source: trunk/doc/src/docbook/userdoc/analyse_in_base.xml @ 3651

Last change on this file since 3651 was 3651, checked in by Jari Häkkinen, 16 years ago

Fixed svn properties issues.

  • Property svn:eol-style set to native
  • Property svn:keywords set to Id Date
File size: 2.9 KB
Line 
1<?xml version="1.0" encoding="UTF-8"?>
2<!DOCTYPE sect1 PUBLIC
3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
4    "../../../../lib/docbook/preprocess/dweiss-docbook-extensions.dtd">
5<!--
6  $Id: analyse_in_base.xml 3651 2007-08-10 10:17:30Z jari $
7
8  Copyright (C) Authors contributing to this file.
9
10  This file is part of BASE - BioArray Software Environment.
11  Available at http://base.thep.lu.se/
12
13  BASE is free software; you can redistribute it and/or
14  modify it under the terms of the GNU General Public License
15  as published by the Free Software Foundation; either version 2
16  of the License, or (at your option) any later version.
17
18  BASE is distributed in the hope that it will be useful,
19  but WITHOUT ANY WARRANTY; without even the implied warranty of
20  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
21  GNU General Public License for more details.
22
23  You should have received a copy of the GNU General Public License
24  along with this program; if not, write to the Free Software
25  Foundation, Inc., 59 Temple Place - Suite 330,
26  Boston, MA  02111-1307, USA.
27-->
28
29<sect1 id="experiments_analysis.analysis">
30  <title>Analysing data within BASE</title>
31  <para>TODO</para>
32 
33  <sect2 id="experiments_analysis.bioassaysets">
34    <title>Transformations and bioassay sets</title>
35    <para>TODO</para>
36 
37    <sect3 id="experiments_analysis.rootbioassayset">
38      <title>The root bioassay set</title>
39      <para>TODO</para>
40    </sect3>
41   
42    <sect3 id="experiments_analysis.overviewplots">
43      <title>Overview plots</title>
44      <para>TODO</para>
45    </sect3>
46   
47  </sect2>
48 
49  <sect2 id="experiments_analysis.filtering">
50    <title>Filtering data</title>
51    <para>TODO</para>
52   
53    <sect3 id="experiments_analysis.formulas">
54      <title>Formulas</title>
55      <para>TODO</para>
56     
57    </sect3>
58  </sect2>
59 
60  <sect2 id="experiments_analysis.normalization">
61    <title>Normalizing data</title>
62    <para>TODO</para>
63   
64  </sect2>
65 
66  <sect2 id="experiments_analysis.plugins">
67    <title>Other analysis plug-ins</title>
68    <para>TODO</para>
69   
70  </sect2>
71 
72 
73  <sect2 id="experiments_analysis.plotter">
74    <title>The plot tool</title>
75    <para>TODO</para>
76   
77    <sect3 id="experiments_analysis.scatterplot">
78      <title>Scatter plots</title>
79      <para>TODO</para>
80    </sect3>
81   
82    <sect3 id="experiments_analysis.histogramplot">
83      <title>Histogram plots</title>
84      <para>TODO</para>
85    </sect3>
86   
87    <sect3 id="experiments_analysis.filterplot">
88      <title>Filtering plots</title>
89      <para>TODO</para>
90    </sect3>
91   
92    <sect3 id="experiments_analysis.saveplot">
93      <title>Save plots</title>
94      <para>TODO</para>
95    </sect3>
96   
97  </sect2>
98 
99  <sect2 id="experiments_analysis.explorer">
100    <title>Experiment explorer</title>
101    <para>TODO</para>
102   
103    <sect3 id="experiments_analysis.explorer.reporterview">
104      <title>Reporter view</title>
105      <para>TODO</para>
106    </sect3>
107   
108    <sect3 id="experiments_analysis.explorer.reportersearch">
109      <title>Reporter search</title>
110      <para>TODO</para>
111    </sect3>
112   
113  </sect2>
114 
115</sect1>
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