source: trunk/misc/mage/rawdatatypes/QT_Affymetrix.xml @ 2925

Last change on this file since 2925 was 2925, checked in by Jari Häkkinen, 17 years ago

Added svndigest:ignore property tom some items.
  • Property svn:eol-style set to native
  • Property svn:keywords set to Id
  • Property svndigest:ignore set to *
File size: 24.8 KB
Line 
1<?xml version="1.0" encoding="ISO-8859-1" standalone="no"?>
2<?xml-stylesheet type="text/xsl" href="QT.xsl"?>
3<!DOCTYPE MAGE-ML PUBLIC "-//OMG//DTD MAGE-ML 1.0//EN" "http://schema.omg.org/lsr/gene_expression/1.0/MAGE-ML.dtd">
4<MAGE-ML identifier="EBI:eleh:Affymetrix QT XML">
5  <BioAssay_package>
6    <Channel_assnlist>
7      <Channel identifier="ebi.ac.uk:Channel:biotin" name="Biotin channel">
8      </Channel>
9    </Channel_assnlist>
10  </BioAssay_package>
11<QuantitationType_package>
12    <QuantitationType_assnlist>
13      <DerivedSignal identifier="Affymetrix:QuantitationType:CHPAvgDiff" isBackground="0">
14  <Descriptions_assnlist>
15    <Description text="Average intensity difference.">
16    </Description>
17  </Descriptions_assnlist>
18  <Channel_assnref>
19    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
20  </Channel_assnref>
21  <Scale_assn>
22    <OntologyEntry category="Scale" value="linear_scale">
23    </OntologyEntry>
24  </Scale_assn>
25  <DataType_assn>
26    <OntologyEntry category="DataType" value="float">
27    </OntologyEntry>
28  </DataType_assn>
29      </DerivedSignal>
30      <DerivedSignal identifier="Affymetrix:QuantitationType:CHPLogAvg" isBackground="0">
31  <Descriptions_assnlist>
32    <Description text="Average log ratio.">
33    </Description>
34  </Descriptions_assnlist>
35  <Channel_assnref>
36    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
37  </Channel_assnref>
38  <Scale_assn>
39    <OntologyEntry category="Scale" value="log_base_10">
40    </OntologyEntry>
41  </Scale_assn>
42  <DataType_assn>
43    <OntologyEntry category="DataType" value="float">
44    </OntologyEntry>
45  </DataType_assn>
46      </DerivedSignal>
47      <DerivedSignal identifier="Affymetrix:QuantitationType:CHPSignal" isBackground="0">
48  <Descriptions_assnlist>
49    <Description text="A measure of the relative abundance of a transcript.">
50    </Description>
51  </Descriptions_assnlist>
52  <Channel_assnref>
53    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
54  </Channel_assnref>
55  <Scale_assn>
56    <OntologyEntry category="Scale" value="linear_scale">
57    </OntologyEntry>
58  </Scale_assn>
59  <DataType_assn>
60    <OntologyEntry category="DataType" value="float">
61    </OntologyEntry>
62  </DataType_assn>
63      </DerivedSignal>
64      <MeasuredSignal identifier="Affymetrix:QuantitationType:CELIntensity" isBackground="0">
65  <Descriptions_assnlist>
66    <Description text="The intensity value of the probe. Represents the 75th percentile among the DAT file intensity values of the pixels in the feature.">
67    </Description>
68  </Descriptions_assnlist>
69  <Channel_assnref>
70    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
71  </Channel_assnref>
72  <Scale_assn>
73    <OntologyEntry category="Scale" value="linear_scale">
74    </OntologyEntry>
75  </Scale_assn>
76  <DataType_assn>
77    <OntologyEntry category="DataType" value="float">
78    </OntologyEntry>
79  </DataType_assn>
80      </MeasuredSignal>
81      <PresentAbsent identifier="Affymetrix:QuantitationType:CHPAbsCall" isBackground="0">
82  <Descriptions_assnlist>
83    <Description text="The call in an absolute analysis that indicates if the transcript was present (P), absent (A), or marginal (M).">
84    </Description>
85  </Descriptions_assnlist>
86  <Channel_assnref>
87    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
88  </Channel_assnref>
89  <Scale_assn>
90    <OntologyEntry category="Scale" value="unscaled">
91    </OntologyEntry>
92  </Scale_assn>
93  <DataType_assn>
94    <OntologyEntry category="DataType" value="string_datatype">
95    </OntologyEntry>
96  </DataType_assn>
97      </PresentAbsent>
98      <PresentAbsent identifier="Affymetrix:QuantitationType:CHPChange" isBackground="0">
99  <Descriptions_assnlist>
100    <Description text="A call indicating an Increase (I), Marginal Increase (MI), No Change (NC), Decrease (D), or Marginal Decrease (MD) in transcript level between a baseline array and an experiment array. May also have the value &quot;No Call&quot;.">
101    </Description>
102  </Descriptions_assnlist>
103  <Channel_assnref>
104    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
105  </Channel_assnref>
106  <Scale_assn>
107    <OntologyEntry category="Scale" value="unscaled">
108    </OntologyEntry>
109  </Scale_assn>
110  <DataType_assn>
111    <OntologyEntry category="DataType" value="string_datatype">
112    </OntologyEntry>
113  </DataType_assn>
114      </PresentAbsent>
115      <PresentAbsent identifier="Affymetrix:QuantitationType:CHPDetection" isBackground="0">
116  <Descriptions_assnlist>
117    <Description text="A measurement indicating if the transcript was detected (Present), not detected (Absent) or marginally detected (Marginal). Can be one of &quot;A&quot;, &quot;M&quot;, &quot;P&quot; or &quot;No Call&quot;.">
118    </Description>
119  </Descriptions_assnlist>
120  <Channel_assnref>
121    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
122  </Channel_assnref>
123  <Scale_assn>
124    <OntologyEntry category="Scale" value="unscaled">
125    </OntologyEntry>
126  </Scale_assn>
127  <DataType_assn>
128    <OntologyEntry category="DataType" value="string_datatype">
129    </OntologyEntry>
130  </DataType_assn>
131      </PresentAbsent>
132      <PresentAbsent identifier="Affymetrix:QuantitationType:CHPDiffCall" isBackground="0">
133  <Descriptions_assnlist>
134    <Description text="The comparison change call">
135    </Description>
136  </Descriptions_assnlist>
137  <Channel_assnref>
138    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
139  </Channel_assnref>
140  <Scale_assn>
141    <OntologyEntry category="Scale" value="unscaled">
142    </OntologyEntry>
143  </Scale_assn>
144  <DataType_assn>
145    <OntologyEntry category="DataType" value="string_datatype">
146    </OntologyEntry>
147  </DataType_assn>
148      </PresentAbsent>
149      <PValue identifier="Affymetrix:QuantitationType:CHPChangePvalue" isBackground="0">
150  <Descriptions_assnlist>
151    <Description text="Measures the probability that the expression levels of a probe set in two different arrays are the same or not. When the p-value is close to 0.5 they are likely to be the same. When the p-value is close to 0 the expression level in the experiment array is higher than that of the baseline array. When the p-value is close to 1, the expression level in the experiment arrays is lower than that of the baseline.">
152    </Description>
153  </Descriptions_assnlist>
154  <Channel_assnref>
155    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
156  </Channel_assnref>
157  <Scale_assn>
158    <OntologyEntry category="Scale" value="linear_scale">
159    </OntologyEntry>
160  </Scale_assn>
161  <DataType_assn>
162    <OntologyEntry category="DataType" value="float">
163    </OntologyEntry>
164  </DataType_assn>
165  <TargetQuantitationType_assnref>
166    <PresentAbsent_ref identifier="Affymetrix:QuantitationType:CHPChange"/>
167  </TargetQuantitationType_assnref>
168      </PValue>
169      <PValue identifier="Affymetrix:QuantitationType:CHPDetectionPvalue" isBackground="0">
170  <Descriptions_assnlist>
171    <Description text="See Detection p-value">
172    </Description>
173  </Descriptions_assnlist>
174  <Channel_assnref>
175    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
176  </Channel_assnref>
177  <Scale_assn>
178    <OntologyEntry category="Scale" value="linear_scale">
179    </OntologyEntry>
180  </Scale_assn>
181  <DataType_assn>
182    <OntologyEntry category="DataType" value="float">
183    </OntologyEntry>
184  </DataType_assn>
185  <TargetQuantitationType_assnref>
186    <PresentAbsent_ref identifier="Affymetrix:QuantitationType:CHPDetection"/>
187  </TargetQuantitationType_assnref>
188      </PValue>
189      <Ratio identifier="Affymetrix:QuantitationType:CHPDecRatio" isBackground="0">
190  <Descriptions_assnlist>
191    <Description text="The ratio of decreasing pairs to the total number of pairs.">
192    </Description>
193  </Descriptions_assnlist>
194  <Channel_assnref>
195    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
196  </Channel_assnref>
197  <Scale_assn>
198    <OntologyEntry category="Scale" value="linear_scale">
199    </OntologyEntry>
200  </Scale_assn>
201  <DataType_assn>
202    <OntologyEntry category="DataType" value="float">
203    </OntologyEntry>
204  </DataType_assn>
205      </Ratio>
206      <Ratio identifier="Affymetrix:QuantitationType:CHPDPos-DNegRatio" isBackground="0">
207  <Descriptions_assnlist>
208    <Description text="The ratio of the change in positive to the change in negative pairs.">
209    </Description>
210  </Descriptions_assnlist>
211  <Channel_assnref>
212    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
213  </Channel_assnref>
214  <Scale_assn>
215    <OntologyEntry category="Scale" value="linear_scale">
216    </OntologyEntry>
217  </Scale_assn>
218  <DataType_assn>
219    <OntologyEntry category="DataType" value="float">
220    </OntologyEntry>
221  </DataType_assn>
222      </Ratio>
223      <Ratio identifier="Affymetrix:QuantitationType:CHPFoldChange" isBackground="0">
224  <Descriptions_assnlist>
225    <Description text="The fold change.">
226    </Description>
227  </Descriptions_assnlist>
228  <Channel_assnref>
229    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
230  </Channel_assnref>
231  <Scale_assn>
232    <OntologyEntry category="Scale" value="linear_scale">
233    </OntologyEntry>
234  </Scale_assn>
235  <DataType_assn>
236    <OntologyEntry category="DataType" value="float">
237    </OntologyEntry>
238  </DataType_assn>
239      </Ratio>
240      <Ratio identifier="Affymetrix:QuantitationType:CHPIncDecRatio" isBackground="0">
241  <Descriptions_assnlist>
242    <Description text="The ratio of increase to decrease pairs.">
243    </Description>
244  </Descriptions_assnlist>
245  <Channel_assnref>
246    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
247  </Channel_assnref>
248  <Scale_assn>
249    <OntologyEntry category="Scale" value="linear_scale">
250    </OntologyEntry>
251  </Scale_assn>
252  <DataType_assn>
253    <OntologyEntry category="DataType" value="float">
254    </OntologyEntry>
255  </DataType_assn>
256      </Ratio>
257      <Ratio identifier="Affymetrix:QuantitationType:CHPIncRatio" isBackground="0">
258  <Descriptions_assnlist>
259    <Description text="The ratio of increasing pairs to the total number of pairs.">
260    </Description>
261  </Descriptions_assnlist>
262  <Channel_assnref>
263    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
264  </Channel_assnref>
265  <Scale_assn>
266    <OntologyEntry category="Scale" value="linear_scale">
267    </OntologyEntry>
268  </Scale_assn>
269  <DataType_assn>
270    <OntologyEntry category="DataType" value="float">
271    </OntologyEntry>
272  </DataType_assn>
273      </Ratio>
274      <Ratio identifier="Affymetrix:QuantitationType:CHPPosFraction" isBackground="0">
275  <Descriptions_assnlist>
276    <Description text="The fraction of positive pairs.">
277    </Description>
278  </Descriptions_assnlist>
279  <Channel_assnref>
280    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
281  </Channel_assnref>
282  <Scale_assn>
283    <OntologyEntry category="Scale" value="linear_scale">
284    </OntologyEntry>
285  </Scale_assn>
286  <DataType_assn>
287    <OntologyEntry category="DataType" value="float">
288    </OntologyEntry>
289  </DataType_assn>
290      </Ratio>
291      <Ratio identifier="Affymetrix:QuantitationType:CHPPosNegRatio" isBackground="0">
292  <Descriptions_assnlist>
293    <Description text="The ratio of the positive to the negative pairs.">
294    </Description>
295  </Descriptions_assnlist>
296  <Channel_assnref>
297    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
298  </Channel_assnref>
299  <Scale_assn>
300    <OntologyEntry category="Scale" value="linear_scale">
301    </OntologyEntry>
302  </Scale_assn>
303  <DataType_assn>
304    <OntologyEntry category="DataType" value="float">
305    </OntologyEntry>
306  </DataType_assn>
307      </Ratio>
308      <Ratio identifier="Affymetrix:QuantitationType:CHPSignalLogRatio" isBackground="0">
309  <Descriptions_assnlist>
310    <Description text="The change in expression level for a transcript between a baseline and an experiment array. This change is expressed as the Log2 ratio.">
311    </Description>
312  </Descriptions_assnlist>
313  <Channel_assnref>
314    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
315  </Channel_assnref>
316  <Scale_assn>
317    <OntologyEntry category="Scale" value="log_base_2">
318    </OntologyEntry>
319  </Scale_assn>
320  <DataType_assn>
321    <OntologyEntry category="DataType" value="float">
322    </OntologyEntry>
323  </DataType_assn>
324      </Ratio>
325      <Ratio identifier="Affymetrix:QuantitationType:CHPSignalLogRatioHigh" isBackground="0">
326  <Descriptions_assnlist>
327    <Description text="The upper limit of the Signal Log Ratio within a 95% confidence interval.">
328    </Description>
329  </Descriptions_assnlist>
330  <Channel_assnref>
331    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
332  </Channel_assnref>
333  <Scale_assn>
334    <OntologyEntry category="Scale" value="log_base_2">
335    </OntologyEntry>
336  </Scale_assn>
337  <DataType_assn>
338    <OntologyEntry category="DataType" value="float">
339    </OntologyEntry>
340  </DataType_assn>
341      </Ratio>
342      <Ratio identifier="Affymetrix:QuantitationType:CHPSignalLogRatioLow" isBackground="0">
343  <Descriptions_assnlist>
344    <Description text="The lower limit of the Signal Log Ratio within a 95% confidence interval.">
345    </Description>
346  </Descriptions_assnlist>
347  <Channel_assnref>
348    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
349  </Channel_assnref>
350  <Scale_assn>
351    <OntologyEntry category="Scale" value="log_base_2">
352    </OntologyEntry>
353  </Scale_assn>
354  <DataType_assn>
355    <OntologyEntry category="DataType" value="float">
356    </OntologyEntry>
357  </DataType_assn>
358      </Ratio>
359      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CELIntensityStdev" isBackground="0">
360  <Descriptions_assnlist>
361    <Description text="The standard deviation of the intensity of the probe.">
362    </Description>
363  </Descriptions_assnlist>
364  <Channel_assnref>
365    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
366  </Channel_assnref>
367  <Scale_assn>
368    <OntologyEntry category="Scale" value="linear_scale">
369    </OntologyEntry>
370  </Scale_assn>
371  <DataType_assn>
372    <OntologyEntry category="DataType" value="float">
373    </OntologyEntry>
374  </DataType_assn>
375      </SpecializedQuantitationType>
376      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CELMask" isBackground="0">
377  <Descriptions_assnlist>
378    <Description text="A flag indicating that the probe was masked by the user.">
379    </Description>
380  </Descriptions_assnlist>
381  <Channel_assnref>
382    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
383  </Channel_assnref>
384  <Scale_assn>
385    <OntologyEntry category="Scale" value="linear_scale">
386    </OntologyEntry>
387  </Scale_assn>
388  <DataType_assn>
389    <OntologyEntry category="DataType" value="boolean">
390    </OntologyEntry>
391  </DataType_assn>
392      </SpecializedQuantitationType>
393      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CELOutlier" isBackground="0">
394  <Descriptions_assnlist>
395    <Description text="A flag indicating that the software called this probe an outlier.">
396    </Description>
397  </Descriptions_assnlist>
398  <Channel_assnref>
399    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
400  </Channel_assnref>
401  <Scale_assn>
402    <OntologyEntry category="Scale" value="linear_scale">
403    </OntologyEntry>
404  </Scale_assn>
405  <DataType_assn>
406    <OntologyEntry category="DataType" value="boolean">
407    </OntologyEntry>
408  </DataType_assn>
409      </SpecializedQuantitationType>
410      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CELPixels" isBackground="0">
411  <Descriptions_assnlist>
412    <Description text="The number of pixels used to calculate the intensity.">
413    </Description>
414  </Descriptions_assnlist>
415  <Channel_assnref>
416    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
417  </Channel_assnref>
418  <Scale_assn>
419    <OntologyEntry category="Scale" value="linear_scale">
420    </OntologyEntry>
421  </Scale_assn>
422  <DataType_assn>
423    <OntologyEntry category="DataType" value="integer">
424    </OntologyEntry>
425  </DataType_assn>
426      </SpecializedQuantitationType>
427      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CELX" isBackground="0">
428  <Descriptions_assnlist>
429    <Description text="The x coordinate of the probe.">
430    </Description>
431  </Descriptions_assnlist>
432  <Channel_assnref>
433    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
434  </Channel_assnref>
435  <Scale_assn>
436    <OntologyEntry category="Scale" value="linear_scale">
437    </OntologyEntry>
438  </Scale_assn>
439  <DataType_assn>
440    <OntologyEntry category="DataType" value="integer">
441    </OntologyEntry>
442  </DataType_assn>
443      </SpecializedQuantitationType>
444      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CELY" isBackground="0">
445  <Descriptions_assnlist>
446    <Description text="The y coordinate of the probe.">
447    </Description>
448  </Descriptions_assnlist>
449  <Channel_assnref>
450    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
451  </Channel_assnref>
452  <Scale_assn>
453    <OntologyEntry category="Scale" value="linear_scale">
454    </OntologyEntry>
455  </Scale_assn>
456  <DataType_assn>
457    <OntologyEntry category="DataType" value="integer">
458    </OntologyEntry>
459  </DataType_assn>
460      </SpecializedQuantitationType>
461      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CHPAvgDiffChange" isBackground="0">
462  <Descriptions_assnlist>
463    <Description text="The change in average difference">
464    </Description>
465  </Descriptions_assnlist>
466  <Channel_assnref>
467    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
468  </Channel_assnref>
469  <Scale_assn>
470    <OntologyEntry category="Scale" value="linear_scale">
471    </OntologyEntry>
472  </Scale_assn>
473  <DataType_assn>
474    <OntologyEntry category="DataType" value="float">
475    </OntologyEntry>
476  </DataType_assn>
477      </SpecializedQuantitationType>
478      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CHPBaselineAbsent" isBackground="0">
479  <Descriptions_assnlist>
480    <Description text="Flag indicating if the baseline call was absent.">
481    </Description>
482  </Descriptions_assnlist>
483  <Channel_assnref>
484    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
485  </Channel_assnref>
486  <Scale_assn>
487    <OntologyEntry category="Scale" value="linear_scale">
488    </OntologyEntry>
489  </Scale_assn>
490  <DataType_assn>
491    <OntologyEntry category="DataType" value="float">
492    </OntologyEntry>
493  </DataType_assn>
494      </SpecializedQuantitationType>
495      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CHPCommonPairs" isBackground="0">
496  <Descriptions_assnlist>
497    <Description text="The number of common probe pairs on two arrays (experiment versus baseline) after saturation across the probe set is determined.">
498    </Description>
499  </Descriptions_assnlist>
500  <Channel_assnref>
501    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
502  </Channel_assnref>
503  <Scale_assn>
504    <OntologyEntry category="Scale" value="linear_scale">
505    </OntologyEntry>
506  </Scale_assn>
507  <DataType_assn>
508    <OntologyEntry category="DataType" value="integer">
509    </OntologyEntry>
510  </DataType_assn>
511      </SpecializedQuantitationType>
512      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CHPDec" isBackground="0">
513  <Descriptions_assnlist>
514    <Description text="The number of decreasing pairs.">
515    </Description>
516  </Descriptions_assnlist>
517  <Channel_assnref>
518    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
519  </Channel_assnref>
520  <Scale_assn>
521    <OntologyEntry category="Scale" value="linear_scale">
522    </OntologyEntry>
523  </Scale_assn>
524  <DataType_assn>
525    <OntologyEntry category="DataType" value="integer">
526    </OntologyEntry>
527  </DataType_assn>
528      </SpecializedQuantitationType>
529      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CHPInc" isBackground="0">
530  <Descriptions_assnlist>
531    <Description text="The number of increasing pairs.">
532    </Description>
533  </Descriptions_assnlist>
534  <Channel_assnref>
535    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
536  </Channel_assnref>
537  <Scale_assn>
538    <OntologyEntry category="Scale" value="linear_scale">
539    </OntologyEntry>
540  </Scale_assn>
541  <DataType_assn>
542    <OntologyEntry category="DataType" value="integer">
543    </OntologyEntry>
544  </DataType_assn>
545      </SpecializedQuantitationType>
546      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CHPLogAvgRatioChange" isBackground="0">
547  <Descriptions_assnlist>
548    <Description text="The change in log average ratio.">
549    </Description>
550  </Descriptions_assnlist>
551  <Channel_assnref>
552    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
553  </Channel_assnref>
554  <Scale_assn>
555    <OntologyEntry category="Scale" value="log_base_10">
556    </OntologyEntry>
557  </Scale_assn>
558  <DataType_assn>
559    <OntologyEntry category="DataType" value="float">
560    </OntologyEntry>
561  </DataType_assn>
562      </SpecializedQuantitationType>
563      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CHPNegative" isBackground="0">
564  <Descriptions_assnlist>
565    <Description text="Number of negative probe pairs.">
566    </Description>
567  </Descriptions_assnlist>
568  <Channel_assnref>
569    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
570  </Channel_assnref>
571  <Scale_assn>
572    <OntologyEntry category="Scale" value="linear_scale">
573    </OntologyEntry>
574  </Scale_assn>
575  <DataType_assn>
576    <OntologyEntry category="DataType" value="integer">
577    </OntologyEntry>
578  </DataType_assn>
579      </SpecializedQuantitationType>
580      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CHPNegChange" isBackground="0">
581  <Descriptions_assnlist>
582    <Description text="The change in negative pairs.">
583    </Description>
584  </Descriptions_assnlist>
585  <Channel_assnref>
586    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
587  </Channel_assnref>
588  <Scale_assn>
589    <OntologyEntry category="Scale" value="linear_scale">
590    </OntologyEntry>
591  </Scale_assn>
592  <DataType_assn>
593    <OntologyEntry category="DataType" value="integer">
594    </OntologyEntry>
595  </DataType_assn>
596      </SpecializedQuantitationType>
597      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CHPPairs" isBackground="0">
598  <Descriptions_assnlist>
599    <Description text="The number of probe pairs in a probe set.">
600    </Description>
601  </Descriptions_assnlist>
602  <Channel_assnref>
603    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
604  </Channel_assnref>
605  <Scale_assn>
606    <OntologyEntry category="Scale" value="linear_scale">
607    </OntologyEntry>
608  </Scale_assn>
609  <DataType_assn>
610    <OntologyEntry category="DataType" value="integer">
611    </OntologyEntry>
612  </DataType_assn>
613      </SpecializedQuantitationType>
614      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CHPPairsInAvg" isBackground="0">
615  <Descriptions_assnlist>
616    <Description text="Number of probe pairs used in computing the average intensity difference">
617    </Description>
618  </Descriptions_assnlist>
619  <Channel_assnref>
620    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
621  </Channel_assnref>
622  <Scale_assn>
623    <OntologyEntry category="Scale" value="linear_scale">
624    </OntologyEntry>
625  </Scale_assn>
626  <DataType_assn>
627    <OntologyEntry category="DataType" value="integer">
628    </OntologyEntry>
629  </DataType_assn>
630      </SpecializedQuantitationType>
631      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CHPPairsUsed" isBackground="0">
632  <Descriptions_assnlist>
633    <Description text="The number of probe pairs in the probe set used in the Detection call.">
634    </Description>
635  </Descriptions_assnlist>
636  <Channel_assnref>
637    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
638  </Channel_assnref>
639  <Scale_assn>
640    <OntologyEntry category="Scale" value="linear_scale">
641    </OntologyEntry>
642  </Scale_assn>
643  <DataType_assn>
644    <OntologyEntry category="DataType" value="integer">
645    </OntologyEntry>
646  </DataType_assn>
647      </SpecializedQuantitationType>
648      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CHPPosChange" isBackground="0">
649  <Descriptions_assnlist>
650    <Description text="The change in positive pairs.">
651    </Description>
652  </Descriptions_assnlist>
653  <Channel_assnref>
654    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
655  </Channel_assnref>
656  <Scale_assn>
657    <OntologyEntry category="Scale" value="linear_scale">
658    </OntologyEntry>
659  </Scale_assn>
660  <DataType_assn>
661    <OntologyEntry category="DataType" value="float">
662    </OntologyEntry>
663  </DataType_assn>
664      </SpecializedQuantitationType>
665      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CHPPositive" isBackground="0">
666  <Descriptions_assnlist>
667    <Description text="Number of positive probe pairs.">
668    </Description>
669  </Descriptions_assnlist>
670  <Channel_assnref>
671    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
672  </Channel_assnref>
673  <Scale_assn>
674    <OntologyEntry category="Scale" value="linear_scale">
675    </OntologyEntry>
676  </Scale_assn>
677  <DataType_assn>
678    <OntologyEntry category="DataType" value="integer">
679    </OntologyEntry>
680  </DataType_assn>
681      </SpecializedQuantitationType>
682      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:CHPSortScore" isBackground="0">
683  <Descriptions_assnlist>
684    <Description text="The sort score.">
685    </Description>
686  </Descriptions_assnlist>
687  <Channel_assnref>
688    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
689  </Channel_assnref>
690  <Scale_assn>
691    <OntologyEntry category="Scale" value="linear_scale">
692    </OntologyEntry>
693  </Scale_assn>
694  <DataType_assn>
695    <OntologyEntry category="DataType" value="float">
696    </OntologyEntry>
697  </DataType_assn>
698      </SpecializedQuantitationType>
699      <SpecializedQuantitationType identifier="Affymetrix:QuantitationType:ProbeSetName" isBackground="0">
700  <Descriptions_assnlist>
701    <Description text="The name of the probe set.">
702    </Description>
703  </Descriptions_assnlist>
704  <Channel_assnref>
705    <Channel_ref identifier="ebi.ac.uk:Channel:biotin"/>
706  </Channel_assnref>
707  <Scale_assn>
708    <OntologyEntry category="Scale" value="unscaled">
709    </OntologyEntry>
710  </Scale_assn>
711  <DataType_assn>
712    <OntologyEntry category="DataType" value="string_datatype">
713    </OntologyEntry>
714  </DataType_assn>
715      </SpecializedQuantitationType>
716    </QuantitationType_assnlist>
717</QuantitationType_package>
718</MAGE-ML>
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