License |
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15 | as published by the Free Software Foundation; either version 2 |
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16 | of the License, or (at your option) any later version. |
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17 | |
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18 | BASE is distributed in the hope that it will be useful, |
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19 | but WITHOUT ANY WARRANTY; without even the implied warranty of |
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20 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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21 | GNU General Public License for more details. |
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22 | |
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23 | You should have received a copy of the GNU General Public License |
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24 | along with this program; if not, write to the Free Software |
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25 | Foundation, Inc., 59 Temple Place - Suite 330, |
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26 | Boston, MA 02111-1307, USA. |
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27 | --> |
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28 | |
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29 | <chapter id="api_overview"> |
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30 | <?dbhtml dir="api"?> |
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31 | <title>API overview (how to use and code examples)</title> |
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32 | |
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33 | <sect1 id="api_overview.public_api"> |
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34 | <title>The Public API of BASE</title> |
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35 | |
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36 | <para> |
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37 | Not all public classes and methods in the <filename>BASE2Core.jar</filename> |
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38 | and other JAR files shipped with BASE are considered as |
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39 | <emphasis>Public API</emphasis>. This is important knowledge |
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40 | since we will always try to maintain backwards compatibility |
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41 | for classes that are part of the public API. For other |
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42 | classes, changes may be instroduced at any time without |
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43 | notice or specific documentation. In other words: |
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44 | </para> |
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45 | |
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46 | <note> |
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47 | <title>Only use the public API when developing plug-ins</title> |
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48 | <para> |
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49 | This will maximize the chance that you plug-in will continue |
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50 | to work with the next BASE release. If you use the non-public API |
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51 | you do so at your own risk. |
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52 | </para> |
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53 | </note> |
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54 | |
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55 | <para> |
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56 | See the <ulink url="http://base.thep.lu.se/chrome/site/doc/api/index.html" |
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57 | >javadoc</ulink> for information about |
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58 | what parts of the API that contributes to the public API. |
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59 | Methods, classes and other elements that have been tagged as |
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60 | <code>@deprecated</code> should be considered as part of the internal API |
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61 | and may be removed in a subsequent relase without warning. |
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62 | </para> |
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63 | |
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64 | <para> |
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65 | See <xref linkend="appendix.incompatible" /> to read more about |
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66 | changes that have been introduced by each release. |
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67 | </para> |
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68 | |
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69 | <sect2 id="api_overview.compatibility"> |
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70 | <title>What is backwards compatibility?</title> |
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71 | |
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72 | <para> |
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73 | There is a great article about this subject on <ulink |
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74 | url="http://wiki.eclipse.org/index.php/Evolving_Java-based_APIs" |
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75 | >http://wiki.eclipse.org/index.php/Evolving_Java-based_APIs</ulink>. |
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76 | This is what we will try to comply with. If you do not want to |
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77 | read the entire article, here are some of the most important points: |
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78 | </para> |
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79 | |
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80 | |
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81 | <sect3 id="api_overview.compatibility.binary"> |
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82 | <title>Binary compatibility</title> |
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83 | <para> |
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84 | <blockquote> |
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85 | Pre-existing Client binaries must link and run with new releases of the |
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86 | Component without recompiling. |
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87 | </blockquote> |
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88 | |
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89 | For example: |
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90 | <itemizedlist> |
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91 | <listitem> |
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92 | <para> |
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93 | We cannot change the number or types of parameters to a method |
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94 | or constructor. |
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95 | </para> |
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96 | </listitem> |
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97 | <listitem> |
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98 | <para> |
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99 | We cannot add or change methods to interfaces that are intended |
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100 | to be implemented by plug-in or client code. |
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101 | </para> |
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102 | </listitem> |
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103 | </itemizedlist> |
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104 | </para> |
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105 | </sect3> |
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106 | |
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107 | <sect3 id="api_overview.compatibility.contract"> |
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108 | <title>Contract compatibility</title> |
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109 | <para> |
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110 | <blockquote> |
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111 | API changes must not invalidate formerly legal Client code. |
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112 | </blockquote> |
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113 | |
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114 | For example: |
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115 | <itemizedlist> |
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116 | <listitem> |
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117 | <para> |
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118 | We cannot change the implementation of a method to do |
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119 | things differently than before. For example, allow <constant>null</constant> |
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120 | as a return value when it was not allowed before. |
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121 | </para> |
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122 | </listitem> |
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123 | </itemizedlist> |
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124 | |
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125 | <note> |
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126 | <para> |
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127 | Sometimes there is a very fine line between what is considered a |
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128 | bug and what is considered a feature. For example, if the |
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129 | actual implementation does not do what the javadoc says, |
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130 | do we change the code or do we change the documentation? |
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131 | This has to be considered from case to case and depends on |
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132 | the age of the code and if we expect plug-ins and clients to be |
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133 | affected by it or not. |
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134 | </para> |
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135 | </note> |
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136 | </para> |
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137 | </sect3> |
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138 | |
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139 | <sect3 id="api_overview.compatibility.source"> |
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140 | <title>Source code compatibility</title> |
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141 | <para> |
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142 | This is not an important matter and is not always possible to |
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143 | achieve. In most cases, the problems are easy to fix. |
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144 | Example: |
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145 | |
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146 | <itemizedlist> |
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147 | <listitem> |
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148 | <para> |
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149 | Adding a class may break a plug-in or client that import |
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150 | classes with <constant>.*</constant> if the same class name |
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151 | exists in another package. |
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152 | </para> |
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153 | </listitem> |
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154 | </itemizedlist> |
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155 | </para> |
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156 | </sect3> |
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157 | </sect2> |
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158 | </sect1> |
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159 | |
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160 | <sect1 id="api_overview.data_api"> |
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161 | <title>The database schema and the Data Layer API</title> |
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162 | |
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163 | <para> |
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164 | This documentation is only available in the old format. |
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165 | See <ulink url="http://base.thep.lu.se/chrome/site/doc/development/overview/data/index.html" |
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166 | >http://base.thep.lu.se/chrome/site/doc/development/overview/data/index.html</ulink> |
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167 | </para> |
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168 | |
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169 | </sect1> |
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170 | |
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171 | <sect1 id="api_overview.core_api"> |
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172 | <title>The Core API</title> |
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173 | <para> |
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174 | TODO |
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175 | </para> |
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176 | </sect1> |
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177 | |
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178 | <sect1 id="api_overview.query_api"> |
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179 | <title>The Query API</title> |
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180 | <para> |
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181 | This documentation is only available in the old format. |
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182 | See <ulink url="http://base.thep.lu.se/chrome/site/doc/development/overview/query/index.html" |
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183 | >http://base.thep.lu.se/chrome/site/doc/development/overview/query/index.html</ulink> |
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184 | </para> |
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185 | |
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186 | </sect1> |
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187 | |
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188 | <sect1 id="api_overview.dynamic_and_batch_api"> |
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189 | <title>Analysis and the Dynamic and Batch API:s</title> |
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190 | <para> |
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191 | This documentation is only available in the old format. |
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192 | See <ulink url="http://base.thep.lu.se/chrome/site/doc/development/overview/dynamic/index.html" |
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193 | >http://base.thep.lu.se/chrome/site/doc/development/overview/dynamic/index.html</ulink> |
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194 | </para> |
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195 | </sect1> |
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196 | |
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197 | <sect1 id="api_overview.other_api"> |
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198 | <title>Other useful classes and methods</title> |
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199 | <para> |
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200 | TODO |
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201 | </para> |
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202 | </sect1> |
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203 | |
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204 | </chapter> |
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