1 | <%-- $Id $ |
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2 | ------------------------------------------------------------------ |
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3 | Copyright (C) 2010 Nicklas Nordborg |
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4 | |
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5 | This file is part of BASE - BioArray Software Environment. |
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6 | Available at http://base.thep.lu.se/ |
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7 | |
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8 | BASE is free software; you can redistribute it and/or |
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9 | modify it under the terms of the GNU General Public License |
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10 | as published by the Free Software Foundation; either version 3 |
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11 | of the License, or (at your option) any later version. |
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12 | |
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13 | BASE is distributed in the hope that it will be useful, |
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14 | but WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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16 | GNU General Public License for more details. |
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17 | |
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18 | You should have received a copy of the GNU General Public License |
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19 | along with BASE. If not, see <http://www.gnu.org/licenses/>. |
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20 | ------------------------------------------------------------------ |
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21 | |
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22 | @author Nicklas |
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23 | --%> |
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24 | <%@ page pageEncoding="UTF-8" session="false" contentType="application/json" |
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25 | import="net.sf.basedb.core.SessionControl" |
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26 | import="net.sf.basedb.core.DbControl" |
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27 | import="net.sf.basedb.core.Permission" |
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28 | import="net.sf.basedb.core.BioWell" |
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29 | import="net.sf.basedb.core.MeasuredBioMaterial" |
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30 | import="net.sf.basedb.core.ItemSubtype" |
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31 | import="net.sf.basedb.core.InvalidDataException" |
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32 | import="net.sf.basedb.core.PermissionDeniedException" |
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33 | import="net.sf.basedb.util.Values" |
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34 | import="net.sf.basedb.util.error.ThrowableUtil" |
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35 | import="net.sf.basedb.clients.web.Base" |
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36 | import="net.sf.basedb.clients.web.WebException" |
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37 | import="net.sf.basedb.clients.web.util.HTML" |
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38 | import="org.json.simple.JSONObject" |
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39 | import="org.json.simple.JSONArray" |
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40 | %> |
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41 | <% |
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42 | final SessionControl sc = Base.getExistingSessionControl(pageContext, true); |
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43 | final String ID = sc.getId(); |
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44 | final String cmd = request.getParameter("cmd"); |
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45 | final String root = request.getContextPath()+"/"; |
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46 | final int itemId = Values.getInt(request.getParameter("item_id")); |
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47 | DbControl dc = null; |
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48 | out.clear(); |
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49 | JSONObject json = new JSONObject(); |
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50 | json.put("status", "ok"); |
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51 | try |
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52 | { |
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53 | if ("WellInfo".equals(cmd)) |
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54 | { |
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55 | dc = sc.newDbControl(); |
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56 | boolean encodeStrings = Values.getBoolean(request.getParameter("encodeStrings")); |
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57 | BioWell well = BioWell.getById(dc, itemId); |
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58 | boolean isEmpty = well.isEmpty(); |
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59 | boolean hasBeenUsed = well.hasBeenUsed(); |
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60 | |
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61 | json.put("id", well.getId()); |
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62 | json.put("isEmpty", isEmpty); |
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63 | |
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64 | if (!isEmpty || hasBeenUsed) |
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65 | { |
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66 | JSONObject jsonBioMaterial = new JSONObject(); |
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67 | try |
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68 | { |
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69 | MeasuredBioMaterial bioMaterial = isEmpty ? well.getOriginalBioMaterial() : well.getBioMaterial(); |
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70 | jsonBioMaterial.put("id", bioMaterial.getId()); |
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71 | jsonBioMaterial.put("type", bioMaterial.getType().name()); |
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72 | jsonBioMaterial.put("name", encodeStrings ? HTML.encodeTags(bioMaterial.getName()) : bioMaterial.getName()); |
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73 | jsonBioMaterial.put("description", encodeStrings ? HTML.niceFormat(bioMaterial.getDescription()) : bioMaterial.getDescription()); |
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74 | jsonBioMaterial.put("editable", bioMaterial.hasPermission(Permission.WRITE)); |
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75 | ItemSubtype subtype = bioMaterial.getItemSubtype(); |
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76 | if (subtype != null) |
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77 | { |
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78 | JSONObject jsonSubtype = new JSONObject(); |
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79 | jsonSubtype.put("id", subtype.getId()); |
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80 | jsonSubtype.put("name", HTML.encodeTags(subtype.getName())); |
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81 | jsonBioMaterial.put("subtype", jsonSubtype); |
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82 | } |
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83 | } |
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84 | catch (PermissionDeniedException ex) |
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85 | { |
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86 | jsonBioMaterial.put("denied", true); |
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87 | } |
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88 | json.put("bioMaterial", jsonBioMaterial); |
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89 | } |
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90 | dc.close(); |
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91 | } |
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92 | else |
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93 | { |
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94 | throw new WebException("popup", "Invalid command", "The command {1} is not recognised as a valid command.", cmd); |
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95 | } |
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96 | } |
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97 | catch (Throwable t) |
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98 | { |
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99 | t.printStackTrace(); |
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100 | json.clear(); |
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101 | json.put("status", "error"); |
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102 | json.put("message", t.getMessage()); |
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103 | json.put("stacktrace", ThrowableUtil.stackTraceToString(t)); |
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104 | } |
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105 | finally |
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106 | { |
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107 | json.writeJSONString(out); |
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108 | out.flush(); |
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109 | if (dc != null) dc.close(); |
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110 | } |
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111 | %> |
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