source: trunk/src/core/net/sf/basedb/core @ 6733

Name Size Rev Age Author Last Change
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authentication 6427   8 years Nicklas Nordborg References #1599: Convert authentication plug-in system to an …
data 6728   7 years Nicklas Nordborg References #1910: Disable annotation inheritance for annotation types …
dbengine 6721   7 years Nicklas Nordborg Merged patch release 3.4.1 to trunk.
doc-files 1538   17 years Nicklas Nordborg Implemented delete operation for BioAssaySet?, Transformation and VirtualDb?
dtd 6428   8 years Nicklas Nordborg References #1599: Convert authentication plug-in system to an …
hibernate 6684   7 years Nicklas Nordborg Merge changes between 3.4-beta-1 to 3.4.0 to the trunk.
log 6520   8 years Nicklas Nordborg Merge changes between 3.3-beta-2 and 3.3.0 to trunk.
migrate 5896   11 years Nicklas Nordborg References #1630: Migrate from MySQL to PostgreSQL Refactored …
plugin 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
query 6697   7 years Nicklas Nordborg References #1912: Add more filter rows in list pages Added support …
signal 6684   7 years Nicklas Nordborg Merge changes between 3.4-beta-1 to 3.4.0 to the trunk.
snapshot 6733   7 years Nicklas Nordborg References #1910: Disable annotation inheritance for annotation types …
templates 5476   12 years Nicklas Nordborg References #1489: Update to Hibernate 3.6 Changed URL:s to DTD:s used …
xsd 6408   8 years Nicklas Nordborg References #1712: Implement a 'Content Security Policy' Added …
AbsoluteProgressReporter.java 1.5 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
AbstractBatcher.java 5.6 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
AbstractEntityQuery.java 8.9 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
AbstractHqlQuery.java 11.2 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
AbstractQuery.java 23.4 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
AbstractResultList.java 3.6 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
AbstractSqlQuery.java 14.1 KB 6469   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Replaced calls to …
AccessControlled.java 2.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AccountExpiredException.java 1.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AlreadyLoggedInException.java 1.3 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Annotatable.java 3.1 KB 5983   10 years Nicklas Nordborg References #1605: Inherit annotations from a child path Added support …
AnnotatableProxy.java 1.9 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AnnotatedItem.java 2.5 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
Annotation.java 18.2 KB 6202   10 years Nicklas Nordborg References #1729 and #1730. Fixed for the "edit annotations" tab.
AnnotationBetweenRestriction.java 7.0 KB 6686   7 years Nicklas Nordborg References #1906: Display inherited annotations in list views …
AnnotationInRestriction.java 4.1 KB 6686   7 years Nicklas Nordborg References #1906: Display inherited annotations in list views …
AnnotationRestriction.java 10.4 KB 6686   7 years Nicklas Nordborg References #1906: Display inherited annotations in list views …
AnnotationSet.java 36.8 KB 6732   7 years Nicklas Nordborg References #1910: Disable annotation inheritance for annotation types …
AnnotationSimpleRestriction.java 11.9 KB 6686   7 years Nicklas Nordborg References #1906: Display inherited annotations in list views …
AnnotationType.java 48.3 KB 6733   7 years Nicklas Nordborg References #1910: Disable annotation inheritance for annotation types …
AnnotationTypeCategory.java 4.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
AnyToAny.java 20.9 KB 6721   7 years Nicklas Nordborg Merged patch release 3.4.1 to trunk.
Application.java 35.7 KB 6721   7 years Nicklas Nordborg Merged patch release 3.4.1 to trunk.
ArrayBatch.java 9.8 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ArrayDesign.java 24.2 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
ArrayDesignBlock.java 11.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ArrayDesignPlate.java 5.2 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ArraySlide.java 9.8 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
AuthenticationContext.java 4.2 KB 6429   8 years Nicklas Nordborg References #1599: Convert authentication plug-in system to an …
BaseException.java 2.7 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BasicBatcher.java 18.8 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
BasicChildItem.java 3.2 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
BasicItem.java 16.6 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
BatchedPropertyInfo.java 1.5 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Batcher.java 2.6 KB 5818   11 years Nicklas Nordborg References #1590: Documentation cleanup Some more sections in the …
BatchUtil.java 16.0 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
BioAssay.java 13.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
BioAssaySet.java 51.2 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
BioMaterial.java 7.3 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
BioMaterialEvent.java 33.3 KB 6600   8 years Nicklas Nordborg Merge BASE 3.3.3 to the trunk. There is a test failure in "TestFile?" …
BioMaterialEventSource.java 6.0 KB 6600   8 years Nicklas Nordborg Merge BASE 3.3.3 to the trunk. There is a test failure in "TestFile?" …
BioMaterialList.java 23.3 KB 6390   8 years Nicklas Nordborg Fixes #1795: Biomaterial lists should be annotatable No schema …
BioPlate.java 16.3 KB 6061   10 years Nicklas Nordborg References #1696: Create a coordinate system for 'storage location' …
BioPlateEvent.java 13.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
BioPlateEventParticipant.java 8.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
BioPlateEventType.java 7.6 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
BioPlateType.java 10.0 KB 6132   10 years Nicklas Nordborg Fixes #1726: Fix javadoc warnings
BioSource.java 5.9 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
BioWell.java 13.7 KB 6042   10 years Nicklas Nordborg Fixes #1682: Extend the item overview to bioplate items Added …
BlockInfo.java 3.8 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BooleanParameterType.java 2.4 KB 6372   9 years Nicklas Nordborg Merged patch release 3.2.4 to the trunk.
ChangeHistory.java 14.8 KB 6721   7 years Nicklas Nordborg Merged patch release 3.4.1 to trunk.
ChildItem.java 4.1 KB 6540   8 years Nicklas Nordborg Merged patch release 3.3.1 to the trunk.
Client.java 9.9 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ClientDefaultSetting.java 5.7 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ClonableProperty.java 11.0 KB 6428   8 years Nicklas Nordborg References #1599: Convert authentication plug-in system to an …
ClonableReporterQuery.java 1.9 KB 5897   11 years Nicklas Nordborg References #1616: Clone reporter information to per-experiment tables …
Coloring.java 5.3 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
CommonItem.java 2.1 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
Config.java 10.2 KB 5595   11 years Nicklas Nordborg References #1592: Unified installation procedure for plug-ins, …
ConfigurationException.java 1.6 KB 5384   12 years Nicklas Nordborg References #1498: Investigate and fix issues found by FindBugs? Fixes …
ConnectionClosedException.java 1.2 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ContextKey.java 2.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Controlled.java 1.3 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DatabaseException.java 1.9 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DataCube.java 19.6 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DataCubeColumn.java 5.3 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DataCubeExtraValue.java 7.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DataCubeFilter.java 5.7 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DataCubeLayer.java 5.6 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DataFileType.java 17.8 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
DataQuery.java 4.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DataResultIterator.java 3.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DateFormatException.java 1.4 KB 5430   12 years Nicklas Nordborg References #1512: Add support for datetime annotation types The …
DateParameterType.java 2.9 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DateUtil.java 4.9 KB 5430   12 years Nicklas Nordborg References #1512: Add support for datetime annotation types The …
DbControl.java 39.0 KB 6684   7 years Nicklas Nordborg Merge changes between 3.4-beta-1 to 3.4.0 to the trunk.
DerivedBioAssay.java 28.7 KB 6540   8 years Nicklas Nordborg Merged patch release 3.3.1 to the trunk.
DetachedItemException.java 1.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Directory.java 25.0 KB 6520   8 years Nicklas Nordborg Merge changes between 3.3-beta-2 and 3.3.0 to trunk.
DisallowedValueException.java 1.8 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
DiskConsumable.java 2.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DiskUsage.java 6.7 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DiskUsageStatistics.java 8.5 KB 6619   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Fixed an issue with …
DoubleParameterType.java 4.7 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DropDynamicTableAction.java 1.9 KB 5877   11 years Nicklas Nordborg References #1616: Clone reporter information to per-experiment tables …
DynamicExtraValueQuery.java 2.8 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicJoin.java 8.1 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicPositionQuery.java 8.8 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicPositionQueryJoiners.java 6.1 KB 6026   10 years Nicklas Nordborg References #1673: Allow sorting table listings on single-valued …
DynamicQuery.java 5.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicRawDataQuery.java 3.9 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicReporterQuery.java 8.2 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicRestriction.java 3.6 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicResultIterator.java 5.0 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
DynamicSpotQuery.java 11.8 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
DynamicSpotQueryJoiners.java 7.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Experiment.java 26.8 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
ExtendedProperties.java 9.6 KB 6473   8 years Nicklas Nordborg References #1809: Upgrade 3-rd party libraries Updated JDOM to 2.0.5. …
ExtendedProperty.java 8.6 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
ExtendedPropertyAccessor.java 6.2 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
ExtendedPropertyLinker.java 2.1 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
Extract.java 10.2 KB 6383   9 years Nicklas Nordborg References #1733: Tag items should be annotatable Fixes the …
ExtraValue.java 16.9 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ExtraValueExpression.java 3.2 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ExtraValueJoin.java 7.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ExtraValueType.java 10.7 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Feature.java 3.2 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
FeatureBatcher.java 10.1 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
FeatureCoordinate.java 3.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
FeatureIdentificationMethod.java 5.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
File.java 50.6 KB 6520   8 years Nicklas Nordborg Merge changes between 3.3-beta-2 and 3.3.0 to trunk.
FileAttachable.java 1.7 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
FileParameterType.java 2.3 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
FileServer.java 18.8 KB 6657   8 years Nicklas Nordborg Fixes #1811: Remove deprecated methods and classes related to …
FileSet.java 24.1 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
FileSetMember.java 7.0 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
FileStoreEnabled.java 2.5 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
FileStoreUtil.java 12.0 KB 5764   11 years Nicklas Nordborg Fixes #1624: Create array design (feature) importer for GTF files * …
filter-def.hbm.xml 5.7 KB 6037   10 years Nicklas Nordborg Merge patch release 3.1.1 to the trunk.
FilterBatcher.java 10.5 KB 6469   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Replaced calls to …
FloatParameterType.java 4.1 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Formula.java 24.9 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
GlobalDefaultSetting.java 3.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Group.java 19.8 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
GroupPermissions.java 6.7 KB 5368   12 years Nicklas Nordborg References #1459: Named permissions keys that store predefined …
Hardware.java 11.5 KB 6333   9 years olle Refs #1771. Class\file Hardware.java in …
HasAnnotationRestriction.java 4.1 KB 6686   7 years Nicklas Nordborg References #1906: Display inherited annotations in list views …
Help.java 6.8 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
HibernateUtil.java 62.8 KB 6721   7 years Nicklas Nordborg Merged patch release 3.4.1 to trunk.
HqlQueryJoiners.java 5.2 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Identifiable.java 1.9 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Include.java 2.6 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Install.java 111.0 KB 6728   7 years Nicklas Nordborg References #1910: Disable annotation inheritance for annotation types …
IntegerParameterType.java 4.1 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
IntegerUtil.java 4.0 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
IntensityFormula.java 2.4 KB 5384   12 years Nicklas Nordborg References #1498: Investigate and fix issues found by FindBugs? Fixes …
IntensityTransform.java 7.2 KB 6372   9 years Nicklas Nordborg Merged patch release 3.2.4 to the trunk.
InternalJobQueue.java 18.9 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
InternalStorageController.java 10.2 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
InvalidAnnotationException.java 1.8 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
InvalidDataException.java 1.9 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
InvalidPasswordException.java 1.7 KB 5822   11 years Nicklas Nordborg References #1575: Add support for authenticator plug-in in external …
InvalidPathException.java 1.3 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
InvalidRelationException.java 2.1 KB 5623   11 years Nicklas Nordborg References #1598: Use the extensions system for data file validators …
InvalidUseOfNullException.java 1.5 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Item.java 27.3 KB 6355   9 years Nicklas Nordborg References #1784: Add support for logging old values Added permission …
ItemAlreadyExistsException.java 1.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemContext.java 59.1 KB 6700   7 years Nicklas Nordborg References #1912: Add more filter rows in list pages Added support …
ItemInUseException.java 2.0 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemKey.java 16.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ItemModifiedException.java 2.6 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemNotFoundException.java 1.8 KB 5822   11 years Nicklas Nordborg References #1575: Add support for authenticator plug-in in external …
ItemParameterType.java 2.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ItemProxy.java 2.3 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ItemQuery.java 3.9 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemResultIterator.java 3.1 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ItemResultList.java 7.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ItemSubtype.java 21.2 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
ItemSubtypeFileType.java 5.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Job.java 71.2 KB 6576   8 years Nicklas Nordborg Merged patch release 3.3.2 to the trunk.
JobAgent.java 17.3 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
JobAgentSettings.java 10.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Key.java 1.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Keyring.java 27.3 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
Location.java 3.7 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
LogControl.java 3.5 KB 6080   10 years Nicklas Nordborg References #1601: Convert logging plug-in system to an extension point …
LoginException.java 1.6 KB 5822   11 years Nicklas Nordborg References #1575: Add support for authenticator plug-in in external …
LogUtil.java 1.7 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
LongParameterType.java 4.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
MappingBatcher.java 8.9 KB 6469   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Replaced calls to …
MeanRawDataPropertyExpression.java 3.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
MeasuredBioMaterial.java 19.3 KB 6456   8 years Nicklas Nordborg Fixes #1806: Fail to load upstream extracts from physical bioassays …
Message.java 12.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Metadata.java 24.1 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
Migration.java 31.6 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
MimeType.java 9.8 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
MultiPermissions.java 17.7 KB 5689   11 years Nicklas Nordborg Fixes #1612: Remove commented out code that is no longer in use Added …
Nameable.java 3.7 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
NameableUtil.java 2.0 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
News.java 8.7 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
NotLoggedInException.java 1.2 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
NumberOutOfRangeException.java 4.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Operator.java 10.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Ownable.java 2.6 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
OwnableUtil.java 1.5 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
OwnedItem.java 3.6 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
package.html 878 bytes 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ParameterException.java 1.3 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ParameterInfo.java 2.0 KB 5437   12 years Nicklas Nordborg Fixes #1519: Add TimestampParameterType? to plug-in api and provide …
ParameterType.java 9.3 KB 6372   9 years Nicklas Nordborg Merged patch release 3.2.4 to the trunk.
ParameterValuesImpl.java 7.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Path.java 8.6 KB 4951   13 years Nicklas Nordborg Merged patch release 2.11.1 to the trunk.
PathParameterType.java 3.2 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Permission.java 8.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
PermissionDeniedException.java 2.8 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PermissionTemplate.java 4.9 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
PhysicalBioAssay.java 14.2 KB 6328   9 years olle Refs #1771. Support for annotatable Hardware items added.
Plate.java 15.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
PlateEvent.java 11.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
PlateEventType.java 10.1 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
PlateGeometry.java 9.6 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
PlateMapping.java 16.7 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
PlateType.java 7.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Platform.java 15.8 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
PlatformFileType.java 7.6 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
PlatformVariant.java 13.3 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
PluginConfiguration.java 26.3 KB 6656   8 years Nicklas Nordborg Fixes #1810: Remove JDOM 1.1
PluginConfigurationRequest.java 5.2 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PluginDefinition.java 45.6 KB 6640   8 years Nicklas Nordborg Merged patch release 3.3.4 to the trunk.
PluginExecutionRequest.java 5.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
PluginParameter.java 5.0 KB 5218   12 years Jari Häkkinen Removed double 'the the' typos.
PluginPermission.java 1.0 KB 4669   14 years Nicklas Nordborg Merged 2.9-stable@4643:4666 to trunk.
PluginRequest.java 9.7 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
PluginResponse.java 9.3 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
PluginSessionControl.java 3.0 KB 6437   8 years Nicklas Nordborg References #1599: Convert authentication plug-in system to an …
PluginType.java 10.2 KB 6640   8 years Nicklas Nordborg Merged patch release 3.3.4 to the trunk.
PositionBatcher.java 8.5 KB 6469   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Replaced calls to …
PositionExtraValueBatcher.java 11.9 KB 6469   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Replaced calls to …
PredefinedQuery.java 4.8 KB 6473   8 years Nicklas Nordborg References #1809: Upgrade 3-rd party libraries Updated JDOM to 2.0.5. …
Presets.java 8.1 KB 6627   8 years Nicklas Nordborg Fixes #1891: Allow extensions to store settings in …
ProgressReporter.java 1.4 KB 5325   12 years Nicklas Nordborg References #1485: File items should be able to reference external …
Project.java 36.1 KB 6576   8 years Nicklas Nordborg Merged patch release 3.3.2 to the trunk.
ProjectKey.java 11.7 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ProjectPermissions.java 7.5 KB 5368   12 years Nicklas Nordborg References #1459: Named permissions keys that store predefined …
PropertyFilter.java 28.7 KB 6697   7 years Nicklas Nordborg References #1912: Add more filter rows in list pages Added support …
Protocol.java 17.2 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
Quantity.java 16.1 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
QueryExecutor.java 10.0 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
QueryRuntimeFilter.java 2.5 KB 5818   11 years Nicklas Nordborg References #1590: Documentation cleanup Some more sections in the …
QueryRuntimeFilterFactory.java 15.9 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
QueryRuntimeFilterManager.java 2.5 KB 5818   11 years Nicklas Nordborg References #1590: Documentation cleanup Some more sections in the …
Quota.java 13.1 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
QuotaException.java 2.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
QuotaType.java 5.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
RawBioAssay.java 41.1 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
RawDataBatcher.java 21.8 KB 6600   8 years Nicklas Nordborg Merge BASE 3.3.3 to the trunk. There is a test failure in "TestFile?" …
RawDataProperty.java 1.7 KB 6428   8 years Nicklas Nordborg References #1599: Convert authentication plug-in system to an …
RawDataPropertyExpression.java 5.1 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
RawDataType.java 9.8 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
RawDataTypes.java 16.8 KB 6684   7 years Nicklas Nordborg Merge changes between 3.4-beta-1 to 3.4.0 to the trunk.
RawDataUtil.java 2.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
RealJoin.java 6.6 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
RealTable.java 2.7 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Registered.java 1.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Removable.java 2.3 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Reporter.java 11.6 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
ReporterBatcher.java 8.7 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ReporterCloneBatcher.java 12.9 KB 5897   11 years Nicklas Nordborg References #1616: Clone reporter information to per-experiment tables …
ReporterCloneTemplate.java 11.1 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ReporterList.java 21.7 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
ReporterListJoin.java 6.8 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ReporterPropertyExpression.java 6.2 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ReporterScore.java 2.2 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
ReporterScoreQuery.java 2.4 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
ReporterScoreResultIterator.java 3.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ReporterType.java 6.9 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
RequestInformation.java 4.9 KB 4962   13 years Nicklas Nordborg Fixes #1329: A plug-in should be able to use a JSP page from an …
Role.java 11.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
RoleKey.java 7.6 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Sample.java 8.6 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ScrollIterator.java 2.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
SecondaryStorageController.java 3.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ServiceSessionControl.java 11.8 KB 6684   7 years Nicklas Nordborg Merge changes between 3.4-beta-1 to 3.4.0 to the trunk.
ServicesUtil.java 1.9 KB 6630   8 years Nicklas Nordborg References #1892: Implement support for extensions to add their own …
Session.java 5.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
SessionControl.java 69.6 KB 6688   7 years Nicklas Nordborg Fixes #1909: Add short delay in login method
Setting.java 4.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Shareable.java 3.6 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ShareableUtil.java 9.9 KB 5590   11 years Nicklas Nordborg References #1589: Delete deprecated classes and methods Removed …
SharedItem.java 3.8 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
SimpleAbsoluteProgressReporter.java 2.6 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
SimpleProgressReporter.java 2.6 KB 6694   7 years Nicklas Nordborg References #1908: Batch inheriting multiple annotations Added …
Software.java 8.5 KB 6334   9 years olle Refs #1772. Support for annotatable Software items added.
SpecialQuery.java 2.5 KB 5662   11 years Nicklas Nordborg References #1153: Handling short read transcript sequence data …
SpotBatcher.java 11.2 KB 6469   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Replaced calls to …
SpotExtraValueBatcher.java 11.7 KB 6469   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Replaced calls to …
SpotImage.java 1.8 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
SpotImages.java 31.1 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
StringParameterType.java 4.4 KB 6372   9 years Nicklas Nordborg Merged patch release 3.2.4 to the trunk.
StringTooLongException.java 1.8 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
StringUtil.java 8.6 KB 6022   10 years Nicklas Nordborg Fixes #1672: Join annotation values into a main item query There is …
Subtypable.java 1.3 KB 5631   11 years Nicklas Nordborg References #1597: Subtypes of items Added support for subtypes with …
SubtypableRelatedItems.java 1.5 KB 5823   11 years Nicklas Nordborg References #1590: Documentation cleanup Fixed javadoc warnings.
SupportsPushAnnotations.java 1.6 KB 5983   10 years Nicklas Nordborg References #1605: Inherit annotations from a child path Added support …
SystemItem.java 2.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
SystemItems.java 4.7 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Tag.java 5.1 KB 6335   9 years olle Refs #1773. Support for annotatable Tag items added.
TimestampParameterType.java 2.8 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Transactional.java 2.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
TransactionalAction.java 1.6 KB 5877   11 years Nicklas Nordborg References #1616: Clone reporter information to per-experiment tables …
Transformation.java 16.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Trashcan.java 10.3 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
Type.java 19.0 KB 6539   8 years Nicklas Nordborg References #1843: Use snapshot manager to load annotations on list …
Unit.java 19.0 KB 6540   8 years Nicklas Nordborg Merged patch release 3.3.1 to the trunk.
UnmodifiableResultList.java 3.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
UnsavedItemException.java 2.0 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
UnsupportedFileFormatException.java 2.0 KB 4594   14 years Nicklas Nordborg Fixes #1145: Make the generic raw data importer support batch import
Update.java 42.6 KB 6728   7 years Nicklas Nordborg References #1910: Disable annotation inheritance for annotation types …
UsableDataFileType.java 1.4 KB 5713   11 years Nicklas Nordborg References #1604: Support for multiple files of the same type in a …
User.java 40.5 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
UserClientSetting.java 8.1 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
UserDefaultSetting.java 6.1 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
UserPermissions.java 6.7 KB 5368   12 years Nicklas Nordborg References #1459: Named permissions keys that store predefined …
Validatable.java 1.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Values.java 4.1 KB 5384   12 years Nicklas Nordborg References #1498: Investigate and fix issues found by FindBugs? Fixes …
Version.java 4.7 KB 5607   11 years Nicklas Nordborg References #1593: Extension system for the core API References #1592: …
VirtualColumn.java 12.3 KB 5885   11 years Nicklas Nordborg References #1616: Clone reporter information to per-experiment tables …
VirtualDb.java 14.0 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
VirtualTable.java 12.3 KB 5888   11 years Nicklas Nordborg References #1630: Migrate from MySQL to PostgreSQL Implemented some …
Well.java 10.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
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