source: trunk/misc/mage/rawdatatypes/QT_BZScan.xml @ 2925

<?xml version="1.0" encoding="ISO-8859-1" standalone="no"?>
<?xml-stylesheet type="text/xsl" href="QT.xsl"?>
<!DOCTYPE MAGE-ML PUBLIC "-//OMG//DTD MAGE-ML 1.0//EN" "http://schema.omg.org/lsr/gene_expression/1.0/MAGE-ML.dtd">
<MAGE-ML identifier="EBI:eleh:BZScan QT XML">
  <QuantitationType_package>
    <QuantitationType_assnlist>
      <MeasuredSignal identifier="TAGC ERM206:BZScan_QuantitationType:Q(image,const)" name="Q(image,const)" isBackground="0">
  <Descriptions_assnlist>
    <Description text="Spot intensity based on user-provided diameter and measured data." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
    </Description>
  </Descriptions_assnlist>
  <Scale_assn>
    <OntologyEntry category="Scale" value="linear_scale">
    </OntologyEntry>
  </Scale_assn>
  <DataType_assn>
    <OntologyEntry category="DataType" value="float">
    </OntologyEntry>
  </DataType_assn>
      </MeasuredSignal>
      <SpecializedQuantitationType identifier="TAGC ERM206:BZScan_QuantitationType:Q(image,var)" name="Q(image,var)" isBackground="0">
  <Descriptions_assnlist>
    <Description text="Spot intensity based on computed diameter and measured data." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
    </Description>
  </Descriptions_assnlist>
  <Scale_assn>
    <OntologyEntry category="Scale" value="linear_scale">
    </OntologyEntry>
  </Scale_assn>
  <DataType_assn>
    <OntologyEntry category="DataType" value="float">
    </OntologyEntry>
  </DataType_assn>
      </SpecializedQuantitationType>
      <SpecializedQuantitationType identifier="TAGC ERM206:BZScan_QuantitationType:Q(fit,const)" name="Q(fit,const)" isBackground="0">
  <Descriptions_assnlist>
    <Description text="Spot intensity based on user-provided diameter and theoretical fit to the data." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
    </Description>
  </Descriptions_assnlist>
  <Scale_assn>
    <OntologyEntry category="Scale" value="linear_scale">
    </OntologyEntry>
  </Scale_assn>
  <DataType_assn>
    <OntologyEntry category="DataType" value="float">
    </OntologyEntry>
  </DataType_assn>
      </SpecializedQuantitationType>
      <SpecializedQuantitationType identifier="TAGC ERM206:BZScan_QuantitationType:Q(fit,var)" name="Q(fit,var)" isBackground="0">
  <Descriptions_assnlist>
    <Description text="Spot intensity based on computed diameter and and theoretical fit to the data." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
    </Description>
  </Descriptions_assnlist>
  <Scale_assn>
    <OntologyEntry category="Scale" value="linear_scale">
    </OntologyEntry>
  </Scale_assn>
  <DataType_assn>
    <OntologyEntry category="DataType" value="float">
    </OntologyEntry>
  </DataType_assn>
      </SpecializedQuantitationType>
      <SpecializedQuantitationType identifier="TAGC ERM206:BZScan_QuantitationType:Fit_correction" name="Fit_correction" isBackground="0">
  <Descriptions_assnlist>
    <Description text="Background level by unit surface." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
    </Description>
  </Descriptions_assnlist>
  <Scale_assn>
    <OntologyEntry category="Scale" value="linear_scale">
    </OntologyEntry>
  </Scale_assn>
  <DataType_assn>
    <OntologyEntry category="DataType" value="float">
    </OntologyEntry>
  </DataType_assn>
      </SpecializedQuantitationType>
      <SpecializedQuantitationType identifier="TAGC ERM206:BZScan_QuantitationType:Diameter" name="Diameter" isBackground="0">
  <Descriptions_assnlist>
    <Description text="Automatically computed spot diameter." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
    </Description>
  </Descriptions_assnlist>
  <Scale_assn>
    <OntologyEntry category="Scale" value="linear_scale">
    </OntologyEntry>
  </Scale_assn>
  <DataType_assn>
    <OntologyEntry category="DataType" value="float">
    </OntologyEntry>
  </DataType_assn>
      </SpecializedQuantitationType>
      <PValue identifier="TAGC ERM206:BZScan_QuantitationType:QM" name="QM" isBackground="0">
  <Descriptions_assnlist>
    <Description text="Quality metric: distance between measured data and theoretical fit." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
    </Description>
  </Descriptions_assnlist>
  <Scale_assn>
    <OntologyEntry category="Scale" value="linear_scale">
    </OntologyEntry>
  </Scale_assn>
  <DataType_assn>
    <OntologyEntry category="DataType" value="float">
    </OntologyEntry>
  </DataType_assn>
  <TargetQuantitationType_assnref>
    <MeasuredSignal_ref identifier="TAGC ERM206:BZScan_QuantitationType:Q(image,const)"/>
  </TargetQuantitationType_assnref>
      </PValue>
      <PresentAbsent identifier="TAGC ERM206:BZScan_QuantitationType:SpotQuality" name="SpotQuality" isBackground="0">
  <Descriptions_assnlist>
    <Description text="Present/Absent (automatic guess)." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
    </Description>
  </Descriptions_assnlist>
  <Scale_assn>
    <OntologyEntry category="Scale" value="unscaled">
    </OntologyEntry>
  </Scale_assn>
  <DataType_assn>
    <OntologyEntry category="DataType" value="boolean">
    </OntologyEntry>
  </DataType_assn>
      </PresentAbsent>
      <SpecializedQuantitationType identifier="TAGC ERM206:BZScan_QuantitationType:Overshining_correction" name="Overshining_correction" isBackground="0">
  <Descriptions_assnlist>
    <Description text="Correction for overshining by unit radius." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
    </Description>
  </Descriptions_assnlist>
  <Scale_assn>
    <OntologyEntry category="Scale" value="linear_scale">
    </OntologyEntry>
  </Scale_assn>
  <DataType_assn>
    <OntologyEntry category="DataType" value="float">
    </OntologyEntry>
  </DataType_assn>
      </SpecializedQuantitationType>
    </QuantitationType_assnlist>
  </QuantitationType_package>
</MAGE-ML>