source: trunk/misc/mage/rawdatatypes/QT_GeneTAC.xml @ 2925

Last change on this file since 2925 was 2925, checked in by Jari Häkkinen, 17 years ago

Added svndigest:ignore property tom some items.
  • Property svn:eol-style set to native
  • Property svn:keywords set to Id
  • Property svndigest:ignore set to *
File size: 7.3 KB
Line 
1<?xml version="1.0" encoding="ISO-8859-1" standalone="no"?>
2<?xml-stylesheet type="text/xsl" href="QT.xsl"?>
3<!DOCTYPE MAGE-ML PUBLIC "-//OMG//DTD MAGE-ML 1.0//EN" "http://schema.omg.org/lsr/gene_expression/1.0/MAGE-ML.dtd">
4<MAGE-ML identifier="EBI:eleh:GeneTAC LSIV QT XML">
5  <QuantitationType_package>
6    <QuantitationType_assnlist>
7      <MeasuredSignal isBackground="0" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Signal med Cy3" name="Signal med Cy3">
8  <Descriptions_assnlist>
9    <Description text="Median of Cy3 signal intensity.">
10    </Description>
11  </Descriptions_assnlist>
12  <Channel_assnref>
13    <Channel_ref identifier="ebi.ac.uk:Channel:Cy3"/>
14  </Channel_assnref>
15        <Scale_assn>
16          <OntologyEntry category="Scale" value="linear_scale">
17          </OntologyEntry>
18        </Scale_assn>
19        <DataType_assn>
20          <OntologyEntry category="DataType" value="float">
21          </OntologyEntry>
22        </DataType_assn>
23      </MeasuredSignal>
24      <MeasuredSignal isBackground="0" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Signal med Cy5" name="Signal med Cy5">
25  <Descriptions_assnlist>
26    <Description text="Median of Cy5 signal intensity.">
27    </Description>
28  </Descriptions_assnlist>
29  <Channel_assnref>
30    <Channel_ref identifier="ebi.ac.uk:Channel:Cy5"/>
31  </Channel_assnref>
32        <Scale_assn>
33          <OntologyEntry category="Scale" value="linear_scale">
34          </OntologyEntry>
35        </Scale_assn>
36        <DataType_assn>
37          <OntologyEntry category="DataType" value="float">
38          </OntologyEntry>
39        </DataType_assn>
40      </MeasuredSignal>
41      <Error isBackground="0" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Signal st dev Cy3" name="Signal st dev Cy3">
42  <Descriptions_assnlist>
43    <Description text="Standard deviation of Cy3 signal intensity.">
44    </Description>
45  </Descriptions_assnlist>
46  <Channel_assnref>
47    <Channel_ref identifier="ebi.ac.uk:Channel:Cy3"/>
48  </Channel_assnref>
49        <Scale_assn>
50          <OntologyEntry category="Scale" value="linear_scale">
51          </OntologyEntry>
52        </Scale_assn>
53        <DataType_assn>
54          <OntologyEntry category="DataType" value="float">
55          </OntologyEntry>
56        </DataType_assn>
57  <TargetQuantitationType_assnref>
58    <MeasuredSignal_ref identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Signal med Cy3"/>
59  </TargetQuantitationType_assnref>
60      </Error>
61      <Error isBackground="0" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Signal st dev Cy5" name="Signal st dev Cy5">
62  <Descriptions_assnlist>
63    <Description text="Standard deviation of Cy5 signal intensity.">
64    </Description>
65  </Descriptions_assnlist>
66  <Channel_assnref>
67    <Channel_ref identifier="ebi.ac.uk:Channel:Cy5"/>
68  </Channel_assnref>
69        <Scale_assn>
70          <OntologyEntry category="Scale" value="linear_scale">
71          </OntologyEntry>
72        </Scale_assn>
73        <DataType_assn>
74          <OntologyEntry category="DataType" value="float">
75          </OntologyEntry>
76        </DataType_assn>
77  <TargetQuantitationType_assnref>
78    <MeasuredSignal_ref identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Signal med Cy5"/>
79  </TargetQuantitationType_assnref>
80      </Error>
81      <Ratio isBackground="0" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Signal med ratio" name="Signal med ratio">
82  <Descriptions_assnlist>
83    <Description text="Ratio of median signal.">
84    </Description>
85  </Descriptions_assnlist>
86        <Scale_assn>
87          <OntologyEntry category="Scale" value="linear_scale">
88          </OntologyEntry>
89        </Scale_assn>
90        <DataType_assn>
91          <OntologyEntry category="DataType" value="float">
92          </OntologyEntry>
93        </DataType_assn>
94      </Ratio>
95      <MeasuredSignal isBackground="1" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Background med Cy3" name="Background med Cy3">
96  <Descriptions_assnlist>
97    <Description text="Median of background intensity for Cy3.">
98    </Description>
99  </Descriptions_assnlist>
100  <Channel_assnref>
101    <Channel_ref identifier="ebi.ac.uk:Channel:Cy3"/>
102  </Channel_assnref>
103        <Scale_assn>
104          <OntologyEntry category="Scale" value="linear_scale">
105          </OntologyEntry>
106        </Scale_assn>
107        <DataType_assn>
108          <OntologyEntry category="DataType" value="float">
109          </OntologyEntry>
110        </DataType_assn>
111      </MeasuredSignal>
112      <MeasuredSignal isBackground="1" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Background med Cy5" name="Background med Cy5">
113  <Descriptions_assnlist>
114    <Description text="Median of background intensity for Cy5.">
115    </Description>
116  </Descriptions_assnlist>
117  <Channel_assnref>
118    <Channel_ref identifier="ebi.ac.uk:Channel:Cy5"/>
119  </Channel_assnref>
120        <Scale_assn>
121          <OntologyEntry category="Scale" value="linear_scale">
122          </OntologyEntry>
123        </Scale_assn>
124        <DataType_assn>
125          <OntologyEntry category="DataType" value="float">
126          </OntologyEntry>
127        </DataType_assn>
128      </MeasuredSignal>
129      <Error isBackground="1" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Background st dev Cy3" name="Background st dev Cy3">
130  <Descriptions_assnlist>
131    <Description text="Standard deviation of background intensity for Cy3.">
132    </Description>
133  </Descriptions_assnlist>
134  <Channel_assnref>
135    <Channel_ref identifier="ebi.ac.uk:Channel:Cy3"/>
136  </Channel_assnref>
137        <Scale_assn>
138          <OntologyEntry category="Scale" value="linear_scale">
139          </OntologyEntry>
140        </Scale_assn>
141        <DataType_assn>
142          <OntologyEntry category="DataType" value="float">
143          </OntologyEntry>
144        </DataType_assn>
145  <TargetQuantitationType_assnref>
146    <MeasuredSignal_ref identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Background med Cy3"/>
147  </TargetQuantitationType_assnref>
148      </Error>
149      <Error isBackground="1" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Background st dev Cy5" name="Background st dev Cy5">
150  <Descriptions_assnlist>
151    <Description text="Standard deviation of background intensity for Cy5.">
152    </Description>
153  </Descriptions_assnlist>
154  <Channel_assnref>
155    <Channel_ref identifier="ebi.ac.uk:Channel:Cy5"/>
156  </Channel_assnref>
157        <Scale_assn>
158          <OntologyEntry category="Scale" value="linear_scale">
159          </OntologyEntry>
160        </Scale_assn>
161        <DataType_assn>
162          <OntologyEntry category="DataType" value="float">
163          </OntologyEntry>
164        </DataType_assn>
165  <TargetQuantitationType_assnref>
166    <MeasuredSignal_ref identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Background med Cy5"/>
167  </TargetQuantitationType_assnref>
168      </Error>
169      <Ratio isBackground="1" identifier="Genomic Solutions:GeneTAC LSIV 3.01_QuantitationType:Background med ratio" name="Background med ratio">
170  <Descriptions_assnlist>
171    <Description text="Ratio of median background.">
172    </Description>
173  </Descriptions_assnlist>
174        <Scale_assn>
175          <OntologyEntry category="Scale" value="linear_scale">
176          </OntologyEntry>
177        </Scale_assn>
178        <DataType_assn>
179          <OntologyEntry category="DataType" value="float">
180          </OntologyEntry>
181        </DataType_assn>
182      </Ratio>
183    </QuantitationType_assnlist>
184  </QuantitationType_package>
185</MAGE-ML>
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