source: trunk/doc/src/docbook/userdoc/analyse_in_base.xml @ 3318

Last change on this file since 3318 was 3318, checked in by Nicklas Nordborg, 14 years ago

Split 'Experiments and analysis' into several files.
Wrote 'Scans and images' section and part of 'Raw bioassays' section.

File size: 3.1 KB
Line 
1<?xml version="1.0" encoding="UTF-8"?>
2<!DOCTYPE sect1 PUBLIC
3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
4    "../../../../lib/docbook/preprocess/dweiss-docbook-extensions.dtd">
5<!--
6  $Id: experiments_analysis.xml 3308 2007-05-08 12:34:07Z nicklas $
7
8  Copyright (C) Authors contributing to this file.
9
10  This file is part of BASE - BioArray Software Environment.
11  Available at http://base.thep.lu.se/
12
13  BASE is free software; you can redistribute it and/or
14  modify it under the terms of the GNU General Public License
15  as published by the Free Software Foundation; either version 2
16  of the License, or (at your option) any later version.
17
18  BASE is distributed in the hope that it will be useful,
19  but WITHOUT ANY WARRANTY; without even the implied warranty of
20  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
21  GNU General Public License for more details.
22
23  You should have received a copy of the GNU General Public License
24  along with this program; if not, write to the Free Software
25  Foundation, Inc., 59 Temple Place - Suite 330,
26  Boston, MA  02111-1307, USA.
27-->
28
29<sect1 id="experiments_analysis.analysis">
30  <title>Analysing data within BASE</title>
31  <para>TODO</para>
32 
33  <sect2 id="experiments_analysis.bioassaysets">
34    <title>Transformations and bioassay sets</title>
35    <para>TODO</para>
36 
37    <sect3 id="experiments_analysis.rootbioassayset">
38      <title>The root bioassay set</title>
39      <para>TODO</para>
40    </sect3>
41   
42    <sect3 id="experiments_analysis.overviewplots">
43      <title>Overview plots</title>
44      <para>TODO</para>
45    </sect3>
46   
47  </sect2>
48 
49  <sect2 id="experiments_analysis.filtering">
50    <title>Filtering data</title>
51    <para>TODO</para>
52   
53    <sect3 id="experiments_analysis.formulas">
54      <title>Formulas</title>
55      <para>TODO</para>
56     
57    </sect3>
58  </sect2>
59 
60  <sect2 id="experiments_analysis.normalization">
61    <title>Normalizing data</title>
62    <para>TODO</para>
63   
64  </sect2>
65 
66  <sect2 id="experiments_analysis.plugins">
67    <title>Other analysis plug-ins</title>
68    <para>TODO</para>
69   
70  </sect2>
71 
72 
73  <sect2 id="experiments_analysis.plotter">
74    <title>The plot tool</title>
75    <para>TODO</para>
76   
77    <sect3 id="experiments_analysis.scatterplot">
78      <title>Scatter plots</title>
79      <para>TODO</para>
80    </sect3>
81   
82    <sect3 id="experiments_analysis.histogramplot">
83      <title>Histogram plots</title>
84      <para>TODO</para>
85    </sect3>
86   
87    <sect3 id="experiments_analysis.filterplot">
88      <title>Filtering plots</title>
89      <para>TODO</para>
90    </sect3>
91   
92    <sect3 id="experiments_analysis.saveplot">
93      <title>Save plots</title>
94      <para>TODO</para>
95    </sect3>
96   
97  </sect2>
98 
99  <sect2 id="experiments_analysis.explorer">
100    <title>Experiment explorer</title>
101    <para>TODO</para>
102   
103    <sect3 id="experiments_analysis.explorer.reporterview">
104      <title>Reporter view</title>
105      <para>TODO</para>
106    </sect3>
107   
108    <sect3 id="experiments_analysis.explorer.reportersearch">
109      <title>Reporter search</title>
110      <para>TODO</para>
111    </sect3>
112   
113  </sect2>
114 
115</sect1>
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