source: trunk/doc/src/docbook/userdoc/analyse_in_base.xml @ 3318

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE sect1 PUBLIC 
    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN" 
    "../../../../lib/docbook/preprocess/dweiss-docbook-extensions.dtd">
<!--
  $Id: experiments_analysis.xml 3308 2007-05-08 12:34:07Z nicklas $

  Copyright (C) Authors contributing to this file.

  This file is part of BASE - BioArray Software Environment.
  Available at http://base.thep.lu.se/

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-->

<sect1 id="experiments_analysis.analysis">
  <title>Analysing data within BASE</title>
  <para>TODO</para>
  
  <sect2 id="experiments_analysis.bioassaysets">
    <title>Transformations and bioassay sets</title>
    <para>TODO</para>
  
    <sect3 id="experiments_analysis.rootbioassayset">
      <title>The root bioassay set</title>
      <para>TODO</para>
    </sect3>
    
    <sect3 id="experiments_analysis.overviewplots">
      <title>Overview plots</title>
      <para>TODO</para>
    </sect3>
    
  </sect2>
  
  <sect2 id="experiments_analysis.filtering">
    <title>Filtering data</title>
    <para>TODO</para>
    
    <sect3 id="experiments_analysis.formulas">
      <title>Formulas</title>
      <para>TODO</para>
      
    </sect3>
  </sect2>
  
  <sect2 id="experiments_analysis.normalization">
    <title>Normalizing data</title>
    <para>TODO</para>
    
  </sect2>
  
  <sect2 id="experiments_analysis.plugins">
    <title>Other analysis plug-ins</title>
    <para>TODO</para>
    
  </sect2>
  
  
  <sect2 id="experiments_analysis.plotter">
    <title>The plot tool</title>
    <para>TODO</para>
    
    <sect3 id="experiments_analysis.scatterplot">
      <title>Scatter plots</title>
      <para>TODO</para>
    </sect3>
    
    <sect3 id="experiments_analysis.histogramplot">
      <title>Histogram plots</title>
      <para>TODO</para>
    </sect3>
    
    <sect3 id="experiments_analysis.filterplot">
      <title>Filtering plots</title>
      <para>TODO</para>
    </sect3>
    
    <sect3 id="experiments_analysis.saveplot">
      <title>Save plots</title>
      <para>TODO</para>
    </sect3>
    
  </sect2>
  
  <sect2 id="experiments_analysis.explorer">
    <title>Experiment explorer</title>
    <para>TODO</para>
    
    <sect3 id="experiments_analysis.explorer.reporterview">
      <title>Reporter view</title>
      <para>TODO</para>
    </sect3>
    
    <sect3 id="experiments_analysis.explorer.reportersearch">
      <title>Reporter search</title>
      <para>TODO</para>
    </sect3>
    
  </sect2>
  
</sect1>