| 1 | # $Id: set_classpath.sh 3510 2007-06-19 06:56:23Z nicklas $ |
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| 2 | # |
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| 3 | # Copyright (C) 2006 Nicklas Nordborg |
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| 4 | # |
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| 5 | # This file is part of BASE - BioArray Software Environment. |
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| 6 | # Available at http://base.thep.lu.se/ |
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| 7 | # |
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| 8 | # BASE is free software; you can redistribute it and/or modify it |
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| 9 | # under the terms of the GNU General Public License as published by |
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| 10 | # the Free Software Foundation; either version 2 of the License, or |
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| 11 | # (at your option) any later version. |
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| 12 | # |
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| 13 | # BASE is distributed in the hope that it will be useful, but |
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| 14 | # WITHOUT ANY WARRANTY; without even the implied warranty of |
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| 15 | # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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| 16 | # General Public License for more details. |
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| 17 | # |
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| 18 | # You should have received a copy of the GNU General Public License |
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| 19 | # along with this program; if not, write to the Free Software |
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| 20 | # Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA |
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| 21 | # 02111-1307, USA. |
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| 22 | |
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| 23 | LIB=../../lib/dist |
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| 24 | |
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| 25 | # Set up the classpath |
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| 26 | CP=. |
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| 27 | CP=$CP:../../config/local |
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| 28 | CP=$CP:../../config/dist |
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| 29 | |
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| 30 | # Testdata |
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| 31 | CP=$CP:data |
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| 32 | CP=$CP:../../testdata |
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| 33 | |
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| 34 | # Base2 core & core plugins, etc. |
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| 35 | CP=$CP:../core |
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| 36 | CP=$CP:../plugins/core |
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| 37 | CP=$CP:../clients/jobagent |
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| 38 | |
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| 39 | # Hibernate |
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| 40 | CP=$CP:$LIB/hibernate3.jar |
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| 41 | CP=$CP:$LIB/cglib-2.1.3.jar |
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| 42 | CP=$CP:$LIB/asm.jar |
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| 43 | CP=$CP:$LIB/asm-attrs.jar |
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| 44 | CP=$CP:$LIB/commons-collections-2.1.1.jar |
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| 45 | CP=$CP:$LIB/commons-logging-1.0.4.jar |
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| 46 | CP=$CP:$LIB/dom4j-1.6.1.jar |
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| 47 | CP=$CP:$LIB/ehcache-1.2.3.jar |
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| 48 | CP=$CP:$LIB/jta.jar |
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| 49 | CP=$CP:$LIB/antlr-2.7.6.jar |
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| 50 | |
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| 51 | # Log4j logging system (also used by Hibernate) |
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| 52 | CP=$CP:$LIB/log4j-1.2.14.jar |
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| 53 | |
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| 54 | # C3P0 Connection pool manager |
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| 55 | CP=$CP:$LIB/c3p0-0.9.1.jar |
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| 56 | |
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| 57 | # MySQL JDBC driver |
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| 58 | CP=$CP:$LIB/mysql-connector-java-5.0.6-bin.jar |
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| 59 | |
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| 60 | # Postgres JDBC driver |
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| 61 | CP=$CP:$LIB/postgresql-8.1-407.jdbc3.jar |
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| 62 | |
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| 63 | # JDOM and Xerces XML parser |
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| 64 | CP=$CP:$LIB/jdom.jar |
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| 65 | CP=$CP:$LIB/jaxen-1.1-beta-7.jar |
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| 66 | CP=$CP:$LIB/saxpath.jar |
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| 67 | CP=$CP:$LIB/xerces-2.9.0.jar |
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| 68 | CP=$CP:$LIB/xml-apis.jar |
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| 69 | |
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| 70 | # Java Advanced Imaging |
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| 71 | CP=$CP:$LIB/jai_codec.jar |
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| 72 | CP=$CP:$LIB/jai_core.jar |
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| 73 | CP=$CP:$LIB/mlibwrapper_jai.jar |
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| 74 | |
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| 75 | # Java Math Expression Parser |
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| 76 | CP=$CP:$LIB/jep-2.4.0.jar |
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| 77 | |
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| 78 | # JFreeChart |
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| 79 | CP=$CP:$LIB/jfreechart-1.0.3.jar |
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| 80 | CP=$CP:$LIB/jcommon-1.0.6.jar |
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| 81 | |
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| 82 | # Affymetrix Fusion SDK |
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| 83 | CP=$CP:$LIB/AffxFusion.jar |
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| 84 | |
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| 85 | # TAR and BZIP |
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| 86 | CP=$CP:$LIB/tar.jar |
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| 87 | CP=$CP:$LIB/bzip2.jar |
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