1 | <?xml version="1.0" encoding="UTF-8"?> |
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2 | <!DOCTYPE sect1 PUBLIC |
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3 | "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN" |
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4 | "../../../../lib/docbook/preprocess/dweiss-docbook-extensions.dtd"> |
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5 | <!-- |
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6 | $Id: analyse_in_base.xml 3651 2007-08-10 10:17:30Z jari $ |
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7 | |
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8 | Copyright (C) Authors contributing to this file. |
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9 | |
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10 | This file is part of BASE - BioArray Software Environment. |
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11 | Available at http://base.thep.lu.se/ |
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12 | |
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13 | BASE is free software; you can redistribute it and/or |
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14 | modify it under the terms of the GNU General Public License |
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15 | as published by the Free Software Foundation; either version 2 |
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16 | of the License, or (at your option) any later version. |
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17 | |
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18 | BASE is distributed in the hope that it will be useful, |
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19 | but WITHOUT ANY WARRANTY; without even the implied warranty of |
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20 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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21 | GNU General Public License for more details. |
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22 | |
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23 | You should have received a copy of the GNU General Public License |
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24 | along with this program; if not, write to the Free Software |
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25 | Foundation, Inc., 59 Temple Place - Suite 330, |
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26 | Boston, MA 02111-1307, USA. |
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27 | --> |
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28 | |
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29 | <sect1 id="experiments_analysis.analysis"> |
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30 | <title>Analysing data within BASE</title> |
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31 | <para>TODO</para> |
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32 | |
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33 | <sect2 id="experiments_analysis.bioassaysets"> |
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34 | <title>Transformations and bioassay sets</title> |
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35 | <para>TODO</para> |
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36 | |
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37 | <sect3 id="experiments_analysis.rootbioassayset"> |
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38 | <title>The root bioassay set</title> |
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39 | <para>TODO</para> |
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40 | </sect3> |
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41 | |
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42 | <sect3 id="experiments_analysis.overviewplots"> |
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43 | <title>Overview plots</title> |
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44 | <para>TODO</para> |
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45 | </sect3> |
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46 | |
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47 | </sect2> |
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48 | |
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49 | <sect2 id="experiments_analysis.filtering"> |
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50 | <title>Filtering data</title> |
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51 | <para>TODO</para> |
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52 | |
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53 | <sect3 id="experiments_analysis.formulas"> |
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54 | <title>Formulas</title> |
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55 | <para>TODO</para> |
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56 | |
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57 | </sect3> |
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58 | </sect2> |
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59 | |
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60 | <sect2 id="experiments_analysis.normalization"> |
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61 | <title>Normalizing data</title> |
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62 | <para>TODO</para> |
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63 | |
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64 | </sect2> |
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65 | |
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66 | <sect2 id="experiments_analysis.plugins"> |
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67 | <title>Other analysis plug-ins</title> |
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68 | <para>TODO</para> |
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69 | |
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70 | </sect2> |
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71 | |
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72 | |
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73 | <sect2 id="experiments_analysis.plotter"> |
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74 | <title>The plot tool</title> |
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75 | <para>TODO</para> |
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76 | |
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77 | <sect3 id="experiments_analysis.scatterplot"> |
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78 | <title>Scatter plots</title> |
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79 | <para>TODO</para> |
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80 | </sect3> |
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81 | |
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82 | <sect3 id="experiments_analysis.histogramplot"> |
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83 | <title>Histogram plots</title> |
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84 | <para>TODO</para> |
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85 | </sect3> |
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86 | |
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87 | <sect3 id="experiments_analysis.filterplot"> |
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88 | <title>Filtering plots</title> |
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89 | <para>TODO</para> |
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90 | </sect3> |
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91 | |
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92 | <sect3 id="experiments_analysis.saveplot"> |
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93 | <title>Save plots</title> |
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94 | <para>TODO</para> |
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95 | </sect3> |
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96 | |
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97 | </sect2> |
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98 | |
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99 | <sect2 id="experiments_analysis.explorer"> |
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100 | <title>Experiment explorer</title> |
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101 | <para>TODO</para> |
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102 | |
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103 | <sect3 id="experiments_analysis.explorer.reporterview"> |
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104 | <title>Reporter view</title> |
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105 | <para>TODO</para> |
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106 | </sect3> |
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107 | |
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108 | <sect3 id="experiments_analysis.explorer.reportersearch"> |
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109 | <title>Reporter search</title> |
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110 | <para>TODO</para> |
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111 | </sect3> |
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112 | |
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113 | </sect2> |
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114 | |
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115 | </sect1> |
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