source: trunk/misc/mage/rawdatatypes/QT_BZScan.xml @ 2925

Last change on this file since 2925 was 2925, checked in by Jari Häkkinen, 16 years ago

Added svndigest:ignore property tom some items.

  • Property svn:eol-style set to native
  • Property svn:keywords set to Id
  • Property svndigest:ignore set to *
File size: 5.7 KB
Line 
1<?xml version="1.0" encoding="ISO-8859-1" standalone="no"?>
2<?xml-stylesheet type="text/xsl" href="QT.xsl"?>
3<!DOCTYPE MAGE-ML PUBLIC "-//OMG//DTD MAGE-ML 1.0//EN" "http://schema.omg.org/lsr/gene_expression/1.0/MAGE-ML.dtd">
4<MAGE-ML identifier="EBI:eleh:BZScan QT XML">
5  <QuantitationType_package>
6    <QuantitationType_assnlist>
7      <MeasuredSignal identifier="TAGC ERM206:BZScan_QuantitationType:Q(image,const)" name="Q(image,const)" isBackground="0">
8  <Descriptions_assnlist>
9    <Description text="Spot intensity based on user-provided diameter and measured data." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
10    </Description>
11  </Descriptions_assnlist>
12  <Scale_assn>
13    <OntologyEntry category="Scale" value="linear_scale">
14    </OntologyEntry>
15  </Scale_assn>
16  <DataType_assn>
17    <OntologyEntry category="DataType" value="float">
18    </OntologyEntry>
19  </DataType_assn>
20      </MeasuredSignal>
21      <SpecializedQuantitationType identifier="TAGC ERM206:BZScan_QuantitationType:Q(image,var)" name="Q(image,var)" isBackground="0">
22  <Descriptions_assnlist>
23    <Description text="Spot intensity based on computed diameter and measured data." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
24    </Description>
25  </Descriptions_assnlist>
26  <Scale_assn>
27    <OntologyEntry category="Scale" value="linear_scale">
28    </OntologyEntry>
29  </Scale_assn>
30  <DataType_assn>
31    <OntologyEntry category="DataType" value="float">
32    </OntologyEntry>
33  </DataType_assn>
34      </SpecializedQuantitationType>
35      <SpecializedQuantitationType identifier="TAGC ERM206:BZScan_QuantitationType:Q(fit,const)" name="Q(fit,const)" isBackground="0">
36  <Descriptions_assnlist>
37    <Description text="Spot intensity based on user-provided diameter and theoretical fit to the data." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
38    </Description>
39  </Descriptions_assnlist>
40  <Scale_assn>
41    <OntologyEntry category="Scale" value="linear_scale">
42    </OntologyEntry>
43  </Scale_assn>
44  <DataType_assn>
45    <OntologyEntry category="DataType" value="float">
46    </OntologyEntry>
47  </DataType_assn>
48      </SpecializedQuantitationType>
49      <SpecializedQuantitationType identifier="TAGC ERM206:BZScan_QuantitationType:Q(fit,var)" name="Q(fit,var)" isBackground="0">
50  <Descriptions_assnlist>
51    <Description text="Spot intensity based on computed diameter and and theoretical fit to the data." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
52    </Description>
53  </Descriptions_assnlist>
54  <Scale_assn>
55    <OntologyEntry category="Scale" value="linear_scale">
56    </OntologyEntry>
57  </Scale_assn>
58  <DataType_assn>
59    <OntologyEntry category="DataType" value="float">
60    </OntologyEntry>
61  </DataType_assn>
62      </SpecializedQuantitationType>
63      <SpecializedQuantitationType identifier="TAGC ERM206:BZScan_QuantitationType:Fit_correction" name="Fit_correction" isBackground="0">
64  <Descriptions_assnlist>
65    <Description text="Background level by unit surface." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
66    </Description>
67  </Descriptions_assnlist>
68  <Scale_assn>
69    <OntologyEntry category="Scale" value="linear_scale">
70    </OntologyEntry>
71  </Scale_assn>
72  <DataType_assn>
73    <OntologyEntry category="DataType" value="float">
74    </OntologyEntry>
75  </DataType_assn>
76      </SpecializedQuantitationType>
77      <SpecializedQuantitationType identifier="TAGC ERM206:BZScan_QuantitationType:Diameter" name="Diameter" isBackground="0">
78  <Descriptions_assnlist>
79    <Description text="Automatically computed spot diameter." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
80    </Description>
81  </Descriptions_assnlist>
82  <Scale_assn>
83    <OntologyEntry category="Scale" value="linear_scale">
84    </OntologyEntry>
85  </Scale_assn>
86  <DataType_assn>
87    <OntologyEntry category="DataType" value="float">
88    </OntologyEntry>
89  </DataType_assn>
90      </SpecializedQuantitationType>
91      <PValue identifier="TAGC ERM206:BZScan_QuantitationType:QM" name="QM" isBackground="0">
92  <Descriptions_assnlist>
93    <Description text="Quality metric: distance between measured data and theoretical fit." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
94    </Description>
95  </Descriptions_assnlist>
96  <Scale_assn>
97    <OntologyEntry category="Scale" value="linear_scale">
98    </OntologyEntry>
99  </Scale_assn>
100  <DataType_assn>
101    <OntologyEntry category="DataType" value="float">
102    </OntologyEntry>
103  </DataType_assn>
104  <TargetQuantitationType_assnref>
105    <MeasuredSignal_ref identifier="TAGC ERM206:BZScan_QuantitationType:Q(image,const)"/>
106  </TargetQuantitationType_assnref>
107      </PValue>
108      <PresentAbsent identifier="TAGC ERM206:BZScan_QuantitationType:SpotQuality" name="SpotQuality" isBackground="0">
109  <Descriptions_assnlist>
110    <Description text="Present/Absent (automatic guess)." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
111    </Description>
112  </Descriptions_assnlist>
113  <Scale_assn>
114    <OntologyEntry category="Scale" value="unscaled">
115    </OntologyEntry>
116  </Scale_assn>
117  <DataType_assn>
118    <OntologyEntry category="DataType" value="boolean">
119    </OntologyEntry>
120  </DataType_assn>
121      </PresentAbsent>
122      <SpecializedQuantitationType identifier="TAGC ERM206:BZScan_QuantitationType:Overshining_correction" name="Overshining_correction" isBackground="0">
123  <Descriptions_assnlist>
124    <Description text="Correction for overshining by unit radius." URI="http://tagc.univ-mrs.fr/bioinformatics/bzscan.html">
125    </Description>
126  </Descriptions_assnlist>
127  <Scale_assn>
128    <OntologyEntry category="Scale" value="linear_scale">
129    </OntologyEntry>
130  </Scale_assn>
131  <DataType_assn>
132    <OntologyEntry category="DataType" value="float">
133    </OntologyEntry>
134  </DataType_assn>
135      </SpecializedQuantitationType>
136    </QuantitationType_assnlist>
137  </QuantitationType_package>
138</MAGE-ML>
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