source: trunk/www/biomaterials/bioplates/view_bioplate.jsp @ 4732

<%-- $Id: view_bioplate.jsp 4732 2009-01-21 14:47:38Z martin $
  ------------------------------------------------------------------
  Copyright (C) 2006 Jari Hakkinen, Nicklas Nordborg, Martin Svensson
  Copyright (C) 2007 Martin Svensson

  This file is part of BASE - BioArray Software Environment.
  Available at http://base.thep.lu.se/

  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
  as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.

  BASE is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with BASE. If not, see <http://www.gnu.org/licenses/>.
  ------------------------------------------------------------------

  @author Martin
  @version 2.10
--%>
<%@ page session="false"
  import="net.sf.basedb.core.SessionControl"
  import="net.sf.basedb.core.DbControl"
  import="net.sf.basedb.core.SystemItems"
  import="net.sf.basedb.core.Group"
  import="net.sf.basedb.core.Item"
  import="net.sf.basedb.core.ItemContext"
  import="net.sf.basedb.core.Permission"
  import="net.sf.basedb.core.AnnotationType"
  import="net.sf.basedb.core.AnnotationSet"
  import="net.sf.basedb.core.BioPlate"
  import="net.sf.basedb.core.PlateGeometry"
  import="net.sf.basedb.core.User"
  import="net.sf.basedb.core.ItemQuery"
  import="net.sf.basedb.core.Include"
  import="net.sf.basedb.core.ItemResultIterator"
  import="net.sf.basedb.core.ItemResultList"
  import="net.sf.basedb.core.MultiPermissions"
  import="net.sf.basedb.core.PermissionDeniedException"
  import="net.sf.basedb.core.PluginDefinition"
  import="net.sf.basedb.core.plugin.GuiContext"
  import="net.sf.basedb.core.plugin.Plugin"
  import="net.sf.basedb.core.Project"
  import="net.sf.basedb.core.query.Orders"
  import="net.sf.basedb.core.query.Hql"
  import="net.sf.basedb.clients.web.Base"
  import="net.sf.basedb.clients.web.PermissionUtil"
  import="net.sf.basedb.clients.web.util.HTML"
  import="net.sf.basedb.util.Values"
  import="java.util.Collections"
  import="java.util.Date"
  import="java.util.Map"
  import="java.util.Set"
  import="java.util.List"
%>
<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
<%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %>
<%@ taglib prefix="tbl" uri="/WEB-INF/table.tld" %>
<%@ taglib prefix="p" uri="/WEB-INF/path.tld" %>
<%!
  private static final Item itemType = Item.BIOPLATE;
  private static final GuiContext guiContext = new GuiContext(itemType, GuiContext.Type.ITEM);
%>
<%
final SessionControl sc = Base.getExistingSessionControl(pageContext, true);
final String ID = sc.getId();
final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null);
final int itemId = cc.getId();
final String tab = Values.getString(request.getParameter("tab"), "properties");
final float scale = Base.getScale(sc);
final DbControl dc = sc.newDbControl();
try
{
  Map<Plugin.MainType, Integer> pluginCount = PluginDefinition.countPlugins(dc, guiContext);

  String title = null;
  BioPlate bioplate = BioPlate.getById(dc, itemId);
  
  final boolean writePermission = bioplate.hasPermission(Permission.WRITE);
  final boolean deletePermission = bioplate.hasPermission(Permission.DELETE);
  final boolean sharePermission = bioplate.hasPermission(Permission.SET_PERMISSION);
  final boolean setOwnerPermission = bioplate.hasPermission(Permission.SET_OWNER);
  final boolean isRemoved = bioplate.isRemoved();
  final boolean isUsed = isRemoved && bioplate.isUsed();
  final boolean deletePermanentlyPermission = deletePermission && !isUsed;
  final boolean isOwner = bioplate.isOwner();
  %>
  <base:page title="<%=title%>">
  <base:head scripts="tabcontrol.js,table.js" styles="toolbar.css,table.css,headertabcontrol.css,path.css">
    <script language="JavaScript">
    function editItem()
    {
      Main.viewOrEditItem('<%=ID%>', '<%=itemType.name()%>', <%=itemId%>, true);
    }
    function shareItem()
    {
      Main.openPopup('index.jsp?ID=<%=ID%>&cmd=ShareItem&item_id=<%=itemId%>', 'SharePlate', 600, 400);
    }
    function deleteItem()
    {
      location.replace('index.jsp?ID=<%=ID%>&cmd=DeleteItem&item_id=<%=itemId%>');
    }
    function restoreItem()
    {
      location.replace('index.jsp?ID=<%=ID%>&cmd=RestoreItem&item_id=<%=itemId%>');
    }
    function deleteItemPermanently()
    {
      Main.deleteItemPermanently('<%=ID%>', true, '<%=itemType.name()%>', <%=itemId%>, '&callback=itemDeleted');
    }
    function itemDeleted()
    {
      Main.listItems('<%=ID%>', '<%=itemType.name()%>');
    }
    function showUsingItems()
    {
      Main.showUsingItems('<%=ID%>', '<%=itemType.name()%>', <%=itemId%>);
    }
    function setOwner()
    {
      Main.openPopup('index.jsp?ID=<%=ID%>&cmd=SetOwnerOfItem&item_id=<%=itemId%>', 'SetOwnerOfItem', 450, 150);
    }
    function runPlugin(cmd)
    {
      Main.openPopup('index.jsp?ID=<%=ID%>&cmd='+cmd+'&item_id=<%=itemId%>', 'RunPlugin'+cmd, 740, 540);
    }
    function viewWells()
    {
      location.href = 'wells/index.jsp?ID=<%=ID%>&bioplate_id=<%=itemId%>';
    }
    function switchTab(tabControlId, tabId)
    {
      if (tabId == 'wells')
      {
        viewWells();
      }
      else
      {
        TabControl.setActiveTab(tabControlId, tabId);
      }
    }
    </script>
  </base:head>
  <base:body>
    <p>
    <p:path>
      <p:pathelement title="Bioplates" href="<%="index.jsp?ID="+ID%>" />
      <p:pathelement title="<%=HTML.encodeTags(bioplate.getName())%>" />
    </p:path>
    
    <t:tabcontrol id="main" active="<%=tab%>" switch="switchTab">
    <t:tab id="properties" title="Properties">
    <tbl:toolbar
      >
      <tbl:button 
        disabled="<%=writePermission ? false : true%>" 
        image="<%=writePermission ? "edit.gif" : "edit_disabled.gif"%>" 
        onclick="editItem()" 
        title="Edit&hellip;" 
        tooltip="<%=writePermission ? "Edit this bioplate" : "You do not have permission to edit this bioplate"%>" 
      />
      <tbl:button 
        disabled="<%=writePermission ? false : true%>" 
        image="<%=writePermission ? "" : ""%>" 
        onclick="bioPlateAct()" 
        title="Bioplate Act&hellip;" 
        tooltip="<%=writePermission ? "Edit the biomaterials on this bioplate" : 
          "You do not have permission to edit the biomaterials on this bioplate"%>" 
      />
      <tbl:button 
        disabled="<%=deletePermission ? false : true%>" 
        image="<%=deletePermission ? "delete.gif" : "delete_disabled.gif"%>" 
        onclick="deleteItem()" 
        title="Delete"
        visible="<%=!bioplate.isRemoved()%>"
        tooltip="<%=deletePermission ? "Delete this bioplate" : "You do not have permission to delete this bioplate"%>" 
      />
      <tbl:button 
        disabled="<%=writePermission ? false : true%>" 
        image="<%=writePermission ? "restore.gif" : "restore_disabled.gif"%>" 
        onclick="restoreItem()" 
        title="Restore"
        visible="<%=bioplate.isRemoved()%>"
        tooltip="<%=writePermission ? "Restore this bioplate" : "You do not have permission to restore this bioplate"%>" 
      />
      <tbl:button 
        disabled="<%=sharePermission ? false : true%>"
        image="<%=sharePermission ? "share.gif" : "share_disabled.gif"%>"
        onclick="shareItem()" 
        title="Share&hellip;" 
        tooltip="<%=sharePermission ? "Share this bioplate to other user, groups and projects" : "You do not have permission to share this bioplate"%>"
      />
      <tbl:button 
        disabled="<%=setOwnerPermission ? false : true%>"
        image="<%=setOwnerPermission ? "take_ownership.png" : "take_ownership_disabled.png"%>"
        onclick="setOwner()" 
        title="Set owner&hellip;"
        tooltip="<%=setOwnerPermission ? "Change owner of this item" : "You do not have permission to change ownership of this item"%>"
      />
      <tbl:button 
        image="import.gif" 
        onclick="runPlugin('ImportItem')" 
        title="Import&hellip;" 
        tooltip="Import data" 
        visible="<%=pluginCount.containsKey(Plugin.MainType.IMPORT)%>"
      />
      <tbl:button 
        image="export.gif" 
        onclick="runPlugin('ExportItem')" 
        title="Export&hellip;" 
        tooltip="Export data" 
        visible="<%=pluginCount.containsKey(Plugin.MainType.EXPORT)%>"
      />
      <tbl:button 
        image="runplugin.gif" 
        onclick="runPlugin('RunPlugin')" 
        title="Run plugin&hellip;" 
        tooltip="Run a plugin" 
        visible="<%=pluginCount.containsKey(Plugin.MainType.OTHER)%>"
      />
      <tbl:button
        image="help.gif"
        onclick="<%="Main.openHelp('" + ID +"', 'plate.view.properties')"%>"
        title="Help&hellip;"
        tooltip="Get help about this page"
      />
      </tbl:toolbar>
    <div class="boxedbottom">
      <div class="itemstatus">Permissions on this item: <i><%=PermissionUtil.getFullPermissionNames(bioplate)%></i></div>
      <%
      if (bioplate.isRemoved() || bioplate.isShared())
      {
        %>
        <div class="itemstatus">
          <base:icon 
            image="<%=deletePermanentlyPermission ? "deleted.gif" : "deleted_disabled.gif"%>"
            onclick="<%=deletePermanentlyPermission ? "deleteItemPermanently()" : null%>"
            tooltip="<%=deletePermanentlyPermission ? "Permanently delete this item" : null%>"
            visible="<%=isRemoved%>"> This item has been flagged for deletion<br></base:icon>
          <base:icon image="used.gif" 
            onclick="showUsingItems()"
            tooltip="Show the items that are using this one"
            visible="<%=isUsed%>"> This item is used by other items and can't be permanently deleted<br></base:icon>
          <base:icon image="shared.gif" 
            visible="<%=bioplate.isShared()%>"> This item is shared to other users, groups and/or projects</base:icon>
        </div>
        <%
      }
      %>
      <table class="form" cellspacing="0">
      <tr>
        <td class="prompt">Name</td>
        <td><%=HTML.encodeTags(bioplate.getName())%></td>
      </tr>
      <tr>
        <td class="prompt">Barcode</td>
        <td><%=HTML.encodeTags(bioplate.getBarcode())%></td>
      </tr>
      <tr>
        <td class="prompt">Geometry</td>
        <td><base:propertyvalue item="<%=bioplate%>" property="plateGeometry" /></td>
      </tr>
      <tr>
        <td class="prompt">Freezer</td>
        <td><base:propertyvalue item="<%=bioplate%>" property="freezer"></base:propertyvalue>
      </tr>
      <tr>
        <td class="prompt">Owner</td>
        <td><base:propertyvalue item="<%=bioplate%>" property="owner" /></td>
      </tr>
      <tr>
        <td class="prompt">Description</td>
        <td><%=HTML.niceFormat(bioplate.getDescription())%></td>
      </tr>
      </table>
      
      <%
      
      // Tables with users/groups/projects that this item is shared to
      MultiPermissions mp = new MultiPermissions(Collections.singleton(bioplate));
      ItemResultIterator<User> users = mp.getUsers().iterate(dc);
      ItemResultIterator<Group> groups = mp.getGroups().iterate(dc);
      ItemResultIterator<Project> projects = mp.getProjects().iterate(dc);
      
      if (users.hasNext() || groups.hasNext() || projects.hasNext())
      {
        %>
        <h4 class="docked">Shared to</h4>
        <tbl:table 
          id="itemsSharedTo"
          clazz="itemlist"
          columns="all"
        >
          <tbl:columndef 
            id="itemType"
            title="Item type"
          />
          <tbl:columndef 
            id="name"
            title="Name"
          />
          <tbl:columndef 
            id="permissions"
            title="Permissions"
          />
          <tbl:data>
            <tbl:columns>
            </tbl:columns>
            <tbl:rows>
            <%
            while(projects.hasNext())
            {
              Project project = projects.next();
              Set<Permission> permissions = mp.getPermissions(project).values().iterator().next();
              %>      
              <tbl:row>
                <tbl:cell column="itemType"><%=project.getType()%></tbl:cell>
                <tbl:cell column="name"><base:icon 
                  image="deleted.gif" 
                  tooltip="This item has been scheduled for deletion" 
                  visible="<%=project.isRemoved()%>"
                /><%=Base.getLinkedName(ID, project, false, true)%></tbl:cell>
                <tbl:cell column="permissions">
                  <%=PermissionUtil.translatePermissionsToString(permissions)%>
                </tbl:cell>
              </tbl:row>
              <%
            }
            while(groups.hasNext())
            {
              Group group = groups.next();
              Set<Permission> permissions = mp.getPermissions(group).values().iterator().next();
              %>
              <tbl:row>             
                <tbl:cell column="itemType"><%=group.getType()%></tbl:cell>
                <tbl:cell column="name"><base:icon 
                  image="deleted.gif" 
                  tooltip="This item has been scheduled for deletion" 
                  visible="<%=group.isRemoved()%>"
                /><%=Base.getLinkedName(ID, group, false, true)%></tbl:cell>
                <tbl:cell column="permissions">
                  <%=PermissionUtil.translatePermissionsToString(permissions)%>
                </tbl:cell>
              </tbl:row>
              <%  
            }
            while (users.hasNext())
            {
              User user = users.next();
              Set<Permission> permissions = mp.getPermissions(user).values().iterator().next();
              %>
              <tbl:row>             
                <tbl:cell column="itemType"><%=user.getType()%></tbl:cell>
                <tbl:cell column="name"><base:icon 
                  image="deleted.gif" 
                  tooltip="This item has been scheduled for deletion" 
                  visible="<%=user.isRemoved()%>"
                /><%=Base.getLinkedName(ID, user, false, true)%></tbl:cell>
                <tbl:cell column="permissions">
                  <%=PermissionUtil.translatePermissionsToString(permissions)%>
                </tbl:cell>
              </tbl:row>
              <%
            }
            %>
            </tbl:rows>
          </tbl:data>
        </tbl:table>
        <%
      }
      else
      {
        %>
        <h4>Shared to</h4>
        This bioplate is not shared 
        (or, you don't have permission to view the ones it is shared to).
        <%
      }
      %>


    </div>
      </t:tab>
      
      <t:tab id="annotations" title="Annotations" >
        <div class="boxed">
        <jsp:include page="../../common/annotations/list_annotations.jsp">
          <jsp:param name="item_type" value="<%=itemType.name()%>" />
          <jsp:param name="item_id" value="<%=itemId%>" />
          <jsp:param name="ID" value="<%=ID%>" />
        </jsp:include>
        </div>
      </t:tab>
      <t:tab id="wells" title="Wells" />
      </t:tabcontrol>
  </base:body>
  </base:page>
  <%
}
finally
{
  if (dc != null) dc.close();
}
%>