source: trunk/doc/src/docbook/user/analysis.xml @ 5783

Last change on this file since 5783 was 5783, checked in by Nicklas Nordborg, 10 years ago

References #1590: Documentation cleanup

Experiments and analysis chapter.

  • Property svn:eol-style set to native
  • Property svn:keywords set to Id Date
File size: 2.9 KB
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1<?xml version="1.0" encoding="UTF-8"?>
2<!DOCTYPE sect1 PUBLIC
3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
4    "../../../../lib/docbook/preprocess/dweiss-docbook-extensions.dtd">
5<!--
6  $Id: analysis.xml 5783 2011-10-05 10:34:24Z nicklas $
7
8  Copyright (C) 2007 Jari Häkkinen, Peter Johansson, Nicklas Nordborg
9
10  This file is part of BASE - BioArray Software Environment.
11  Available at http://base.thep.lu.se/
12
13  BASE is free software; you can redistribute it and/or
14  modify it under the terms of the GNU General Public License
15  as published by the Free Software Foundation; either version 3
16  of the License, or (at your option) any later version.
17
18  BASE is distributed in the hope that it will be useful,
19  but WITHOUT ANY WARRANTY; without even the implied warranty of
20  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
21  GNU General Public License for more details.
22
23  You should have received a copy of the GNU General Public License
24  along with BASE. If not, see <http://www.gnu.org/licenses/>.
25-->
26
27<sect1 id="experiments_analysis.analysis">
28  <?dbhtml filename="analysis.html" ?>
29  <title>Analysing data within BASE</title>
30  <para>TODO</para>
31 
32  <sect2 id="experiments_analysis.bioassaysets">
33    <title>Transformations and bioassay sets</title>
34    <para>TODO</para>
35 
36    <sect3 id="experiments_analysis.rootbioassayset">
37      <title>The root bioassay set</title>
38      <para>TODO</para>
39    </sect3>
40   
41    <sect3 id="experiments_analysis.overviewplots">
42      <title>Overview plots</title>
43      <para>TODO</para>
44    </sect3>
45   
46  </sect2>
47 
48  <sect2 id="experiments_analysis.filtering">
49    <title>Filtering data</title>
50    <para>TODO</para>
51   
52    <sect3 id="experiments_analysis.formulas">
53      <title>Formulas</title>
54      <para>TODO</para>
55     
56    </sect3>
57  </sect2>
58 
59  <sect2 id="experiments_analysis.normalization">
60    <title>Normalizing data</title>
61    <para>TODO</para>
62   
63  </sect2>
64 
65  <sect2 id="experiments_analysis.plugins">
66    <title>Other analysis plug-ins</title>
67    <para>TODO</para>
68   
69  </sect2>
70 
71 
72  <sect2 id="experiments_analysis.plotter">
73    <title>The plot tool</title>
74    <para>TODO</para>
75   
76    <sect3 id="experiments_analysis.scatterplot">
77      <title>Scatter plots</title>
78      <para>TODO</para>
79    </sect3>
80   
81    <sect3 id="experiments_analysis.histogramplot">
82      <title>Histogram plots</title>
83      <para>TODO</para>
84    </sect3>
85   
86    <sect3 id="experiments_analysis.filterplot">
87      <title>Filtering plots</title>
88      <para>TODO</para>
89    </sect3>
90   
91    <sect3 id="experiments_analysis.saveplot">
92      <title>Save plots</title>
93      <para>TODO</para>
94    </sect3>
95   
96  </sect2>
97 
98  <sect2 id="experiments_analysis.explorer">
99    <title>Experiment explorer</title>
100    <para>TODO</para>
101   
102    <sect3 id="experiments_analysis.explorer.reporterview">
103      <title>Reporter view</title>
104      <para>TODO</para>
105    </sect3>
106   
107    <sect3 id="experiments_analysis.explorer.reportersearch">
108      <title>Reporter search</title>
109      <para>TODO</para>
110    </sect3>
111   
112  </sect2>
113 
114</sect1>
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