source: trunk/src/core/net/sf/basedb/core @ 7211

Name Size Rev Age Author Last Change
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authentication 7165   6 years Nicklas Nordborg Fixes #2015: Store authentication method in the session log Database …
data 7199   6 years Nicklas Nordborg References #2029: Projects should be annotatable Added support for …
dbengine 7075   6 years Nicklas Nordborg References #1979: Upgrade to Hibernate 5 Reintegrates changes made in …
doc-files 1538   17 years Nicklas Nordborg Implemented delete operation for BioAssaySet?, Transformation and VirtualDb?
dtd 6428   8 years Nicklas Nordborg References #1599: Convert authentication plug-in system to an …
hibernate 7156   6 years Nicklas Nordborg References #2009: PostgreSQL seems to be loading entire result set …
log 7164   6 years Nicklas Nordborg References #2013: Add support for logging when items are viewed Added …
migrate 5896   10 years Nicklas Nordborg References #1630: Migrate from MySQL to PostgreSQL Refactored …
plugin 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
query 7151   6 years Nicklas Nordborg References #2004: Raw data query for multiple raw bioassays Added …
signal 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
snapshot 7052   6 years Nicklas Nordborg Merge pre-3.7 changes to the the trunk.
templates 7075   6 years Nicklas Nordborg References #1979: Upgrade to Hibernate 5 Reintegrates changes made in …
xsd 7075   6 years Nicklas Nordborg References #1979: Upgrade to Hibernate 5 Reintegrates changes made in …
AbsoluteProgressReporter.java 1.5 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
AbstractBatcher.java 5.6 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
AbstractEntityQuery.java 9.3 KB 7014   7 years Nicklas Nordborg Merged patch release 3.6.2 to the trunk
AbstractHqlQuery.java 12.5 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
AbstractQuery.java 25.3 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
AbstractResultList.java 3.6 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
AbstractSqlQuery.java 13.7 KB 7156   6 years Nicklas Nordborg References #2009: PostgreSQL seems to be loading entire result set …
AccessControlled.java 2.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AccountExpiredException.java 1.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AlreadyLoggedInException.java 1.3 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Annotatable.java 3.1 KB 5983   10 years Nicklas Nordborg References #1605: Inherit annotations from a child path Added support …
AnnotatableProxy.java 1.9 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AnnotatedItem.java 2.5 KB 7126   6 years Nicklas Nordborg References #2000: Batch API for annotation handling Adding a call to …
Annotation.java 24.7 KB 7205   6 years Nicklas Nordborg References #2033: Permissions for annotating items may be incorrectly …
AnnotationBatcher.java 34.6 KB 7189   6 years Nicklas Nordborg Merged patch release 3.9.1 to the trunk.
AnnotationBetweenRestriction.java 7.0 KB 6686   7 years Nicklas Nordborg References #1906: Display inherited annotations in list views …
AnnotationInRestriction.java 4.1 KB 6880   7 years Nicklas Nordborg Merge pre-3.5 changes to the trunk.
AnnotationRestriction.java 10.7 KB 6923   7 years Nicklas Nordborg References #1941: Store experimental factor values as part experiments …
AnnotationSet.java 42.0 KB 7211   6 years Nicklas Nordborg References #2034: New permission for annotating items Decoupled the …
AnnotationSimpleRestriction.java 12.0 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
AnnotationType.java 48.9 KB 7120   6 years Nicklas Nordborg References #2001: The annotation importer should only replace existing …
AnnotationTypeCategory.java 4.4 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
AnyToAny.java 21.0 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
Application.java 37.3 KB 7166   6 years Nicklas Nordborg References #2013: Add support for logging when items are viewed …
ArrayBatch.java 10.0 KB 7003   7 years Nicklas Nordborg References #1960 and #1958: Inherit annotations from Hardware, …
ArrayDesign.java 24.5 KB 7014   7 years Nicklas Nordborg Merged patch release 3.6.2 to the trunk
ArrayDesignBlock.java 11.1 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
ArrayDesignPlate.java 5.3 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
ArraySlide.java 9.9 KB 7002   7 years Nicklas Nordborg References #1961: Implementation of getAnnotatableParents() is flawed …
AuthenticationContext.java 4.2 KB 6429   8 years Nicklas Nordborg References #1599: Convert authentication plug-in system to an …
BaseException.java 2.7 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BasicBatcher.java 18.8 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
BasicChildItem.java 3.2 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
BasicItem.java 20.4 KB 7121   6 years Nicklas Nordborg References #2000: Batch API for annotation handling First version of …
BatchedPropertyInfo.java 1.5 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Batcher.java 2.6 KB 5818   11 years Nicklas Nordborg References #1590: Documentation cleanup Some more sections in the …
BatchUtil.java 16.2 KB 7075   6 years Nicklas Nordborg References #1979: Upgrade to Hibernate 5 Reintegrates changes made in …
BioAssay.java 13.8 KB 7126   6 years Nicklas Nordborg References #2000: Batch API for annotation handling Adding a call to …
BioAssaySet.java 51.8 KB 7126   6 years Nicklas Nordborg References #2000: Batch API for annotation handling Adding a call to …
BioMaterial.java 6.4 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
BioMaterialEvent.java 34.2 KB 6990   7 years Nicklas Nordborg References #1958: Add Kit item Added Kit item in the core layer and …
BioMaterialEventSource.java 6.0 KB 6600   8 years Nicklas Nordborg Merge BASE 3.3.3 to the trunk. There is a test failure in "TestFile?" …
BioPlate.java 16.6 KB 7003   7 years Nicklas Nordborg References #1960 and #1958: Inherit annotations from Hardware, …
BioPlateEvent.java 14.5 KB 6990   7 years Nicklas Nordborg References #1958: Add Kit item Added Kit item in the core layer and …
BioPlateEventParticipant.java 8.1 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
BioPlateEventType.java 7.9 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
BioPlateType.java 10.3 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
BioSource.java 5.9 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
BioWell.java 13.8 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
BlockInfo.java 3.8 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BooleanParameterType.java 2.4 KB 6372   8 years Nicklas Nordborg Merged patch release 3.2.4 to the trunk.
ChangeHistory.java 14.9 KB 7166   6 years Nicklas Nordborg References #2013: Add support for logging when items are viewed …
ChildItem.java 4.1 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
Client.java 9.9 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
ClientDefaultSetting.java 5.8 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
ClonableProperty.java 11.0 KB 7052   6 years Nicklas Nordborg Merge pre-3.7 changes to the the trunk.
ClonableReporterQuery.java 1.9 KB 5897   10 years Nicklas Nordborg References #1616: Clone reporter information to per-experiment tables …
Coloring.java 5.3 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
CommonItem.java 2.5 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
Config.java 10.2 KB 5595   11 years Nicklas Nordborg References #1592: Unified installation procedure for plug-ins, …
ConfigurationException.java 1.6 KB 5384   12 years Nicklas Nordborg References #1498: Investigate and fix issues found by FindBugs? Fixes …
ConnectionClosedException.java 1.2 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ContextKey.java 2.0 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
Controlled.java 1.3 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DatabaseException.java 1.9 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DataCube.java 19.7 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
DataCubeColumn.java 5.4 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
DataCubeExtraValue.java 7.1 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
DataCubeFilter.java 5.8 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
DataCubeLayer.java 5.7 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
DataFileType.java 18.1 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
DataQuery.java 3.5 KB 7014   7 years Nicklas Nordborg Merged patch release 3.6.2 to the trunk
DataResultIterator.java 3.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DateFormatException.java 1.4 KB 5430   12 years Nicklas Nordborg References #1512: Add support for datetime annotation types The …
DateParameterType.java 2.9 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DateUtil.java 6.2 KB 7189   6 years Nicklas Nordborg Merged patch release 3.9.1 to the trunk.
DbControl.java 39.3 KB 7166   6 years Nicklas Nordborg References #2013: Add support for logging when items are viewed …
DerivedBioAssay.java 30.3 KB 7082   6 years Nicklas Nordborg References #1148: Removing items from trashcan when circular …
DetachedItemException.java 1.4 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
Directory.java 25.4 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
DisallowedValueException.java 1.8 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
DiskConsumable.java 2.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DiskUsage.java 6.8 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
DiskUsageStatistics.java 8.5 KB 6619   7 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Fixed an issue with …
DoubleParameterType.java 4.7 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DropDynamicTableAction.java 1.9 KB 5877   11 years Nicklas Nordborg References #1616: Clone reporter information to per-experiment tables …
DynamicExtraValueQuery.java 2.8 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicJoin.java 8.1 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicPositionQuery.java 8.8 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicPositionQueryJoiners.java 6.1 KB 6026   10 years Nicklas Nordborg References #1673: Allow sorting table listings on single-valued …
DynamicQuery.java 5.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicRawDataQuery.java 9.4 KB 7151   6 years Nicklas Nordborg References #2004: Raw data query for multiple raw bioassays Added …
DynamicReporterQuery.java 8.2 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicRestriction.java 3.6 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicResultIterator.java 5.0 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
DynamicSpotQuery.java 11.8 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
DynamicSpotQueryJoiners.java 7.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Experiment.java 28.2 KB 6958   7 years Nicklas Nordborg References #1941: Store experimental factor values as part experiments …
ExtendedProperties.java 9.5 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
ExtendedProperty.java 8.6 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
ExtendedPropertyAccessor.java 5.9 KB 7150   6 years Nicklas Nordborg Merge pre-3.8 changes to the trunk.
ExtendedPropertyLinker.java 2.1 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
Extract.java 10.2 KB 7003   7 years Nicklas Nordborg References #1960 and #1958: Inherit annotations from Hardware, …
ExtraValue.java 17.0 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
ExtraValueExpression.java 3.2 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ExtraValueJoin.java 7.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ExtraValueType.java 11.1 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
Feature.java 3.2 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
FeatureBatcher.java 10.1 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
FeatureCoordinate.java 3.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
FeatureIdentificationMethod.java 5.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
File.java 50.6 KB 7152   6 years Nicklas Nordborg Fixes #2006: Use parallel gzip implementation when compressing files
FileAttachable.java 1.7 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
FileParameterType.java 2.3 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
FileServer.java 18.9 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
FileSet.java 24.2 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
FileSetMember.java 7.1 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
FileStoreEnabled.java 2.5 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
FileStoreUtil.java 12.0 KB 5764   11 years Nicklas Nordborg Fixes #1624: Create array design (feature) importer for GTF files * …
filter-def.hbm.xml 5.9 KB 7075   6 years Nicklas Nordborg References #1979: Upgrade to Hibernate 5 Reintegrates changes made in …
FilterBatcher.java 10.5 KB 6469   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Replaced calls to …
FloatParameterType.java 4.1 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Formula.java 24.9 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
GlobalDefaultSetting.java 3.5 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
Group.java 20.1 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
GroupPermissions.java 6.7 KB 5368   12 years Nicklas Nordborg References #1459: Named permissions keys that store predefined …
Hardware.java 11.5 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
HasAnnotationRestriction.java 4.1 KB 6686   7 years Nicklas Nordborg References #1906: Display inherited annotations in list views …
Help.java 6.9 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
HibernateUtil.java 70.0 KB 7156   6 years Nicklas Nordborg References #2009: PostgreSQL seems to be loading entire result set …
HqlQueryJoiners.java 5.2 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Identifiable.java 1.9 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Include.java 2.6 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Install.java 112.3 KB 7198   6 years Nicklas Nordborg References #2029: Projects should be annotatable Fixed in the data …
IntegerParameterType.java 4.1 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
IntegerUtil.java 4.0 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
IntensityFormula.java 2.4 KB 5384   12 years Nicklas Nordborg References #1498: Investigate and fix issues found by FindBugs? Fixes …
IntensityTransform.java 7.2 KB 6880   7 years Nicklas Nordborg Merge pre-3.5 changes to the trunk.
InternalJobQueue.java 18.9 KB 7015   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
InternalStorageController.java 10.3 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
InvalidAnnotationException.java 1.8 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
InvalidDataException.java 1.9 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
InvalidPasswordException.java 1.7 KB 5822   11 years Nicklas Nordborg References #1575: Add support for authenticator plug-in in external …
InvalidPathException.java 1.3 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
InvalidRelationException.java 2.1 KB 5623   11 years Nicklas Nordborg References #1598: Use the extensions system for data file validators …
InvalidUseOfNullException.java 1.5 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Item.java 28.8 KB 6990   7 years Nicklas Nordborg References #1958: Add Kit item Added Kit item in the core layer and …
ItemAlreadyExistsException.java 1.4 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
ItemContext.java 61.8 KB 7116   6 years Nicklas Nordborg Fixes #1996: Filtering on the "Permission" column don't display the …
ItemInUseException.java 2.0 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemKey.java 16.6 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
ItemList.java 42.9 KB 6928   7 years Nicklas Nordborg References #1948: Automatic re-sync of item lists used in …
ItemModifiedException.java 2.6 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemNotFoundException.java 1.8 KB 5822   11 years Nicklas Nordborg References #1575: Add support for authenticator plug-in in external …
ItemParameterType.java 2.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ItemProxy.java 2.3 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ItemQuery.java 3.9 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemResultIterator.java 3.1 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ItemResultList.java 7.4 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
ItemSubtype.java 22.0 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
ItemSubtypeFileType.java 5.5 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
Job.java 71.3 KB 7189   6 years Nicklas Nordborg Merged patch release 3.9.1 to the trunk.
JobAgent.java 17.4 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
JobAgentSettings.java 10.1 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
Key.java 1.1 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
Keyring.java 27.3 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
Kit.java 10.6 KB 7052   6 years Nicklas Nordborg Merge pre-3.7 changes to the the trunk.
Listable.java 975 bytes 6740   7 years Nicklas Nordborg References #1325: Lists of items (similar funcion as biomaterial …
Location.java 3.7 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
LogControl.java 5.4 KB 7189   6 years Nicklas Nordborg Merged patch release 3.9.1 to the trunk.
LoginException.java 1.6 KB 5822   11 years Nicklas Nordborg References #1575: Add support for authenticator plug-in in external …
LogUtil.java 1.7 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
LongParameterType.java 4.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
MappingBatcher.java 8.9 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
MeanRawDataPropertyExpression.java 3.5 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
MeasuredBioMaterial.java 20.4 KB 7082   6 years Nicklas Nordborg References #1148: Removing items from trashcan when circular …
Message.java 12.3 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
Metadata.java 24.7 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
Migration.java 31.5 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
MimeType.java 10.1 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
MultiPermissions.java 18.1 KB 7189   6 years Nicklas Nordborg Merged patch release 3.9.1 to the trunk.
Nameable.java 3.7 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
NameableUtil.java 2.0 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
News.java 9.0 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
NotLoggedInException.java 1.2 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
NumberOutOfRangeException.java 4.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Operator.java 10.8 KB 6830   7 years Nicklas Nordborg References #1932: Improve display of selection list in table filters …
Ownable.java 2.6 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
OwnableUtil.java 1.5 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
OwnedItem.java 3.8 KB 7189   6 years Nicklas Nordborg Merged patch release 3.9.1 to the trunk.
package.html 878 bytes 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ParameterException.java 1.3 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ParameterInfo.java 2.6 KB 6988   7 years Nicklas Nordborg Fixes #1959: Add support for password-type parameters to plug-ins …
ParameterType.java 9.5 KB 6987   7 years Nicklas Nordborg References #1959: Add support for password-type parameters to plug-ins …
ParameterValuesImpl.java 7.0 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
PasswordParameterType.java 2.3 KB 6987   7 years Nicklas Nordborg References #1959: Add support for password-type parameters to plug-ins …
Path.java 8.6 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
PathParameterType.java 3.2 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Permission.java 8.0 KB 7211   6 years Nicklas Nordborg References #2034: New permission for annotating items Decoupled the …
PermissionDeniedException.java 2.8 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PermissionTemplate.java 5.0 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
PhysicalBioAssay.java 14.4 KB 7003   7 years Nicklas Nordborg References #1960 and #1958: Inherit annotations from Hardware, …
Plate.java 15.7 KB 7014   7 years Nicklas Nordborg Merged patch release 3.6.2 to the trunk
PlateEvent.java 11.1 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
PlateEventType.java 10.4 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
PlateGeometry.java 10.0 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
PlateMapping.java 16.8 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
PlateType.java 7.1 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
Platform.java 16.1 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
PlatformFileType.java 7.7 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
PlatformVariant.java 13.7 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
PluginConfiguration.java 26.4 KB 7120   6 years Nicklas Nordborg References #2001: The annotation importer should only replace existing …
PluginConfigurationRequest.java 5.2 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
PluginDefinition.java 45.6 KB 7015   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
PluginExecutionRequest.java 5.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
PluginParameter.java 5.0 KB 5218   12 years Jari Häkkinen Removed double 'the the' typos.
PluginPermission.java 1.0 KB 4669   13 years Nicklas Nordborg Merged 2.9-stable@4643:4666 to trunk.
PluginRequest.java 9.7 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
PluginResponse.java 9.3 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
PluginSessionControl.java 3.0 KB 6437   8 years Nicklas Nordborg References #1599: Convert authentication plug-in system to an …
PluginType.java 10.6 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
PositionBatcher.java 8.5 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
PositionExtraValueBatcher.java 11.9 KB 6469   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Replaced calls to …
PredefinedQuery.java 4.8 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
Presets.java 8.1 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
ProgressReporter.java 1.4 KB 5325   12 years Nicklas Nordborg References #1485: File items should be able to reference external …
Project.java 38.5 KB 7198   6 years Nicklas Nordborg References #2029: Projects should be annotatable Fixed in the data …
ProjectKey.java 11.8 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
ProjectPermissions.java 7.5 KB 5368   12 years Nicklas Nordborg References #1459: Named permissions keys that store predefined …
PropertyFilter.java 35.8 KB 7105   6 years Nicklas Nordborg Fixes #1991: Add support for filtering index property values …
Protocol.java 17.3 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
Quantity.java 16.4 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
QueryExecutor.java 10.0 KB 7075   6 years Nicklas Nordborg References #1979: Upgrade to Hibernate 5 Reintegrates changes made in …
QueryRuntimeFilter.java 2.5 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
QueryRuntimeFilterFactory.java 15.9 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
QueryRuntimeFilterManager.java 2.8 KB 6934   7 years Nicklas Nordborg References #1950: Add support for any-to-any link filters in table …
Quota.java 13.6 KB 7155   6 years Nicklas Nordborg Fixes #2008: It is not possible to change quota values
QuotaException.java 2.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
QuotaType.java 5.4 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
RawBioAssay.java 41.3 KB 7014   7 years Nicklas Nordborg Merged patch release 3.6.2 to the trunk
RawBioAssayPropertyExpression.java 4.5 KB 7151   6 years Nicklas Nordborg References #2004: Raw data query for multiple raw bioassays Added …
RawDataBatcher.java 21.8 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
RawDataProperty.java 1.7 KB 6428   8 years Nicklas Nordborg References #1599: Convert authentication plug-in system to an …
RawDataPropertyExpression.java 5.2 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
RawDataType.java 9.8 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
RawDataTypes.java 16.8 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
RawDataUtil.java 2.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
RealJoin.java 6.6 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
RealTable.java 2.8 KB 7151   6 years Nicklas Nordborg References #2004: Raw data query for multiple raw bioassays Added …
Registered.java 1.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Removable.java 2.7 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
Reporter.java 12.0 KB 7014   7 years Nicklas Nordborg Merged patch release 3.6.2 to the trunk
ReporterBatcher.java 8.7 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ReporterCloneBatcher.java 12.9 KB 6908   7 years Nicklas Nordborg References #1942: Store experimental factor values as part experiments …
ReporterCloneTemplate.java 11.1 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
ReporterList.java 21.8 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
ReporterListJoin.java 6.8 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ReporterPropertyExpression.java 6.3 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
ReporterScore.java 2.4 KB 7014   7 years Nicklas Nordborg Merged patch release 3.6.2 to the trunk
ReporterScoreQuery.java 2.3 KB 7014   7 years Nicklas Nordborg Merged patch release 3.6.2 to the trunk
ReporterScoreResultIterator.java 3.0 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ReporterType.java 7.2 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
RequestInformation.java 4.9 KB 4962   13 years Nicklas Nordborg Fixes #1329: A plug-in should be able to use a JSP page from an …
Role.java 11.8 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
RoleKey.java 7.7 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
RootRawBioAssay.java 7.2 KB 7126   6 years Nicklas Nordborg References #2000: Batch API for annotation handling Adding a call to …
Sample.java 8.7 KB 6993   7 years Nicklas Nordborg References #1958: Add Kit item Kits can now be selected for samples …
ScrollIterator.java 2.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
SecondaryStorageController.java 3.1 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
ServiceSessionControl.java 20.6 KB 7150   6 years Nicklas Nordborg Merge pre-3.8 changes to the trunk.
ServicesUtil.java 1.9 KB 6630   7 years Nicklas Nordborg References #1892: Implement support for extensions to add their own …
Session.java 5.7 KB 7165   6 years Nicklas Nordborg Fixes #2015: Store authentication method in the session log Database …
SessionControl.java 73.3 KB 7189   6 years Nicklas Nordborg Merged patch release 3.9.1 to the trunk.
Setting.java 4.5 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
Shareable.java 3.6 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ShareableUtil.java 9.9 KB 5590   11 years Nicklas Nordborg References #1589: Delete deprecated classes and methods Removed …
SharedItem.java 3.8 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
SimpleAbsoluteProgressReporter.java 2.6 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
SimpleProgressReporter.java 2.6 KB 6795   7 years Nicklas Nordborg References #1325: Lists of items Displaying a progress bar when …
Software.java 8.6 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
SpecialQuery.java 2.5 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
SpotBatcher.java 11.2 KB 6469   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Replaced calls to …
SpotExtraValueBatcher.java 11.6 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
SpotImage.java 1.8 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
SpotImages.java 31.2 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
StringParameterType.java 4.4 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
StringTooLongException.java 1.8 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
StringUtil.java 8.6 KB 6022   10 years Nicklas Nordborg Fixes #1672: Join annotation values into a main item query There is …
Subtypable.java 1.3 KB 5631   11 years Nicklas Nordborg References #1597: Subtypes of items Added support for subtypes with …
SubtypableRelatedItems.java 1.5 KB 5823   11 years Nicklas Nordborg References #1590: Documentation cleanup Fixed javadoc warnings.
SupportsPushAnnotations.java 1.6 KB 5983   10 years Nicklas Nordborg References #1605: Inherit annotations from a child path Added support …
SyncFilter.java 14.9 KB 6927   7 years Nicklas Nordborg References #1948: Automatic re-sync of item lists used in …
SystemItem.java 2.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
SystemItems.java 4.7 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
Tag.java 5.2 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
TimestampParameterType.java 2.8 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Transactional.java 2.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
TransactionalAction.java 1.6 KB 5877   11 years Nicklas Nordborg References #1616: Clone reporter information to per-experiment tables …
Transformation.java 16.3 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
Trashcan.java 16.1 KB 7082   6 years Nicklas Nordborg References #1148: Removing items from trashcan when circular …
Type.java 19.0 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
Unit.java 19.7 KB 7016   7 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
UnmodifiableResultList.java 3.4 KB 6127   10 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
UnsavedItemException.java 2.0 KB 4517   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
UnsupportedFileFormatException.java 2.0 KB 4594   14 years Nicklas Nordborg Fixes #1145: Make the generic raw data importer support batch import
Update.java 73.4 KB 7198   6 years Nicklas Nordborg References #2029: Projects should be annotatable Fixed in the data …
UsableDataFileType.java 1.4 KB 5713   11 years Nicklas Nordborg References #1604: Support for multiple files of the same type in a …
User.java 41.8 KB 7211   6 years Nicklas Nordborg References #2034: New permission for annotating items Decoupled the …
UserClientSetting.java 8.2 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
UserDefaultSetting.java 6.2 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
UserPermissions.java 6.7 KB 5368   12 years Nicklas Nordborg References #1459: Named permissions keys that store predefined …
Validatable.java 1.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Values.java 4.1 KB 5384   12 years Nicklas Nordborg References #1498: Investigate and fix issues found by FindBugs? Fixes …
Version.java 4.6 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
VirtualColumn.java 12.3 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
VirtualDb.java 14.1 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
VirtualTable.java 12.3 KB 5888   10 years Nicklas Nordborg References #1630: Migrate from MySQL to PostgreSQL Implemented some …
Well.java 10.6 KB 7126   6 years Nicklas Nordborg References #2000: Batch API for annotation handling Adding a call to …
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