source: trunk/src/core/net/sf/basedb/core @ 7856

Name Size Rev Age Author Last Change
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authentication 7703   3 years Nicklas Nordborg Merged pre-3.15 changes to the trunk.
data 7856   15 months Nicklas Nordborg References #2224: Files should be annotatable Core- and data-layer …
dbengine 7519   3 years Nicklas Nordborg References #2130: Upgrade 3-rd party libraries Updates to make sure …
doc-files 1538   16 years Nicklas Nordborg Implemented delete operation for BioAssaySet?, Transformation and VirtualDb?
dtd 7496   4 years Nicklas Nordborg References #2125: Add support for hidden extended properties It is …
hibernate 7750   2 years Nicklas Nordborg References #2185: Upgrade to Hibernate 5.4.x Updated Hibernate to …
log 7832   19 months Nicklas Nordborg Merge BASE 3.16.2 to the trunk.
migrate 5896   10 years Nicklas Nordborg References #1630: Migrate from MySQL to PostgreSQL Refactored …
plugin 7714   3 years Nicklas Nordborg Fixes #2180: Replace "UTF-8" with StandardCharsets?.UTF_8
query 7813   20 months Nicklas Nordborg Merge BASE 3.16.1 to the trunk.
signal 7732   3 years Nicklas Nordborg References #2139: Switch to Java 11 (or later) Changed some …
snapshot 7767   2 years Nicklas Nordborg References #2202: Include information from parent items in list pages …
templates 7075   6 years Nicklas Nordborg References #1979: Upgrade to Hibernate 5 Reintegrates changes made in …
xsd 7075   6 years Nicklas Nordborg References #1979: Upgrade to Hibernate 5 Reintegrates changes made in …
AbsoluteProgressReporter.java 1.5 KB 4517   13 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
AbstractBatcher.java 5.6 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
AbstractEntityQuery.java 9.3 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
AbstractHqlQuery.java 12.7 KB 7461   4 years Nicklas Nordborg Merge pre-3.12 changes to the trunk.
AbstractQuery.java 25.3 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
AbstractResultList.java 3.6 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
AbstractSqlQuery.java 14.3 KB 7433   4 years Nicklas Nordborg Fixes #2103: Can't filter on "Up to date" column for cloned reporters …
AccessControlled.java 2.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AccountExpiredException.java 1.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AlreadyLoggedInException.java 1.3 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Annotatable.java 3.1 KB 5983   10 years Nicklas Nordborg References #1605: Inherit annotations from a child path Added support …
AnnotatableProxy.java 1.9 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
AnnotatedItem.java 2.5 KB 7126   6 years Nicklas Nordborg References #2000: Batch API for annotation handling Adding a call to …
Annotation.java 29.8 KB 7643   3 years Nicklas Nordborg References #2137: Remove some of the deprecated code Removed things …
AnnotationBatcher.java 39.5 KB 7522   3 years Nicklas Nordborg References #2130: Upgrade 3-rd party libraries Updated to Hibernate …
AnnotationBetweenRestriction.java 6.3 KB 7643   3 years Nicklas Nordborg References #2137: Remove some of the deprecated code Removed things …
AnnotationInRestriction.java 4.0 KB 7643   3 years Nicklas Nordborg References #2137: Remove some of the deprecated code Removed things …
AnnotationRestriction.java 12.3 KB 7643   3 years Nicklas Nordborg References #2137: Remove some of the deprecated code Removed things …
AnnotationSet.java 42.0 KB 7703   3 years Nicklas Nordborg Merged pre-3.15 changes to the trunk.
AnnotationSimpleRestriction.java 11.2 KB 7643   3 years Nicklas Nordborg References #2137: Remove some of the deprecated code Removed things …
AnnotationType.java 52.1 KB 7738   2 years Nicklas Nordborg Merge 3.15.1 to the trunk.
AnnotationTypeCategory.java 4.7 KB 7308   5 years Nicklas Nordborg Fixes #2061: Add API for setting registration date on items Added …
AnyToAny.java 23.4 KB 7853   15 months Nicklas Nordborg References #2222: Add support for manually adding any-to-any link …
Application.java 34.6 KB 7715   3 years Nicklas Nordborg References #2139: Switch to Java 11 (or later) Removed the …
ArrayBatch.java 10.3 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
ArrayDesign.java 24.9 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
ArrayDesignBlock.java 11.1 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
ArrayDesignPlate.java 5.3 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
ArraySlide.java 10.2 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
AuthenticationContext.java 4.3 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
BaseException.java 2.7 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BasicBatcher.java 18.8 KB 6468   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Updated to Hibernate …
BasicChildItem.java 3.2 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
BasicItem.java 20.8 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
BatchedPropertyInfo.java 1.5 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Batcher.java 2.7 KB 7551   3 years Nicklas Nordborg References #2129: Preparations for Java 11 support Added the …
BatchUtil.java 16.2 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
BioAssay.java 13.8 KB 7126   6 years Nicklas Nordborg References #2000: Batch API for annotation handling Adding a call to …
BioAssaySet.java 52.4 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
BioMaterial.java 6.4 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
BioMaterialEvent.java 34.4 KB 7605   3 years Nicklas Nordborg References #2151: Pre-compile all JSP pages before releases Getting …
BioMaterialEventSource.java 6.0 KB 6600   7 years Nicklas Nordborg Merge BASE 3.3.3 to the trunk. There is a test failure in "TestFile?" …
BioPlate.java 17.1 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
BioPlateEvent.java 14.8 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
BioPlateEventParticipant.java 8.2 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
BioPlateEventType.java 8.0 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
BioPlateType.java 10.4 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
BioSource.java 6.3 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
BioWell.java 13.8 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
BlockInfo.java 3.8 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
BooleanParameterType.java 2.4 KB 6372   8 years Nicklas Nordborg Merged patch release 3.2.4 to the trunk.
ChangeHistory.java 14.9 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
ChildItem.java 4.1 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
Client.java 10.8 KB 7403   4 years Nicklas Nordborg References #2097: Implement support for device verification Added a …
ClientDefaultSetting.java 5.8 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
ClonableProperty.java 11.0 KB 7496   4 years Nicklas Nordborg References #2125: Add support for hidden extended properties It is …
ClonableReporterQuery.java 1.9 KB 5897   10 years Nicklas Nordborg References #1616: Clone reporter information to per-experiment tables …
Coloring.java 5.3 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
CommonItem.java 2.5 KB 7016   6 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
Config.java 10.2 KB 7527   3 years Nicklas Nordborg References #2130: Upgrade 3-rd party libraries Updated Apache Commons …
ConfigurationException.java 1.6 KB 5384   11 years Nicklas Nordborg References #1498: Investigate and fix issues found by FindBugs? Fixes …
ConnectionClosedException.java 1.2 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ContextKey.java 2.0 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
Controlled.java 1.3 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DatabaseException.java 1.9 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DataCube.java 20.2 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
DataCubeColumn.java 5.4 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
DataCubeExtraValue.java 7.1 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
DataCubeFilter.java 5.8 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
DataCubeLayer.java 5.7 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
DataFileType.java 19.0 KB 7605   3 years Nicklas Nordborg References #2151: Pre-compile all JSP pages before releases Getting …
DataQuery.java 3.5 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
DataResultIterator.java 3.5 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DateFormatException.java 1.4 KB 5430   11 years Nicklas Nordborg References #1512: Add support for datetime annotation types The …
DateParameterType.java 2.9 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DateUtil.java 6.4 KB 7514   3 years Nicklas Nordborg References #2129: Preparations for Java 11 support Get rid of …
DbControl.java 41.2 KB 7715   3 years Nicklas Nordborg References #2139: Switch to Java 11 (or later) Removed the …
DerivedBioAssay.java 30.2 KB 7642   3 years Nicklas Nordborg References #2137: Remove some of the deprecated code Removed things …
DetachedItemException.java 1.4 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
DeviceNotVerifiedException.java 1.9 KB 7408   4 years Nicklas Nordborg References #2097: Implement support for device verification The major …
Directory.java 26.0 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
DisallowedValueException.java 1.8 KB 4517   13 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
DiskConsumable.java 2.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
DiskUsage.java 6.9 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
DiskUsageStatistics.java 8.7 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
DoubleParameterType.java 4.7 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DropDynamicTableAction.java 1.9 KB 5877   10 years Nicklas Nordborg References #1616: Clone reporter information to per-experiment tables …
DynamicExtraValueQuery.java 2.8 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicJoin.java 8.1 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicPositionQuery.java 8.8 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicPositionQueryJoiners.java 6.1 KB 6026   10 years Nicklas Nordborg References #1673: Allow sorting table listings on single-valued …
DynamicQuery.java 4.7 KB 7433   4 years Nicklas Nordborg Fixes #2103: Can't filter on "Up to date" column for cloned reporters …
DynamicRawDataQuery.java 9.7 KB 7433   4 years Nicklas Nordborg Fixes #2103: Can't filter on "Up to date" column for cloned reporters …
DynamicReporterQuery.java 9.3 KB 7433   4 years Nicklas Nordborg Fixes #2103: Can't filter on "Up to date" column for cloned reporters …
DynamicRestriction.java 3.6 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
DynamicResultIterator.java 5.0 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
DynamicSpotQuery.java 11.8 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
DynamicSpotQueryJoiners.java 7.5 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Experiment.java 28.5 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
ExtendedProperties.java 11.0 KB 7496   4 years Nicklas Nordborg References #2125: Add support for hidden extended properties It is …
ExtendedProperty.java 8.9 KB 7496   4 years Nicklas Nordborg References #2125: Add support for hidden extended properties It is …
ExtendedPropertyAccessor.java 6.0 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
ExtendedPropertyLinker.java 1.9 KB 7714   3 years Nicklas Nordborg Fixes #2180: Replace "UTF-8" with StandardCharsets?.UTF_8
Extract.java 11.4 KB 7587   3 years Nicklas Nordborg Merged patch release 3.14.1 to the trunk.
ExtraValue.java 17.0 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
ExtraValueExpression.java 3.2 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ExtraValueJoin.java 7.0 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ExtraValueType.java 11.5 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
Feature.java 3.2 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
FeatureBatcher.java 10.1 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
FeatureCoordinate.java 3.5 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
FeatureIdentificationMethod.java 5.5 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
File.java 52.3 KB 7856   15 months Nicklas Nordborg References #2224: Files should be annotatable Core- and data-layer …
FileAttachable.java 1.7 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
FileParameterType.java 2.3 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
FileServer.java 24.3 KB 7472   4 years Nicklas Nordborg References #2112: Add support for SSH private keys to file server …
FileSet.java 24.3 KB 7605   3 years Nicklas Nordborg References #2151: Pre-compile all JSP pages before releases Getting …
FileSetMember.java 7.1 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
FileStoreEnabled.java 2.5 KB 4517   13 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
FileStoreUtil.java 12.2 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
filter-def.hbm.xml 5.9 KB 7075   6 years Nicklas Nordborg References #1979: Upgrade to Hibernate 5 Reintegrates changes made in …
FilterBatcher.java 10.5 KB 6469   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Replaced calls to …
FloatParameterType.java 4.1 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Formula.java 25.2 KB 7308   5 years Nicklas Nordborg Fixes #2061: Add API for setting registration date on items Added …
GlobalDefaultSetting.java 3.5 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
Group.java 20.5 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
GroupPermissions.java 6.7 KB 5368   12 years Nicklas Nordborg References #1459: Named permissions keys that store predefined …
Hardware.java 12.2 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
HasAnnotationRestriction.java 4.5 KB 7643   3 years Nicklas Nordborg References #2137: Remove some of the deprecated code Removed things …
Help.java 6.9 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
HibernateUtil.java 77.5 KB 7853   15 months Nicklas Nordborg References #2222: Add support for manually adding any-to-any link …
HqlQueryJoiners.java 5.2 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Identifiable.java 1.9 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Include.java 2.6 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Install.java 114.0 KB 7856   15 months Nicklas Nordborg References #2224: Files should be annotatable Core- and data-layer …
IntegerParameterType.java 4.1 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
IntegerUtil.java 4.0 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
IntensityFormula.java 2.4 KB 5384   11 years Nicklas Nordborg References #1498: Investigate and fix issues found by FindBugs? Fixes …
IntensityTransform.java 7.2 KB 6880   7 years Nicklas Nordborg Merge pre-3.5 changes to the trunk.
InternalJobQueue.java 19.1 KB 7513   3 years Nicklas Nordborg References #2129: Preparations for Java 11 support Get rid of …
InvalidAnnotationException.java 1.8 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
InvalidDataException.java 1.9 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
InvalidPasswordException.java 1.7 KB 5822   10 years Nicklas Nordborg References #1575: Add support for authenticator plug-in in external …
InvalidPathException.java 1.3 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
InvalidRelationException.java 2.1 KB 5623   11 years Nicklas Nordborg References #1598: Use the extensions system for data file validators …
InvalidUseOfNullException.java 1.5 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Item.java 29.8 KB 7638   3 years Nicklas Nordborg References #2136: Remove support for spot images Removed things …
ItemAlreadyExistsException.java 1.4 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
ItemContext.java 65.3 KB 7813   20 months Nicklas Nordborg Merge BASE 3.16.1 to the trunk.
ItemInUseException.java 2.0 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemKey.java 16.9 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
ItemList.java 47.8 KB 7833   19 months Nicklas Nordborg References #2216: Improve API for adding and removing items to an item …
ItemModifiedException.java 2.6 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ItemNotFoundException.java 1.8 KB 5822   10 years Nicklas Nordborg References #1575: Add support for authenticator plug-in in external …
ItemParameterType.java 2.4 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ItemProxy.java 2.3 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ItemQuery.java 3.8 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
ItemResultIterator.java 3.1 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ItemResultList.java 7.4 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
ItemSubtype.java 22.5 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
ItemSubtypeFileType.java 6.1 KB 7311   5 years Nicklas Nordborg Fixes #2066: Display item subtypes that are referencing a data file …
Job.java 76.8 KB 7738   2 years Nicklas Nordborg Merge 3.15.1 to the trunk.
JobAgent.java 17.5 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
JobAgentSettings.java 10.1 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
Key.java 1.1 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
Keyring.java 28.7 KB 7738   2 years Nicklas Nordborg Merge 3.15.1 to the trunk.
Kit.java 11.3 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
Listable.java 975 bytes 6740   7 years Nicklas Nordborg References #1325: Lists of items (similar funcion as biomaterial …
Location.java 3.6 KB 7595   3 years Nicklas Nordborg References #2135: Remove support for secondary storage Removed …
LogControl.java 6.0 KB 7522   3 years Nicklas Nordborg References #2130: Upgrade 3-rd party libraries Updated to Hibernate …
LoginException.java 1.6 KB 5822   10 years Nicklas Nordborg References #1575: Add support for authenticator plug-in in external …
LogUtil.java 1.7 KB 6444   8 years Nicklas Nordborg Fixes #1801: Switch to slf4j
LongParameterType.java 4.0 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
MappingBatcher.java 8.9 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
MeanRawDataPropertyExpression.java 3.5 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
MeasuredBioMaterial.java 21.1 KB 7390   5 years Nicklas Nordborg Merge patch release 3.11.1 to the trunk.
Message.java 12.6 KB 7738   2 years Nicklas Nordborg Merge 3.15.1 to the trunk.
Metadata.java 25.0 KB 7849   16 months Nicklas Nordborg References #2223: Implement batch importer for any-to-any links First …
Migration.java 31.7 KB 7714   3 years Nicklas Nordborg Fixes #2180: Replace "UTF-8" with StandardCharsets?.UTF_8
MimeType.java 10.5 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
MultiPermissions.java 18.5 KB 7212   5 years Nicklas Nordborg References #2034: New permission for annotating items The "Share" …
Nameable.java 3.7 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
NameableUtil.java 2.0 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
News.java 9.9 KB 7392   5 years Nicklas Nordborg References #2085: Sticky news Added sticky flag to news items in the …
NotLoggedInException.java 1.2 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
NumberOutOfRangeException.java 4.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Operator.java 10.8 KB 6830   7 years Nicklas Nordborg References #1932: Improve display of selection list in table filters …
Ownable.java 2.6 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
OwnableUtil.java 1.5 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
OwnedItem.java 3.8 KB 7189   5 years Nicklas Nordborg Merged patch release 3.9.1 to the trunk.
package.html 878 bytes 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ParameterException.java 1.3 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ParameterInfo.java 2.6 KB 6988   6 years Nicklas Nordborg Fixes #1959: Add support for password-type parameters to plug-ins …
ParameterType.java 9.4 KB 7786   23 months Nicklas Nordborg Merged patch release 3.15.3 to the trunk.
ParameterValuesImpl.java 7.1 KB 7605   3 years Nicklas Nordborg References #2151: Pre-compile all JSP pages before releases Getting …
PasswordParameterType.java 2.3 KB 6987   6 years Nicklas Nordborg References #1959: Add support for password-type parameters to plug-ins …
Path.java 8.5 KB 7794   23 months Nicklas Nordborg Merge pre-3.16 changes to the trunk.
PathParameterType.java 3.2 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Permission.java 8.0 KB 7211   5 years Nicklas Nordborg References #2034: New permission for annotating items Decoupled the …
PermissionDeniedException.java 2.8 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
PermissionTemplate.java 5.1 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
PhysicalBioAssay.java 14.5 KB 7605   3 years Nicklas Nordborg References #2151: Pre-compile all JSP pages before releases Getting …
Plate.java 16.1 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
PlateEvent.java 11.3 KB 7308   5 years Nicklas Nordborg Fixes #2061: Add API for setting registration date on items Added …
PlateEventType.java 10.5 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
PlateGeometry.java 10.4 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
PlateMapping.java 17.2 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
PlateType.java 7.4 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
Platform.java 16.4 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
PlatformFileType.java 7.7 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
PlatformVariant.java 13.9 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
PluginConfiguration.java 26.6 KB 7513   3 years Nicklas Nordborg References #2129: Preparations for Java 11 support Get rid of …
PluginConfigurationRequest.java 5.2 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
PluginDefinition.java 46.4 KB 7513   3 years Nicklas Nordborg References #2129: Preparations for Java 11 support Get rid of …
PluginExecutionRequest.java 5.4 KB 7329   5 years Nicklas Nordborg References #2072: Add support for pausing and resuming a job A paused …
PluginParameter.java 5.0 KB 5218   12 years Jari Häkkinen Removed double 'the the' typos.
PluginPermission.java 1.0 KB 4669   13 years Nicklas Nordborg Merged 2.9-stable@4643:4666 to trunk.
PluginRequest.java 10.1 KB 7605   3 years Nicklas Nordborg References #2151: Pre-compile all JSP pages before releases Getting …
PluginResponse.java 10.3 KB 7329   5 years Nicklas Nordborg References #2072: Add support for pausing and resuming a job A paused …
PluginSessionControl.java 2.7 KB 7669   3 years Nicklas Nordborg Fixes #2167: Permission denied when plug-in is trying to clone a session
PluginType.java 10.8 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
PositionBatcher.java 8.5 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
PositionExtraValueBatcher.java 11.9 KB 6469   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Replaced calls to …
PredefinedQuery.java 4.8 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
Presets.java 8.1 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
ProgressReporter.java 1.4 KB 5325   12 years Nicklas Nordborg References #1485: File items should be able to reference external …
Project.java 38.9 KB 7605   3 years Nicklas Nordborg References #2151: Pre-compile all JSP pages before releases Getting …
ProjectKey.java 12.0 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
ProjectPermissions.java 7.5 KB 5368   12 years Nicklas Nordborg References #1459: Named permissions keys that store predefined …
ProjectSpecificAnnotationsManager.java 16.2 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
PropertyFilter.java 39.7 KB 7843   17 months Nicklas Nordborg References #2218: Add support for adding "Child item" columns to list …
Protocol.java 18.0 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
Quantity.java 16.9 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
QueryExecutor.java 9.8 KB 7461   4 years Nicklas Nordborg Merge pre-3.12 changes to the trunk.
QueryRuntimeFilter.java 2.5 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
QueryRuntimeFilterFactory.java 15.9 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
QueryRuntimeFilterManager.java 2.8 KB 6934   7 years Nicklas Nordborg References #1950: Add support for any-to-any link filters in table …
Quota.java 13.7 KB 7595   3 years Nicklas Nordborg References #2135: Remove support for secondary storage Removed …
QuotaException.java 2.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
QuotaType.java 5.4 KB 7597   3 years Nicklas Nordborg References #2135: Remove support for secondary storage Removed …
RawBioAssay.java 41.2 KB 7638   3 years Nicklas Nordborg References #2136: Remove support for spot images Removed things …
RawBioAssayPropertyExpression.java 4.5 KB 7151   6 years Nicklas Nordborg References #2004: Raw data query for multiple raw bioassays Added …
RawDataBatcher.java 22.0 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
RawDataProperty.java 1.7 KB 7496   4 years Nicklas Nordborg References #2125: Add support for hidden extended properties It is …
RawDataPropertyExpression.java 5.2 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
RawDataType.java 9.8 KB 6465   8 years Nicklas Nordborg Fixes #1798: Remove web services support
RawDataTypes.java 17.0 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
RawDataUtil.java 2.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
RealJoin.java 6.6 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
RealTable.java 2.8 KB 7151   6 years Nicklas Nordborg References #2004: Raw data query for multiple raw bioassays Added …
Registered.java 1.7 KB 7308   5 years Nicklas Nordborg Fixes #2061: Add API for setting registration date on items Added …
Removable.java 2.7 KB 7016   6 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
Reporter.java 12.1 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
ReporterBatcher.java 8.9 KB 7496   4 years Nicklas Nordborg References #2125: Add support for hidden extended properties It is …
ReporterCloneBatcher.java 12.9 KB 6908   7 years Nicklas Nordborg References #1942: Store experimental factor values as part experiments …
ReporterCloneTemplate.java 11.5 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
ReporterList.java 22.0 KB 7527   3 years Nicklas Nordborg References #2130: Upgrade 3-rd party libraries Updated Apache Commons …
ReporterListJoin.java 6.8 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ReporterPropertyExpression.java 6.3 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
ReporterScore.java 2.4 KB 7014   6 years Nicklas Nordborg Merged patch release 3.6.2 to the trunk
ReporterScoreQuery.java 2.3 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
ReporterScoreResultIterator.java 3.0 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
ReporterType.java 7.6 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
RequestInformation.java 4.9 KB 4962   13 years Nicklas Nordborg Fixes #1329: A plug-in should be able to use a JSP page from an …
Role.java 12.0 KB 7308   5 years Nicklas Nordborg Fixes #2061: Add API for setting registration date on items Added …
RoleKey.java 7.7 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
RootRawBioAssay.java 7.2 KB 7126   6 years Nicklas Nordborg References #2000: Batch API for annotation handling Adding a call to …
Sample.java 8.8 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
ScrollIterator.java 2.3 KB 7551   3 years Nicklas Nordborg References #2129: Preparations for Java 11 support Added the …
ServiceSessionControl.java 20.6 KB 7521   3 years Nicklas Nordborg References #2130: Upgrade 3-rd party libraries Removed the need for a …
ServicesUtil.java 1.9 KB 6630   7 years Nicklas Nordborg References #1892: Implement support for extensions to add their own …
Session.java 6.9 KB 7413   4 years Nicklas Nordborg References #2099: Get location information from ip address Updated …
SessionControl.java 88.6 KB 7816   20 months Nicklas Nordborg References #2213: Extend registration of devices Added isVerified
Setting.java 4.5 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
Shareable.java 3.6 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
ShareableUtil.java 9.9 KB 5590   11 years Nicklas Nordborg References #1589: Delete deprecated classes and methods Removed …
SharedItem.java 3.8 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
SimpleAbsoluteProgressReporter.java 2.6 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
SimpleProgressReporter.java 2.6 KB 6795   7 years Nicklas Nordborg References #1325: Lists of items Displaying a progress bar when …
Software.java 9.0 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
SpecialQuery.java 2.5 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
SpotBatcher.java 11.2 KB 6469   8 years Nicklas Nordborg References #1742: Upgrade to Hibernate 4.x Replaced calls to …
SpotExtraValueBatcher.java 11.6 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
StringParameterType.java 4.4 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
StringTooLongException.java 1.8 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
StringUtil.java 8.6 KB 6022   10 years Nicklas Nordborg Fixes #1672: Join annotation values into a main item query There is …
Subtypable.java 1.3 KB 5631   11 years Nicklas Nordborg References #1597: Subtypes of items Added support for subtypes with …
SubtypableRelatedItems.java 1.5 KB 5823   10 years Nicklas Nordborg References #1590: Documentation cleanup Fixed javadoc warnings.
SupportsPushAnnotations.java 1.6 KB 5983   10 years Nicklas Nordborg References #1605: Inherit annotations from a child path Added support …
SyncFilter.java 14.9 KB 7770   2 years Nicklas Nordborg References #2202: Include information from parent items in list pages …
SystemItem.java 2.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
SystemItems.java 4.7 KB 6881   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Enabled …
Tag.java 5.6 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
TimestampParameterType.java 2.8 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
Transactional.java 2.1 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
TransactionalAction.java 1.6 KB 5877   10 years Nicklas Nordborg References #1616: Clone reporter information to per-experiment tables …
Transformation.java 16.3 KB 7016   6 years Nicklas Nordborg References #1966: The user that delete an item should see the item in …
Trashcan.java 16.2 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
Type.java 19.9 KB 7664   3 years Nicklas Nordborg References #2161: Import data from Excel files The FlatFileParser
Unit.java 20.1 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
UnmodifiableResultList.java 3.4 KB 6127   9 years Nicklas Nordborg Fixes #1725: Add missing @Override annotations Thanks to Eclipse it …
UnsavedItemException.java 2.0 KB 4517   13 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
UnsupportedFileFormatException.java 2.0 KB 4594   13 years Nicklas Nordborg Fixes #1145: Make the generic raw data importer support batch import
Update.java 91.1 KB 7856   15 months Nicklas Nordborg References #2224: Files should be annotatable Core- and data-layer …
UsableDataFileType.java 1.4 KB 5713   10 years Nicklas Nordborg References #1604: Support for multiple files of the same type in a …
User.java 46.4 KB 7461   4 years Nicklas Nordborg Merge pre-3.12 changes to the trunk.
UserClientSetting.java 8.2 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
UserDefaultSetting.java 6.2 KB 6874   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Get rid of generic …
UserDevice.java 7.2 KB 7818   20 months Nicklas Nordborg References #2213: Extend registration of devices Added list of recent …
UserPermissions.java 6.7 KB 5368   12 years Nicklas Nordborg References #1459: Named permissions keys that store predefined …
Validatable.java 1.4 KB 4889   13 years Nicklas Nordborg References #1290: Change source files to UTF-8 Changed 'Hakkinen' to …
Values.java 4.1 KB 7610   3 years Nicklas Nordborg References #2151: Pre-compile all JSP pages before releases Changed …
Version.java 4.6 KB 6898   7 years Nicklas Nordborg References #1940: Fix javadoc warnings Added Xdoclint:syntax and …
VirtualColumn.java 12.3 KB 6875   7 years Nicklas Nordborg References #1939: Fix javac compiler warnings Fixes warnings after …
VirtualDb.java 14.2 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
VirtualTable.java 10.7 KB 7642   3 years Nicklas Nordborg References #2137: Remove some of the deprecated code Removed things …
Well.java 10.8 KB 7381   5 years Nicklas Nordborg References #2084: Upgrade to Hibernate 5.2 Merged development branch …
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