source:
trunk/src/core/net/sf/basedb/core
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5855
| Name | Size | Rev | Age | Author | Last Change |
|---|---|---|---|---|---|
| ../ | |||||
| authentication | 5822 | 11 years | References #1575: Add support for authenticator plug-in in external … | ||
| data | 5827 | 11 years | References #1641: Use bcrypt for storing passwords instead of MD5 … | ||
| dbengine | 5855 | 11 years | References #1630: Migrate from MySQL to PostgreSQL Using a file to … | ||
| doc-files | 1538 | 17 years | Implemented delete operation for BioAssaySet?, Transformation and VirtualDb? | ||
| dtd | 5679 | 12 years | References #1589: Delete deprecated classes and methods Removed … | ||
| hibernate | 5854 | 11 years | References #1630: Migrate from MySQL to PostgreSQL The import step … | ||
| log | 5689 | 11 years | Fixes #1612: Remove commented out code that is no longer in use Added … | ||
| plugin | 5729 | 11 years | Fixes #1620: Implement a 'Manual derived bioassay creator' plug-in … | ||
| query | 5818 | 11 years | References #1590: Documentation cleanup Some more sections in the … | ||
| signal | 5689 | 11 years | Fixes #1612: Remove commented out code that is no longer in use Added … | ||
| snapshot | 5740 | 11 years | References #1153: Handling short read transcript sequence data The … | ||
| templates | 5476 | 12 years | References #1489: Update to Hibernate 3.6 Changed URL:s to DTD:s used … | ||
| xsd | 5610 | 12 years | References #1592: Unified installation procedure for plug-ins, … | ||
| AbsoluteProgressReporter.java | 1.5 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| AbstractBatcher.java | 5.6 KB | 5384 | 12 years | References #1498: Investigate and fix issues found by FindBugs? Fixes … | |
| AbstractEntityQuery.java | 8.8 KB | 5319 | 13 years | Merged pre-2.15 changes to the trunk: log:branches/2.15-stable@5251:5317 | |
| AbstractHqlQuery.java | 11.2 KB | 5564 | 12 years | Fixes #1578: Add support for items as query parameters | |
| AbstractQuery.java | 22.7 KB | 5564 | 12 years | Fixes #1578: Add support for items as query parameters | |
| AbstractResultList.java | 3.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| AbstractSqlQuery.java | 10.8 KB | 5689 | 11 years | Fixes #1612: Remove commented out code that is no longer in use Added … | |
| AccessControlled.java | 2.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| AccountExpiredException.java | 1.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| AlreadyLoggedInException.java | 1.3 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Annotatable.java | 2.9 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| AnnotatableProxy.java | 1.9 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| AnnotatedItem.java | 2.7 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Annotation.java | 16.4 KB | 5121 | 13 years | References #1374: Caching of experimental factors This should … | |
| AnnotationBetweenRestriction.java | 5.8 KB | 5817 | 11 years | Fixes #1638: Add support for 'between' operator in list pages | |
| AnnotationInRestriction.java | 3.5 KB | 5590 | 12 years | References #1589: Delete deprecated classes and methods Removed … | |
| AnnotationRestriction.java | 10.0 KB | 5429 | 12 years | References #1512: Add support for datetime annotation types Changed … | |
| AnnotationSet.java | 29.2 KB | 5590 | 12 years | References #1589: Delete deprecated classes and methods Removed … | |
| AnnotationSimpleRestriction.java | 10.3 KB | 5590 | 12 years | References #1589: Delete deprecated classes and methods Removed … | |
| AnnotationType.java | 45.8 KB | 5518 | 12 years | Merged patch release 2.16.1 to the trunk | |
| AnnotationTypeCategory.java | 4.3 KB | 4696 | 14 years | Fixes #1166: Store creation date for items | |
| AnyToAny.java | 20.4 KB | 5689 | 11 years | Fixes #1612: Remove commented out code that is no longer in use Added … | |
| Application.java | 36.0 KB | 5833 | 11 years | References #1591: Upgrade script for BASE 2.17 --> 3.0 Check login … | |
| ArrayBatch.java | 9.8 KB | 5650 | 12 years | References #1597: Subtypes of items Allow selection of more default … | |
| ArrayDesign.java | 24.4 KB | 5590 | 12 years | References #1589: Delete deprecated classes and methods Removed … | |
| ArrayDesignBlock.java | 11.0 KB | 5220 | 13 years | References #1364: Update Hibernate when HHH-4065 has been fixed … | |
| ArrayDesignPlate.java | 5.2 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ArraySlide.java | 9.8 KB | 5642 | 12 years | References #1153: Handling short read transcript sequence data … | |
| BaseException.java | 2.7 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| BasicBatcher.java | 18.8 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| BasicChildItem.java | 3.2 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| BasicItem.java | 16.7 KB | 5818 | 11 years | References #1590: Documentation cleanup Some more sections in the … | |
| BatchedPropertyInfo.java | 1.5 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Batcher.java | 2.6 KB | 5818 | 11 years | References #1590: Documentation cleanup Some more sections in the … | |
| BatchUtil.java | 16.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| BioAssay.java | 12.9 KB | 5319 | 13 years | Merged pre-2.15 changes to the trunk: log:branches/2.15-stable@5251:5317 | |
| BioAssaySet.java | 51.4 KB | 5689 | 11 years | Fixes #1612: Remove commented out code that is no longer in use Added … | |
| BioMaterial.java | 5.5 KB | 5663 | 12 years | References #1153: Handling short read transcript sequence data … | |
| BioMaterialEvent.java | 31.9 KB | 5807 | 11 years | References #1153: Handling short read transcript sequence data Lots … | |
| BioMaterialEventSource.java | 4.2 KB | 5662 | 12 years | References #1153: Handling short read transcript sequence data … | |
| BioMaterialList.java | 23.1 KB | 5014 | 14 years | Fixes #1328 Remove all or most 'continue' statements from the code. … | |
| BioPlate.java | 13.2 KB | 5590 | 12 years | References #1589: Delete deprecated classes and methods Removed … | |
| BioPlateEvent.java | 13.4 KB | 5525 | 12 years | References #1536: Bioplate events (take 2) Added functions in the gui … | |
| BioPlateEventParticipant.java | 8.0 KB | 5523 | 12 years | References #1536: Bioplate events (take 2) Implemented in the core … | |
| BioPlateEventType.java | 7.5 KB | 5642 | 12 years | References #1153: Handling short read transcript sequence data … | |
| BioPlateType.java | 8.9 KB | 5709 | 11 years | References #1597: Subtypes of items Added link to item subtype from … | |
| BioSource.java | 6.0 KB | 5663 | 12 years | References #1153: Handling short read transcript sequence data … | |
| BioWell.java | 13.4 KB | 5566 | 12 years | Fixes #1573: Display number of free (used) wells on a plate (bioplate … | |
| BlockInfo.java | 3.8 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| BooleanParameterType.java | 2.4 KB | 5437 | 12 years | Fixes #1519: Add TimestampParameterType? to plug-in api and provide … | |
| ChangeHistory.java | 13.7 KB | 5689 | 11 years | Fixes #1612: Remove commented out code that is no longer in use Added … | |
| ChildItem.java | 3.7 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Client.java | 9.9 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ClientDefaultSetting.java | 5.7 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Coloring.java | 5.2 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| CommonItem.java | 2.3 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Config.java | 10.2 KB | 5595 | 12 years | References #1592: Unified installation procedure for plug-ins, … | |
| ConfigurationException.java | 1.6 KB | 5384 | 12 years | References #1498: Investigate and fix issues found by FindBugs? Fixes … | |
| ConnectionClosedException.java | 1.2 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ContextKey.java | 2.0 KB | 5818 | 11 years | References #1590: Documentation cleanup Some more sections in the … | |
| Controlled.java | 1.3 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| DatabaseException.java | 1.9 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| DataCube.java | 19.6 KB | 5818 | 11 years | References #1590: Documentation cleanup Some more sections in the … | |
| DataCubeColumn.java | 5.3 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| DataCubeExtraValue.java | 7.0 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| DataCubeFilter.java | 5.7 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| DataCubeLayer.java | 5.6 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| DataFileType.java | 18.1 KB | 5773 | 11 years | References #1152: Handling short read transcript sequence data * … | |
| DataQuery.java | 4.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| DataResultIterator.java | 3.5 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| DateFormatException.java | 1.4 KB | 5430 | 12 years | References #1512: Add support for datetime annotation types The … | |
| DateParameterType.java | 2.9 KB | 5437 | 12 years | Fixes #1519: Add TimestampParameterType? to plug-in api and provide … | |
| DateUtil.java | 4.9 KB | 5430 | 12 years | References #1512: Add support for datetime annotation types The … | |
| DbControl.java | 36.0 KB | 5689 | 11 years | Fixes #1612: Remove commented out code that is no longer in use Added … | |
| DerivedBioAssay.java | 17.1 KB | 5749 | 11 years | References #1153: Handling short read transcript sequence data … | |
| DetachedItemException.java | 1.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Directory.java | 23.8 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| DisallowedValueException.java | 1.8 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| DiskConsumable.java | 2.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| DiskUsage.java | 6.7 KB | 5011 | 14 years | Fixes #1341: Implement DiskUsage?.getUsingItems() | |
| DiskUsageStatistics.java | 8.5 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| DoubleParameterType.java | 4.7 KB | 5437 | 12 years | Fixes #1519: Add TimestampParameterType? to plug-in api and provide … | |
| DynamicExtraValueQuery.java | 2.8 KB | 5319 | 13 years | Merged pre-2.15 changes to the trunk: log:branches/2.15-stable@5251:5317 | |
| DynamicJoin.java | 7.0 KB | 5320 | 13 years | Fixes #1471: Implement equals() and hashCode() in all QueryElement? … | |
| DynamicPositionQuery.java | 7.3 KB | 5711 | 11 years | References #1618: Improve "Reporter search" performance in experiment … | |
| DynamicPositionQueryJoiners.java | 5.9 KB | 5711 | 11 years | References #1618: Improve "Reporter search" performance in experiment … | |
| DynamicQuery.java | 3.6 KB | 5319 | 13 years | Merged pre-2.15 changes to the trunk: log:branches/2.15-stable@5251:5317 | |
| DynamicRawDataQuery.java | 2.9 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| DynamicReporterQuery.java | 4.4 KB | 5711 | 11 years | References #1618: Improve "Reporter search" performance in experiment … | |
| DynamicRestriction.java | 3.6 KB | 5320 | 13 years | Fixes #1471: Implement equals() and hashCode() in all QueryElement? … | |
| DynamicResultIterator.java | 4.9 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| DynamicSpotQuery.java | 10.5 KB | 5711 | 11 years | References #1618: Improve "Reporter search" performance in experiment … | |
| DynamicSpotQueryJoiners.java | 7.1 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| Experiment.java | 25.2 KB | 5345 | 13 years | Fixes #1488: Update to Hibernate 3.5.2 | |
| ExtendedProperties.java | 9.6 KB | 5679 | 12 years | References #1589: Delete deprecated classes and methods Removed … | |
| ExtendedProperty.java | 8.7 KB | 5590 | 12 years | References #1589: Delete deprecated classes and methods Removed … | |
| ExtendedPropertyAccessor.java | 6.1 KB | 5220 | 13 years | References #1364: Update Hibernate when HHH-4065 has been fixed … | |
| ExtendedPropertyLinker.java | 2.1 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| Extract.java | 9.6 KB | 5695 | 11 years | References #1153: Handling short read transcript sequence data Fixes … | |
| ExtraValue.java | 16.8 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ExtraValueExpression.java | 3.2 KB | 5320 | 13 years | Fixes #1471: Implement equals() and hashCode() in all QueryElement? … | |
| ExtraValueJoin.java | 6.9 KB | 5320 | 13 years | Fixes #1471: Implement equals() and hashCode() in all QueryElement? … | |
| ExtraValueType.java | 10.6 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Feature.java | 3.3 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| FeatureBatcher.java | 10.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| FeatureCoordinate.java | 3.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| FeatureIdentificationMethod.java | 5.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| File.java | 50.1 KB | 5718 | 11 years | References #1604: Support for multiple files of the same type in a … | |
| FileAttachable.java | 1.7 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| FileParameterType.java | 2.2 KB | 5437 | 12 years | Fixes #1519: Add TimestampParameterType? to plug-in api and provide … | |
| FileServer.java | 16.2 KB | 5618 | 12 years | Fixes #1596: Force host and port on file server level for external files | |
| FileSet.java | 24.1 KB | 5762 | 11 years | References #1604: Support for multiple files of the same type in a … | |
| FileSetMember.java | 7.2 KB | 5718 | 11 years | References #1604: Support for multiple files of the same type in a … | |
| FileStoreEnabled.java | 2.5 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| FileStoreUtil.java | 12.0 KB | 5764 | 11 years | Fixes #1624: Create array design (feature) importer for GTF files * … | |
| filter-def.hbm.xml | 5.4 KB | 5476 | 12 years | References #1489: Update to Hibernate 3.6 Changed URL:s to DTD:s used … | |
| FilterBatcher.java | 10.6 KB | 5689 | 11 years | Fixes #1612: Remove commented out code that is no longer in use Added … | |
| FloatParameterType.java | 4.1 KB | 5437 | 12 years | Fixes #1519: Add TimestampParameterType? to plug-in api and provide … | |
| Formula.java | 24.8 KB | 5590 | 12 years | References #1589: Delete deprecated classes and methods Removed … | |
| GlobalDefaultSetting.java | 3.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Group.java | 19.7 KB | 5403 | 12 years | Fixes #1507. Burp trying to empty trashcan. | |
| GroupPermissions.java | 6.7 KB | 5368 | 13 years | References #1459: Named permissions keys that store predefined … | |
| Hardware.java | 11.0 KB | 5699 | 11 years | References #1613: Extend the 'roles' test case with some … | |
| HasAnnotationRestriction.java | 3.2 KB | 5320 | 13 years | Fixes #1471: Implement equals() and hashCode() in all QueryElement? … | |
| Help.java | 6.8 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| HibernateUtil.java | 65.9 KB | 5854 | 11 years | References #1630: Migrate from MySQL to PostgreSQL The import step … | |
| HqlQueryJoiners.java | 3.5 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| Identifiable.java | 1.9 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Include.java | 2.6 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Install.java | 109.5 KB | 5853 | 11 years | References #1630: Migrate from MySQL to PostgreSQL Forgot to add the … | |
| IntegerParameterType.java | 4.1 KB | 5437 | 12 years | Fixes #1519: Add TimestampParameterType? to plug-in api and provide … | |
| IntegerUtil.java | 4.0 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| IntensityFormula.java | 2.4 KB | 5384 | 12 years | References #1498: Investigate and fix issues found by FindBugs? Fixes … | |
| IntensityTransform.java | 5.1 KB | 4916 | 14 years | References #1120: The dynamic part of BASE should keep track whether … | |
| InternalJobQueue.java | 17.2 KB | 5406 | 12 years | References #1509: Job queue order after restarting a job Added a … | |
| InternalStorageController.java | 10.1 KB | 5689 | 11 years | Fixes #1612: Remove commented out code that is no longer in use Added … | |
| InvalidAnnotationException.java | 1.8 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| InvalidDataException.java | 1.9 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| InvalidPasswordException.java | 1.7 KB | 5822 | 11 years | References #1575: Add support for authenticator plug-in in external … | |
| InvalidPathException.java | 1.3 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| InvalidRelationException.java | 2.1 KB | 5623 | 12 years | References #1598: Use the extensions system for data file validators … | |
| InvalidUseOfNullException.java | 1.5 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Item.java | 26.2 KB | 5730 | 11 years | References #1591: Upgrade script for BASE 2.17 --> 3.0 * Images to … | |
| ItemAlreadyExistsException.java | 1.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ItemContext.java | 47.5 KB | 5817 | 11 years | Fixes #1638: Add support for 'between' operator in list pages | |
| ItemInUseException.java | 2.0 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ItemKey.java | 16.5 KB | 5629 | 12 years | Merged patch release 2.17.1 to the trunk. | |
| ItemModifiedException.java | 2.6 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ItemNotFoundException.java | 1.8 KB | 5822 | 11 years | References #1575: Add support for authenticator plug-in in external … | |
| ItemParameterType.java | 2.4 KB | 5437 | 12 years | Fixes #1519: Add TimestampParameterType? to plug-in api and provide … | |
| ItemProxy.java | 2.2 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| ItemQuery.java | 3.9 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ItemResultIterator.java | 3.0 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ItemResultList.java | 7.1 KB | 5218 | 13 years | Removed double 'the the' typos. | |
| ItemSubtype.java | 19.7 KB | 5807 | 11 years | References #1153: Handling short read transcript sequence data Lots … | |
| ItemSubtypeFileType.java | 5.4 KB | 5713 | 11 years | References #1604: Support for multiple files of the same type in a … | |
| Job.java | 62.4 KB | 5595 | 12 years | References #1592: Unified installation procedure for plug-ins, … | |
| JobAgent.java | 17.4 KB | 5406 | 12 years | References #1509: Job queue order after restarting a job Added a … | |
| JobAgentSettings.java | 10.0 KB | 5595 | 12 years | References #1592: Unified installation procedure for plug-ins, … | |
| Key.java | 1.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Keyring.java | 27.1 KB | 5829 | 11 years | References #1641: Use bcrypt for storing passwords instead of MD5 … | |
| Location.java | 3.7 KB | 5325 | 13 years | References #1485: File items should be able to reference external … | |
| LogControl.java | 3.5 KB | 5384 | 12 years | References #1498: Investigate and fix issues found by FindBugs? Fixes … | |
| LoginException.java | 1.6 KB | 5822 | 11 years | References #1575: Add support for authenticator plug-in in external … | |
| LogUtil.java | 1.7 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| LongParameterType.java | 4.0 KB | 5437 | 12 years | Fixes #1519: Add TimestampParameterType? to plug-in api and provide … | |
| MappingBatcher.java | 8.9 KB | 4997 | 14 years | References #1324: Check TODO markers in the BASE code Mapping is only … | |
| MeanRawDataPropertyExpression.java | 3.5 KB | 5320 | 13 years | Fixes #1471: Implement equals() and hashCode() in all QueryElement? … | |
| MeasuredBioMaterial.java | 15.6 KB | 5663 | 12 years | References #1153: Handling short read transcript sequence data … | |
| Message.java | 11.9 KB | 5453 | 12 years | Fixes #1524: Send messages as emails Added an internal flag … | |
| Metadata.java | 23.7 KB | 5689 | 11 years | Fixes #1612: Remove commented out code that is no longer in use Added … | |
| Migration.java | 21.2 KB | 5855 | 11 years | References #1630: Migrate from MySQL to PostgreSQL Using a file to … | |
| MimeType.java | 9.7 KB | 5630 | 12 years |
References #1597: Subtypes of items
Added Subtypable interface and …
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| MultiPermissions.java | 17.7 KB | 5689 | 11 years | Fixes #1612: Remove commented out code that is no longer in use Added … | |
| Nameable.java | 3.7 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| NameableUtil.java | 2.0 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| News.java | 8.6 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| NotLoggedInException.java | 1.2 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| NumberOutOfRangeException.java | 4.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Operator.java | 10.0 KB | 5817 | 11 years | Fixes #1638: Add support for 'between' operator in list pages | |
| Ownable.java | 2.6 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| OwnableUtil.java | 1.5 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| OwnedItem.java | 3.7 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| package.html | 878 bytes | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ParameterException.java | 1.3 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ParameterInfo.java | 2.0 KB | 5437 | 12 years | Fixes #1519: Add TimestampParameterType? to plug-in api and provide … | |
| ParameterType.java | 9.0 KB | 5437 | 12 years | Fixes #1519: Add TimestampParameterType? to plug-in api and provide … | |
| ParameterValuesImpl.java | 6.9 KB | 5629 | 12 years | Merged patch release 2.17.1 to the trunk. | |
| Path.java | 8.6 KB | 4951 | 14 years | Merged patch release 2.11.1 to the trunk. | |
| PathParameterType.java | 3.2 KB | 5437 | 12 years | Fixes #1519: Add TimestampParameterType? to plug-in api and provide … | |
| Permission.java | 7.9 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| PermissionDeniedException.java | 2.8 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| PermissionTemplate.java | 4.9 KB | 5368 | 13 years | References #1459: Named permissions keys that store predefined … | |
| PhysicalBioAssay.java | 13.0 KB | 5749 | 11 years | References #1153: Handling short read transcript sequence data … | |
| Plate.java | 15.4 KB | 5319 | 13 years | Merged pre-2.15 changes to the trunk: log:branches/2.15-stable@5251:5317 | |
| PlateEvent.java | 11.0 KB | 5630 | 12 years |
References #1597: Subtypes of items
Added Subtypable interface and …
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| PlateEventType.java | 10.0 KB | 5630 | 12 years |
References #1597: Subtypes of items
Added Subtypable interface and …
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| PlateGeometry.java | 9.5 KB | 5339 | 13 years | References #1442: BioPlate? events Updated isUsed() and … | |
| PlateMapping.java | 16.7 KB | 5452 | 12 years | References #1442: BioPlate? events Remove everything that we doen't … | |
| PlateType.java | 7.0 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Platform.java | 15.7 KB | 5764 | 11 years | Fixes #1624: Create array design (feature) importer for GTF files * … | |
| PlatformFileType.java | 7.6 KB | 5713 | 11 years | References #1604: Support for multiple files of the same type in a … | |
| PlatformVariant.java | 13.2 KB | 5764 | 11 years | Fixes #1624: Create array design (feature) importer for GTF files * … | |
| PluginConfiguration.java | 26.3 KB | 5617 | 12 years | References #1592: Unified installation procedure for plug-ins, … | |
| PluginConfigurationRequest.java | 5.2 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| PluginDefinition.java | 45.5 KB | 5821 | 11 years | References #1592: Unified installation procedure for plug-ins, … | |
| PluginExecutionRequest.java | 5.4 KB | 5414 | 12 years | References #1509: Job queue order after restarting a job Fixes a … | |
| PluginParameter.java | 5.0 KB | 5218 | 13 years | Removed double 'the the' typos. | |
| PluginPermission.java | 1.0 KB | 4669 | 14 years | Merged 2.9-stable@4643:4666 to trunk. | |
| PluginRequest.java | 9.7 KB | 5038 | 14 years | References #108: Logging the change history of an item This enables … | |
| PluginResponse.java | 9.2 KB | 5480 | 12 years | References #1542: Plug-ins should be able to suggest a better job name … | |
| PluginSessionControl.java | 2.8 KB | 5827 | 11 years | References #1641: Use bcrypt for storing passwords instead of MD5 … | |
| PluginType.java | 10.2 KB | 5613 | 12 years | References #1592: Unified installation procedure for plug-ins, … | |
| PositionBatcher.java | 8.5 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| PositionExtraValueBatcher.java | 12.0 KB | 5218 | 13 years | Removed double 'the the' typos. | |
| PredefinedQuery.java | 4.8 KB | 5054 | 13 years | References #108: Logging the change history of an item * Added … | |
| Presets.java | 7.9 KB | 5616 | 12 years | References #1592: Unified installation procedure for plug-ins, … | |
| ProgressReporter.java | 1.4 KB | 5325 | 13 years | References #1485: File items should be able to reference external … | |
| Project.java | 34.6 KB | 5814 | 11 years | References #1597: Subtypes of items Validation rules for "project … | |
| ProjectKey.java | 11.7 KB | 5629 | 12 years | Merged patch release 2.17.1 to the trunk. | |
| ProjectPermissions.java | 7.5 KB | 5368 | 13 years | References #1459: Named permissions keys that store predefined … | |
| PropertyFilter.java | 25.2 KB | 5817 | 11 years | Fixes #1638: Add support for 'between' operator in list pages | |
| Protocol.java | 17.2 KB | 5699 | 11 years | References #1613: Extend the 'roles' test case with some … | |
| Quantity.java | 16.0 KB | 4888 | 14 years | References #1290: Change source files to UTF-8 All *.java, *.jsp and … | |
| QueryExecutor.java | 9.5 KB | 5689 | 11 years | Fixes #1612: Remove commented out code that is no longer in use Added … | |
| QueryRuntimeFilter.java | 2.5 KB | 5818 | 11 years | References #1590: Documentation cleanup Some more sections in the … | |
| QueryRuntimeFilterFactory.java | 15.8 KB | 5818 | 11 years | References #1590: Documentation cleanup Some more sections in the … | |
| QueryRuntimeFilterManager.java | 2.5 KB | 5818 | 11 years | References #1590: Documentation cleanup Some more sections in the … | |
| Quota.java | 12.9 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| QuotaException.java | 2.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| QuotaType.java | 5.3 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| RawBioAssay.java | 41.3 KB | 5807 | 11 years | References #1153: Handling short read transcript sequence data Lots … | |
| RawDataBatcher.java | 20.0 KB | 5590 | 12 years | References #1589: Delete deprecated classes and methods Removed … | |
| RawDataProperty.java | 1.7 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| RawDataPropertyExpression.java | 5.1 KB | 5320 | 13 years | Fixes #1471: Implement equals() and hashCode() in all QueryElement? … | |
| RawDataType.java | 9.8 KB | 5590 | 12 years | References #1589: Delete deprecated classes and methods Removed … | |
| RawDataTypes.java | 17.0 KB | 5679 | 12 years | References #1589: Delete deprecated classes and methods Removed … | |
| RawDataUtil.java | 2.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| RealJoin.java | 5.4 KB | 5320 | 13 years | Fixes #1471: Implement equals() and hashCode() in all QueryElement? … | |
| RealTable.java | 2.7 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Registered.java | 1.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Removable.java | 2.3 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Reporter.java | 7.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ReporterBatcher.java | 8.7 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ReporterList.java | 22.0 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ReporterListJoin.java | 6.7 KB | 5711 | 11 years | References #1618: Improve "Reporter search" performance in experiment … | |
| ReporterPropertyExpression.java | 4.1 KB | 5384 | 12 years | References #1498: Investigate and fix issues found by FindBugs? Fixes … | |
| ReporterScore.java | 2.2 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| ReporterScoreQuery.java | 2.4 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| ReporterScoreResultIterator.java | 2.9 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| ReporterType.java | 6.8 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| RequestInformation.java | 4.9 KB | 4962 | 14 years | Fixes #1329: A plug-in should be able to use a JSP page from an … | |
| Role.java | 11.3 KB | 5818 | 11 years | References #1590: Documentation cleanup Some more sections in the … | |
| RoleKey.java | 7.5 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Sample.java | 8.6 KB | 5688 | 11 years | References #1153: Handling short read transcript sequence data Fixes … | |
| ScrollIterator.java | 2.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| SecondaryStorageController.java | 3.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Session.java | 5.5 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| SessionControl.java | 65.5 KB | 5829 | 11 years | References #1641: Use bcrypt for storing passwords instead of MD5 … | |
| Setting.java | 4.5 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Shareable.java | 3.6 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| ShareableUtil.java | 9.9 KB | 5590 | 12 years | References #1589: Delete deprecated classes and methods Removed … | |
| SharedItem.java | 3.9 KB | 5368 | 13 years | References #1459: Named permissions keys that store predefined … | |
| SimpleAbsoluteProgressReporter.java | 2.6 KB | 5374 | 13 years | References #1479: Create BASEfile importer for the external program … | |
| SimpleProgressReporter.java | 2.2 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| Software.java | 8.2 KB | 5685 | 12 years | References #1153: Handling short read transcript sequence data … | |
| SpecialQuery.java | 2.5 KB | 5662 | 12 years | References #1153: Handling short read transcript sequence data … | |
| SpotBatcher.java | 11.3 KB | 4992 | 14 years | References #1324: Check TODO markers in the BASE code We have made it … | |
| SpotExtraValueBatcher.java | 11.7 KB | 5218 | 13 years | Removed double 'the the' typos. | |
| SpotImage.java | 1.8 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| SpotImages.java | 31.1 KB | 5630 | 12 years |
References #1597: Subtypes of items
Added Subtypable interface and …
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| StringParameterType.java | 4.1 KB | 5437 | 12 years | Fixes #1519: Add TimestampParameterType? to plug-in api and provide … | |
| StringTooLongException.java | 1.8 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| StringUtil.java | 8.2 KB | 5534 | 12 years | Fixes #1565: Command line options for the external program executor … | |
| Subtypable.java | 1.3 KB | 5631 | 12 years | References #1597: Subtypes of items Added support for subtypes with … | |
| SubtypableRelatedItems.java | 1.5 KB | 5823 | 11 years | References #1590: Documentation cleanup Fixed javadoc warnings. | |
| SystemItem.java | 2.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| SystemItems.java | 4.7 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Tag.java | 4.9 KB | 5641 | 12 years | References #1153: Handling short read transcript sequence data … | |
| TimestampParameterType.java | 2.8 KB | 5437 | 12 years | Fixes #1519: Add TimestampParameterType? to plug-in api and provide … | |
| Transactional.java | 2.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Transformation.java | 15.9 KB | 5689 | 11 years | Fixes #1612: Remove commented out code that is no longer in use Added … | |
| Trashcan.java | 9.6 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| Type.java | 15.3 KB | 5776 | 11 years | Fixes #1633: NumberFormatException? when parsing NaN values | |
| Unit.java | 17.7 KB | 5689 | 11 years | Fixes #1612: Remove commented out code that is no longer in use Added … | |
| UnmodifiableResultList.java | 3.3 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| UnsavedItemException.java | 2.0 KB | 4517 | 14 years | Addresses #1106. Missed to change reference wherefrom retrive GPLv3 … | |
| UnsupportedFileFormatException.java | 2.0 KB | 4594 | 14 years | Fixes #1145: Make the generic raw data importer support batch import | |
| Update.java | 63.6 KB | 5837 | 11 years | References #1591: Upgrade script for BASE 2.17 --> 3.0 Create a … | |
| UsableDataFileType.java | 1.4 KB | 5713 | 11 years | References #1604: Support for multiple files of the same type in a … | |
| User.java | 40.2 KB | 5829 | 11 years | References #1641: Use bcrypt for storing passwords instead of MD5 … | |
| UserClientSetting.java | 8.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| UserDefaultSetting.java | 6.1 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| UserPermissions.java | 6.7 KB | 5368 | 13 years | References #1459: Named permissions keys that store predefined … | |
| Validatable.java | 1.4 KB | 4889 | 14 years | References #1290: Change source files to UTF-8 Changed 'Hakkinen' to … | |
| Values.java | 4.1 KB | 5384 | 12 years | References #1498: Investigate and fix issues found by FindBugs? Fixes … | |
| Version.java | 4.7 KB | 5607 | 12 years | References #1593: Extension system for the core API References #1592: … | |
| VirtualColumn.java | 9.7 KB | 5590 | 12 years | References #1589: Delete deprecated classes and methods Removed … | |
| VirtualDb.java | 12.3 KB | 5689 | 11 years | Fixes #1612: Remove commented out code that is no longer in use Added … | |
| VirtualTable.java | 9.1 KB | 5854 | 11 years | References #1630: Migrate from MySQL to PostgreSQL The import step … | |
| Well.java | 10.4 KB | 5319 | 13 years | Merged pre-2.15 changes to the trunk: log:branches/2.15-stable@5251:5317 | |
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