source: trunk/misc/mage/rawdatatypes/QT_GeneTAC.xml @ 1938

Last change on this file since 1938 was 1938, checked in by Nicklas Nordborg, 17 years ago

Added QuantArray? raw data types
Added some intensity formulas to other raw data types
Added MAGE files describing raw data types
  • Property svn:eol-style set to native
  • Property svn:keywords set to Date Id
File size: 7.3 KB
Line 
1<?xml version="1.0" encoding="ISO-8859-1" standalone="no"?>
2<?xml-stylesheet type="text/xsl" href="QT.xsl"?>
3<!DOCTYPE MAGE-ML PUBLIC "-//OMG//DTD MAGE-ML 1.0//EN" "http://schema.omg.org/lsr/gene_expression/1.0/MAGE-ML.dtd">
4<MAGE-ML identifier="EBI:eleh:GeneTAC LSIV QT XML">
5  <QuantitationType_package>
6    <QuantitationType_assnlist>
7      <MeasuredSignal isBackground="0" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Signal med Cy3" name="Signal med Cy3">
8  <Descriptions_assnlist>
9    <Description text="Median of Cy3 signal intensity.">
10    </Description>
11  </Descriptions_assnlist>
12  <Channel_assnref>
13    <Channel_ref identifier="ebi.ac.uk:Channel:Cy3"/>
14  </Channel_assnref>
15        <Scale_assn>
16          <OntologyEntry category="Scale" value="linear_scale">
17          </OntologyEntry>
18        </Scale_assn>
19        <DataType_assn>
20          <OntologyEntry category="DataType" value="float">
21          </OntologyEntry>
22        </DataType_assn>
23      </MeasuredSignal>
24      <MeasuredSignal isBackground="0" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Signal med Cy5" name="Signal med Cy5">
25  <Descriptions_assnlist>
26    <Description text="Median of Cy5 signal intensity.">
27    </Description>
28  </Descriptions_assnlist>
29  <Channel_assnref>
30    <Channel_ref identifier="ebi.ac.uk:Channel:Cy5"/>
31  </Channel_assnref>
32        <Scale_assn>
33          <OntologyEntry category="Scale" value="linear_scale">
34          </OntologyEntry>
35        </Scale_assn>
36        <DataType_assn>
37          <OntologyEntry category="DataType" value="float">
38          </OntologyEntry>
39        </DataType_assn>
40      </MeasuredSignal>
41      <Error isBackground="0" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Signal st dev Cy3" name="Signal st dev Cy3">
42  <Descriptions_assnlist>
43    <Description text="Standard deviation of Cy3 signal intensity.">
44    </Description>
45  </Descriptions_assnlist>
46  <Channel_assnref>
47    <Channel_ref identifier="ebi.ac.uk:Channel:Cy3"/>
48  </Channel_assnref>
49        <Scale_assn>
50          <OntologyEntry category="Scale" value="linear_scale">
51          </OntologyEntry>
52        </Scale_assn>
53        <DataType_assn>
54          <OntologyEntry category="DataType" value="float">
55          </OntologyEntry>
56        </DataType_assn>
57  <TargetQuantitationType_assnref>
58    <MeasuredSignal_ref identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Signal med Cy3"/>
59  </TargetQuantitationType_assnref>
60      </Error>
61      <Error isBackground="0" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Signal st dev Cy5" name="Signal st dev Cy5">
62  <Descriptions_assnlist>
63    <Description text="Standard deviation of Cy5 signal intensity.">
64    </Description>
65  </Descriptions_assnlist>
66  <Channel_assnref>
67    <Channel_ref identifier="ebi.ac.uk:Channel:Cy5"/>
68  </Channel_assnref>
69        <Scale_assn>
70          <OntologyEntry category="Scale" value="linear_scale">
71          </OntologyEntry>
72        </Scale_assn>
73        <DataType_assn>
74          <OntologyEntry category="DataType" value="float">
75          </OntologyEntry>
76        </DataType_assn>
77  <TargetQuantitationType_assnref>
78    <MeasuredSignal_ref identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Signal med Cy5"/>
79  </TargetQuantitationType_assnref>
80      </Error>
81      <Ratio isBackground="0" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Signal med ratio" name="Signal med ratio">
82  <Descriptions_assnlist>
83    <Description text="Ratio of median signal.">
84    </Description>
85  </Descriptions_assnlist>
86        <Scale_assn>
87          <OntologyEntry category="Scale" value="linear_scale">
88          </OntologyEntry>
89        </Scale_assn>
90        <DataType_assn>
91          <OntologyEntry category="DataType" value="float">
92          </OntologyEntry>
93        </DataType_assn>
94      </Ratio>
95      <MeasuredSignal isBackground="1" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Background med Cy3" name="Background med Cy3">
96  <Descriptions_assnlist>
97    <Description text="Median of background intensity for Cy3.">
98    </Description>
99  </Descriptions_assnlist>
100  <Channel_assnref>
101    <Channel_ref identifier="ebi.ac.uk:Channel:Cy3"/>
102  </Channel_assnref>
103        <Scale_assn>
104          <OntologyEntry category="Scale" value="linear_scale">
105          </OntologyEntry>
106        </Scale_assn>
107        <DataType_assn>
108          <OntologyEntry category="DataType" value="float">
109          </OntologyEntry>
110        </DataType_assn>
111      </MeasuredSignal>
112      <MeasuredSignal isBackground="1" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Background med Cy5" name="Background med Cy5">
113  <Descriptions_assnlist>
114    <Description text="Median of background intensity for Cy5.">
115    </Description>
116  </Descriptions_assnlist>
117  <Channel_assnref>
118    <Channel_ref identifier="ebi.ac.uk:Channel:Cy5"/>
119  </Channel_assnref>
120        <Scale_assn>
121          <OntologyEntry category="Scale" value="linear_scale">
122          </OntologyEntry>
123        </Scale_assn>
124        <DataType_assn>
125          <OntologyEntry category="DataType" value="float">
126          </OntologyEntry>
127        </DataType_assn>
128      </MeasuredSignal>
129      <Error isBackground="1" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Background st dev Cy3" name="Background st dev Cy3">
130  <Descriptions_assnlist>
131    <Description text="Standard deviation of background intensity for Cy3.">
132    </Description>
133  </Descriptions_assnlist>
134  <Channel_assnref>
135    <Channel_ref identifier="ebi.ac.uk:Channel:Cy3"/>
136  </Channel_assnref>
137        <Scale_assn>
138          <OntologyEntry category="Scale" value="linear_scale">
139          </OntologyEntry>
140        </Scale_assn>
141        <DataType_assn>
142          <OntologyEntry category="DataType" value="float">
143          </OntologyEntry>
144        </DataType_assn>
145  <TargetQuantitationType_assnref>
146    <MeasuredSignal_ref identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Background med Cy3"/>
147  </TargetQuantitationType_assnref>
148      </Error>
149      <Error isBackground="1" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Background st dev Cy5" name="Background st dev Cy5">
150  <Descriptions_assnlist>
151    <Description text="Standard deviation of background intensity for Cy5.">
152    </Description>
153  </Descriptions_assnlist>
154  <Channel_assnref>
155    <Channel_ref identifier="ebi.ac.uk:Channel:Cy5"/>
156  </Channel_assnref>
157        <Scale_assn>
158          <OntologyEntry category="Scale" value="linear_scale">
159          </OntologyEntry>
160        </Scale_assn>
161        <DataType_assn>
162          <OntologyEntry category="DataType" value="float">
163          </OntologyEntry>
164        </DataType_assn>
165  <TargetQuantitationType_assnref>
166    <MeasuredSignal_ref identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Background med Cy5"/>
167  </TargetQuantitationType_assnref>
168      </Error>
169      <Ratio isBackground="1" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Background med ratio" name="Background med ratio">
170  <Descriptions_assnlist>
171    <Description text="Ratio of median background.">
172    </Description>
173  </Descriptions_assnlist>
174        <Scale_assn>
175          <OntologyEntry category="Scale" value="linear_scale">
176          </OntologyEntry>
177        </Scale_assn>
178        <DataType_assn>
179          <OntologyEntry category="DataType" value="float">
180          </OntologyEntry>
181        </DataType_assn>
182      </Ratio>
183    </QuantitationType_assnlist>
184  </QuantitationType_package>
185</MAGE-ML>
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