source: trunk/src/core/net/sf/basedb/core @ 5120

Name Size Rev Age Author Last Change
../
authentication 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
data 5119   13 years Nicklas Nordborg Fixes #1401: One-to-one associations should not be synchronized in the …
dbengine 5001   14 years Nicklas Nordborg References #1324: Check TODO markers in the BASE code Seems to work.
doc-files 1538   17 years Nicklas Nordborg Implemented delete operation for BioAssaySet?, Transformation and VirtualDb?
dtd 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
filehandler 4516   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
hibernate 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
log 5068   13 years Nicklas Nordborg References #108: Logging the change history of an item Added logger …
plugin 5060   13 years Nicklas Nordborg References #108: Logging the change history of an item * Documented …
query 5014   14 years Martin Svensson Fixes #1328 Remove all or most 'continue' statements from the code. …
signal 4516   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
snapshot 5120   13 years Nicklas Nordborg References #1374: Caching of experimental factors The cache is now …
templates 5026   14 years Nicklas Nordborg References #1350: Update to Hibernate 3.3.2 * Made …
xsd 4874   14 years Nicklas Nordborg Fixes #1286: Add support of id-base attribute to extension xml files
AbsoluteProgressReporter.java 1.5 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
AbstractBatcher.java 5.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AbstractEntityQuery.java 13.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AbstractQuery.java 23.0 KB 4981   14 years Nicklas Nordborg References #1324: Check TODO markers in the BASE code Removed …
AbstractResultList.java 3.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AbstractSqlQuery.java 11.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AccessControlled.java 2.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AccountExpiredException.java 1.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Affymetrix.java 13.4 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
AlreadyLoggedInException.java 1.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Annotatable.java 2.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AnnotatableProxy.java 1.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AnnotatedItem.java 2.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Annotation.java 16.3 KB 5120   13 years Nicklas Nordborg References #1374: Caching of experimental factors The cache is now …
AnnotationBetweenRestriction.java 3.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AnnotationInRestriction.java 3.2 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AnnotationRestriction.java 9.5 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AnnotationSet.java 27.3 KB 5120   13 years Nicklas Nordborg References #1374: Caching of experimental factors The cache is now …
AnnotationSimpleRestriction.java 9.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AnnotationType.java 45.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AnnotationTypeCategory.java 4.3 KB 4696   14 years Nicklas Nordborg Fixes #1166: Store creation date for items
AnyToAny.java 20.6 KB 5021   14 years Nicklas Nordborg References #1340: Implement AnyToAny?.deleteStrayLinks() The method …
Application.java 32.8 KB 5043   13 years Nicklas Nordborg Fixes #1355: Add "client application" for internal use
ArrayBatch.java 9.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ArrayDesign.java 25.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ArrayDesignBlock.java 11.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ArrayDesignPlate.java 5.2 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ArraySlide.java 9.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BaseException.java 2.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BasicBatcher.java 18.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BasicChildItem.java 3.2 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BasicItem.java 16.5 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BatchedPropertyInfo.java 1.5 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Batcher.java 2.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BatchUtil.java 16.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BioAssay.java 13.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BioAssaySet.java 50.8 KB 4915   14 years Nicklas Nordborg References #1120: The dynamic part of BASE should keep track whether …
BioMaterial.java 3.2 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BioMaterialEvent.java 29.2 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BioMaterialList.java 23.1 KB 5014   14 years Martin Svensson Fixes #1328 Remove all or most 'continue' statements from the code. …
BioPlate.java 8.6 KB 4704   14 years Martin Svensson References #979 First commit of bioplates-support in the webbinterface.
BioSource.java 5.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BioWell.java 5.3 KB 4731   14 years Martin Svensson References #979 The implementation of bioplates/biowells in the …
BlockInfo.java 3.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BooleanParameterType.java 2.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ChangeHistory.java 13.7 KB 5048   13 years Nicklas Nordborg References #108: Logging the change history of an item * Added list …
ChildItem.java 3.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Client.java 9.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ClientDefaultSetting.java 5.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Coloring.java 5.2 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
CommonItem.java 2.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Config.java 6.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ConfigurationException.java 1.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ConnectionClosedException.java 1.2 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ContextKey.java 2.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Controlled.java 1.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DatabaseException.java 1.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DataCube.java 19.2 KB 4912   14 years Nicklas Nordborg References #1120: The dynamic part of BASE should keep track whether …
DataCubeColumn.java 5.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DataCubeExtraValue.java 7.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DataCubeFilter.java 5.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DataCubeLayer.java 5.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DataFileType.java 22.0 KB 4791   14 years Nicklas Nordborg References #1237: BioAssaySetExporter? should attach generated files to …
DataQuery.java 4.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DataResultIterator.java 3.5 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DateParameterType.java 2.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DateUtil.java 3.2 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DbControl.java 35.7 KB 5060   13 years Nicklas Nordborg References #108: Logging the change history of an item * Documented …
DetachedItemException.java 1.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Directory.java 23.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DisallowedValueException.java 1.8 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
DiskConsumable.java 2.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DiskUsage.java 6.7 KB 5011   14 years Nicklas Nordborg Fixes #1341: Implement DiskUsage?.getUsingItems()
DiskUsageStatistics.java 8.5 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
DoubleParameterType.java 4.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DynamicExtraValueQuery.java 2.2 KB 4912   14 years Nicklas Nordborg References #1120: The dynamic part of BASE should keep track whether …
DynamicJoin.java 6.2 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DynamicPositionQuery.java 5.0 KB 4928   14 years Nicklas Nordborg References #742: Refactor BioAssaySetExporter? The new BASEfile …
DynamicPositionQueryJoiners.java 4.0 KB 4928   14 years Nicklas Nordborg References #742: Refactor BioAssaySetExporter? The new BASEfile …
DynamicQuery.java 2.9 KB 4912   14 years Nicklas Nordborg References #1120: The dynamic part of BASE should keep track whether …
DynamicRawDataQuery.java 2.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DynamicReporterQuery.java 2.1 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
DynamicRestriction.java 3.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DynamicResultIterator.java 4.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DynamicSpotQuery.java 7.4 KB 4928   14 years Nicklas Nordborg References #742: Refactor BioAssaySetExporter? The new BASEfile …
DynamicSpotQueryJoiners.java 7.1 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
Experiment.java 25.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ExtendedProperties.java 9.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ExtendedProperty.java 9.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ExtendedPropertyAccessor.java 5.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ExtendedPropertyLinker.java 2.1 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
Extract.java 8.2 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ExtraValue.java 16.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ExtraValueExpression.java 2.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ExtraValueJoin.java 6.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ExtraValueType.java 10.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Feature.java 3.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
FeatureBatcher.java 10.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
FeatureCoordinate.java 3.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
FeatureIdentificationMethod.java 5.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
File.java 40.5 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
FileAttachable.java 1.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
FileParameterType.java 2.2 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
FileSet.java 19.5 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
FileSetMember.java 6.7 KB 4750   14 years Nicklas Nordborg References #1193: Generic tree-like item overview Verified that data …
FileStoreEnabled.java 2.5 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
FileStoreUtil.java 8.2 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
FileType.java 7.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
filter-def.hbm.xml 5.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
FilterBatcher.java 10.6 KB 4992   14 years Nicklas Nordborg References #1324: Check TODO markers in the BASE code We have made it …
FloatParameterType.java 4.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Formula.java 23.2 KB 4917   14 years Nicklas Nordborg References #1120: The dynamic part of BASE should keep track whether …
GlobalDefaultSetting.java 3.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Group.java 19.0 KB 5077   13 years Nicklas Nordborg Fixes #1182: Groups with hidden members
GroupPermissions.java 6.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Hardware.java 10.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
HardwareType.java 8.2 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
HasAnnotationRestriction.java 2.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Help.java 6.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
HibernateUtil.java 65.2 KB 5038   14 years Nicklas Nordborg References #108: Logging the change history of an item This enables …
HqlQueryJoiners.java 3.5 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
Hybridization.java 11.0 KB 5119   13 years Nicklas Nordborg Fixes #1401: One-to-one associations should not be synchronized in the …
Identifiable.java 1.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Image.java 9.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Include.java 2.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Install.java 102.9 KB 5118   13 years Nicklas Nordborg References #1400: Store the item id together with annotation sets
IntegerParameterType.java 4.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
IntegerUtil.java 4.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
IntensityFormula.java 2.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
IntensityTransform.java 5.1 KB 4916   14 years Nicklas Nordborg References #1120: The dynamic part of BASE should keep track whether …
InternalJobQueue.java 17.1 KB 5043   13 years Nicklas Nordborg Fixes #1355: Add "client application" for internal use
InternalStorageController.java 10.3 KB 5043   13 years Nicklas Nordborg Fixes #1355: Add "client application" for internal use
InvalidAnnotationException.java 1.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
InvalidDataException.java 1.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
InvalidPasswordException.java 1.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
InvalidPathException.java 1.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
InvalidRelationException.java 2.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
InvalidUseOfNullException.java 1.5 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Item.java 25.1 KB 5039   13 years Nicklas Nordborg References #108: Logging the change history of an item * Added core …
ItemAlreadyExistsException.java 1.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemContext.java 42.3 KB 5061   13 years Nicklas Nordborg References #108: Logging the change history of an item * Add 'id' as …
ItemInUseException.java 2.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemKey.java 16.0 KB 5023   14 years Nicklas Nordborg Fixes #1351: Add a function that removes unwanted items from the …
ItemModifiedException.java 2.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemNotFoundException.java 1.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemParameterType.java 2.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemProxy.java 2.2 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
ItemQuery.java 3.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemResultIterator.java 3.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemResultList.java 7.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Job.java 61.7 KB 4983   14 years Nicklas Nordborg References #1324: Check TODO markers in the BASE code No global …
JobAgent.java 17.3 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
JobAgentSettings.java 11.6 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
Key.java 1.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Keyring.java 27.2 KB 5091   13 years Nicklas Nordborg Merged pre-2.13-releases to the trunk.
Label.java 4.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
LabeledExtract.java 8.5 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Location.java 2.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
LogControl.java 3.3 KB 5057   13 years Nicklas Nordborg References #108: Logging the change history of an item * Use …
LogUtil.java 1.7 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
LongParameterType.java 4.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
MappingBatcher.java 8.9 KB 4997   14 years Nicklas Nordborg References #1324: Check TODO markers in the BASE code Mapping is only …
MeanRawDataPropertyExpression.java 2.9 KB 5003   14 years Nicklas Nordborg References #1324: Check TODO markers in the BASE code I guess we'll …
MeasuredBioMaterial.java 11.0 KB 5119   13 years Nicklas Nordborg Fixes #1401: One-to-one associations should not be synchronized in the …
Message.java 9.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Metadata.java 12.1 KB 4993   14 years Nicklas Nordborg References #1324, #1343: Check TODO markers in the BASE code
MimeType.java 9.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
MultiPermissions.java 16.9 KB 5060   13 years Nicklas Nordborg References #108: Logging the change history of an item * Documented …
Nameable.java 3.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
NameableUtil.java 2.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
News.java 8.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
NotLoggedInException.java 1.2 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
NumberOutOfRangeException.java 4.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Operator.java 9.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Ownable.java 2.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
OwnableUtil.java 1.5 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
OwnedItem.java 3.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
package.html 878 bytes 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ParameterException.java 1.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ParameterInfo.java 1.6 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
ParameterType.java 8.5 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ParameterValuesImpl.java 6.7 KB 4941   14 years Nicklas Nordborg Fixes #1315: A plug-in which uses 'execute immediately' can't get the …
Path.java 8.6 KB 4951   14 years Nicklas Nordborg Merged patch release 2.11.1 to the trunk.
PathParameterType.java 3.1 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
Permission.java 7.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PermissionDeniedException.java 2.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Plate.java 15.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PlateEvent.java 11.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PlateEventType.java 9.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PlateGeometry.java 8.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PlateMapping.java 16.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PlateType.java 7.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Platform.java 15.8 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
PlatformFileType.java 7.0 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
PlatformVariant.java 13.6 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
PluginConfiguration.java 22.1 KB 4999   14 years Nicklas Nordborg References #1324: Check TODO markers in the BASE code Plug-in …
PluginConfigurationRequest.java 5.2 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PluginDefinition.java 43.7 KB 5038   14 years Nicklas Nordborg References #108: Logging the change history of an item This enables …
PluginExecutionRequest.java 5.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PluginParameter.java 5.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PluginPermission.java 1.0 KB 4669   14 years Nicklas Nordborg Merged 2.9-stable@4643:4666 to trunk.
PluginRequest.java 9.7 KB 5038   14 years Nicklas Nordborg References #108: Logging the change history of an item This enables …
PluginResponse.java 8.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PluginSessionControl.java 2.9 KB 5038   14 years Nicklas Nordborg References #108: Logging the change history of an item This enables …
PluginType.java 9.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PositionBatcher.java 8.5 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PositionExtraValueBatcher.java 12.0 KB 4992   14 years Nicklas Nordborg References #1324: Check TODO markers in the BASE code We have made it …
PredefinedQuery.java 4.8 KB 5054   13 years Nicklas Nordborg References #108: Logging the change history of an item * Added …
Presets.java 7.6 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
ProgressReporter.java 1.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Project.java 28.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ProjectKey.java 11.8 KB 5023   14 years Nicklas Nordborg Fixes #1351: Add a function that removes unwanted items from the …
ProjectPermissions.java 6.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PropertyFilter.java 24.5 KB 5014   14 years Martin Svensson Fixes #1328 Remove all or most 'continue' statements from the code. …
Protocol.java 13.0 KB 4938   14 years Nicklas Nordborg Fixes #1310: Annotations for protocols The code worked perfectly …
ProtocolType.java 9.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Quantity.java 16.0 KB 4888   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 All *.java, *.jsp and …
QueryExecutor.java 9.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
QueryRuntimeFilter.java 2.5 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
QueryRuntimeFilterFactory.java 15.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
QueryRuntimeFilterManager.java 2.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Quota.java 12.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
QuotaException.java 2.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
QuotaType.java 5.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
RawBioAssay.java 42.7 KB 5026   14 years Nicklas Nordborg References #1350: Update to Hibernate 3.3.2 * Made …
RawDataBatcher.java 20.2 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
RawDataProperty.java 1.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
RawDataPropertyExpression.java 4.6 KB 5003   14 years Nicklas Nordborg References #1324: Check TODO markers in the BASE code I guess we'll …
RawDataType.java 10.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
RawDataTypes.java 16.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
RawDataUtil.java 2.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
RealJoin.java 4.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
RealTable.java 2.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Registered.java 1.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Removable.java 2.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Reporter.java 7.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ReporterBatcher.java 8.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ReporterList.java 22.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ReporterListJoin.java 5.7 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
ReporterPropertyExpression.java 3.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ReporterScore.java 2.2 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
ReporterScoreQuery.java 2.4 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
ReporterScoreResultIterator.java 2.9 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
ReporterType.java 6.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
RequestInformation.java 4.9 KB 4962   14 years Nicklas Nordborg Fixes #1329: A plug-in should be able to use a JSP page from an …
Role.java 11.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
RoleKey.java 7.5 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Sample.java 8.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Scan.java 12.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ScrollIterator.java 2.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
SecondaryStorageController.java 3.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Session.java 5.5 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
SessionControl.java 63.9 KB 5077   13 years Nicklas Nordborg Fixes #1182: Groups with hidden members
Setting.java 4.5 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Shareable.java 3.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ShareableUtil.java 7.5 KB 5060   13 years Nicklas Nordborg References #108: Logging the change history of an item * Documented …
SharedItem.java 3.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
SimpleAbsoluteProgressReporter.java 1.9 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
SimpleProgressReporter.java 2.2 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
Software.java 7.3 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
SoftwareType.java 6.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
SpotBatcher.java 11.3 KB 4992   14 years Nicklas Nordborg References #1324: Check TODO markers in the BASE code We have made it …
SpotExtraValueBatcher.java 11.7 KB 4992   14 years Nicklas Nordborg References #1324: Check TODO markers in the BASE code We have made it …
SpotImage.java 1.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
SpotImages.java 31.1 KB 5014   14 years Martin Svensson Fixes #1328 Remove all or most 'continue' statements from the code. …
StringParameterType.java 3.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
StringTooLongException.java 1.8 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
StringUtil.java 5.1 KB 5114   13 years Nicklas Nordborg References #1386: Plot function in the bioassay table in experiment …
SystemItem.java 2.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
SystemItems.java 4.7 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Transactional.java 2.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Transformation.java 15.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Trashcan.java 9.6 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
Type.java 14.5 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Unit.java 17.4 KB 5014   14 years Martin Svensson Fixes #1328 Remove all or most 'continue' statements from the code. …
UnmodifiableResultList.java 3.3 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
UnsavedItemException.java 2.0 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
UnsupportedFileFormatException.java 2.0 KB 4594   14 years Nicklas Nordborg Fixes #1145: Make the generic raw data importer support batch import
Update.java 92.1 KB 5118   13 years Nicklas Nordborg References #1400: Store the item id together with annotation sets
User.java 38.6 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
UserClientSetting.java 8.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
UserDefaultSetting.java 6.1 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
UserPermissions.java 5.9 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Validatable.java 1.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Values.java 4.0 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Version.java 2.9 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
VirtualColumn.java 9.7 KB 4913   14 years Nicklas Nordborg References #1120: The dynamic part of BASE should keep track whether …
VirtualDb.java 12.4 KB 4889   14 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
VirtualTable.java 9.0 KB 4915   14 years Nicklas Nordborg References #1120: The dynamic part of BASE should keep track whether …
Well.java 10.3 KB 5049   13 years Martin Svensson Fixes #1356 Blank page when listing wells for a plate.
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