source: trunk/www/biomaterials/bioplatetypes/edit_platetype.jsp @ 5641

Last change on this file since 5641 was 5641, checked in by Nicklas Nordborg, 12 years ago

References #1153: Handling short read transcript sequence data

Removed LabeledExtract and related classes. Extract takes it place in most situations, including a temporary link to hybridizations. All tests programs pass and the web client is more or less working. The next step is to replace Hybridization with PhysicalBioAssay.

  • Property svn:eol-style set to native
  • Property svn:keywords set to Date Id
File size: 6.8 KB
Line 
1<%-- $Id $
2  ------------------------------------------------------------------
3  Copyright (C) 2010 Nicklas Nordborg
4
5  This file is part of BASE - BioArray Software Environment.
6  Available at http://base.thep.lu.se/
7
8  BASE is free software; you can redistribute it and/or
9  modify it under the terms of the GNU General Public License
10  as published by the Free Software Foundation; either version 3
11  of the License, or (at your option) any later version.
12
13  BASE is distributed in the hope that it will be useful,
14  but WITHOUT ANY WARRANTY; without even the implied warranty of
15  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
16  GNU General Public License for more details.
17
18  You should have received a copy of the GNU General Public License
19  along with BASE. If not, see <http://www.gnu.org/licenses/>.
20  ------------------------------------------------------------------
21
22
23  @author Nicklas
24  @version 2.0
25--%>
26<%@ page pageEncoding="UTF-8" session="false"
27  import="net.sf.basedb.core.SessionControl"
28  import="net.sf.basedb.core.DbControl"
29  import="net.sf.basedb.core.Item"
30  import="net.sf.basedb.core.ItemContext"
31  import="net.sf.basedb.core.SystemItems"
32  import="net.sf.basedb.core.Permission"
33  import="net.sf.basedb.core.Include"
34  import="net.sf.basedb.core.BioPlateType"
35  import="net.sf.basedb.core.BioWell"
36  import="net.sf.basedb.core.ItemQuery"
37  import="net.sf.basedb.core.ItemResultList"
38  import="net.sf.basedb.core.PermissionDeniedException"
39  import="net.sf.basedb.core.BaseException"
40  import="net.sf.basedb.core.query.Orders"
41  import="net.sf.basedb.core.query.Hql"
42  import="net.sf.basedb.clients.web.Base"
43  import="net.sf.basedb.clients.web.util.HTML"
44  import="net.sf.basedb.util.Values"
45  import="net.sf.basedb.core.plugin.GuiContext"
46  import="net.sf.basedb.clients.web.extensions.ExtensionsControl"
47  import="net.sf.basedb.clients.web.extensions.JspContext"
48  import="net.sf.basedb.clients.web.extensions.edit.EditUtil"
49  import="net.sf.basedb.util.extensions.ExtensionsInvoker"
50  import="java.util.List"
51  import="java.util.Set"
52  import="java.util.HashSet"
53  import="java.util.Date"
54%>
55<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
56<%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %>
57<%
58final Item itemType = Item.BIOPLATETYPE;
59final SessionControl sc = Base.getExistingSessionControl(pageContext, true);
60final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null);
61final int itemId = cc.getId();
62final String ID = sc.getId();
63final float scale = Base.getScale(sc);
64final DbControl dc = sc.newDbControl();
65try
66{
67  String title = null;
68  BioPlateType bioPlateType = null;
69  BioWell.LockMode lockMode = BioWell.LockMode.UNLOCKED;
70 
71  if (itemId == 0)
72  {
73    title = "Create bio plate type";
74    cc.removeObject("item");
75    int lm = Values.getInt(cc.getPropertyValue("lockMode"));
76    lockMode = BioWell.LockMode.fromValue(lm);
77  }
78  else
79  {
80    bioPlateType = BioPlateType.getById(dc, itemId);
81    bioPlateType.checkPermission(Permission.WRITE);
82    lockMode = bioPlateType.getLockMode();
83    cc.setObject("item", bioPlateType);
84    title = "Edit bio plate type -- " + HTML.encodeTags(bioPlateType.getName());
85  }
86  final String clazz = "class=\"text\"";
87  final String requiredClazz = "class=\"text required\"";
88  JspContext jspContext = ExtensionsControl.createContext(dc, pageContext, GuiContext.item(itemType), bioPlateType);
89  ExtensionsInvoker invoker = EditUtil.useEditExtensions(jspContext);
90  %>
91  <base:page type="popup" title="<%=title%>">
92  <base:head scripts="tabcontrol.js" styles="tabcontrol.css">
93    <ext:scripts context="<%=jspContext%>" />
94    <ext:stylesheets context="<%=jspContext%>" />
95    <script language="JavaScript">
96    // Validate the "BioPlateType" tab
97    function validateBioPlateType()
98    {
99      var frm = document.forms['bioPlateType'];
100      if (Main.trimString(frm.name.value) == '')
101      {
102        alert("You must enter a name");
103        frm.name.focus();
104        return false;
105      }
106      return true;
107    }
108
109    // Submit the form
110    function saveSettings()
111    {
112      var frm = document.forms['bioPlateType'];
113      if (TabControl.validateActiveTab('settings'))
114      {
115        frm.submit();
116      }
117    }
118   
119    function init()
120    {
121      var frm = document.forms['bioPlateType'];
122      <%
123      if (bioPlateType == null)
124      {
125        %>
126        frm.name.focus();
127        frm.name.select();
128        <%
129      }
130      %>
131    }
132    </script>
133  </base:head>
134  <base:body onload="init()">
135    <p>
136    <form action="index.jsp?ID=<%=ID%>" method="post" name="bioPlateType" onsubmit="return false;">
137    <input type="hidden" name="cmd" value="UpdateItem">
138
139    <h3 class="docked"><%=title%> <base:help tabcontrol="settings" /></h3>
140    <t:tabcontrol id="settings" contentstyle="<%="height: "+(int)(scale*260)+"px;"%>" 
141      position="bottom"  remember="<%=bioPlateType != null%>"
142      extensions="<%=invoker%>">
143    <t:tab id="info" title="Bio plate type" validate="validateBioPlateType()" helpid="bioplatetype.edit">
144      <table class="form" cellspacing=0>
145      <tr>
146        <td class="prompt">Name</td>
147        <td><input <%=requiredClazz%> type="text" name="name" 
148          value="<%=HTML.encodeTags(bioPlateType == null ? Values.getString(cc.getPropertyValue("name"), "New bio plate type") : bioPlateType.getName())%>" 
149          size="40" maxlength="<%=BioPlateType.MAX_NAME_LENGTH%>"></td>
150      </tr>
151      <%
152      if (bioPlateType == null)
153      {
154        %>
155        <tr valign=top>
156          <td class="prompt">Biomaterial type</td>
157          <td>
158            <select name="bioMaterialType" class="required unchangeable">
159            <option value="">any
160            <option value="<%=Item.SAMPLE.name()%>">Sample
161            <option value="<%=Item.EXTRACT.name()%>">Extract
162            </select>
163          </td>
164        </tr>
165        <%
166      }
167      %>
168      <tr>
169        <td class="prompt">Well lock mode</td>
170        <td>
171          <select name="lockMode">
172          <%
173          for (BioWell.LockMode lm : BioWell.LockMode.values())
174          {
175            String selected = lm == lockMode ? "selected" : "";
176            %>
177            <option value="<%=lm.name()%>" <%=selected%>><%=lm%>
178            <%
179          }
180          %>
181          </select>
182        </td>
183      </tr>
184      <tr valign=top>
185        <td class="prompt">Description</td>
186        <td nowrap>
187          <textarea <%=clazz%> rows="4" cols="40" name="description" wrap="virtual"
188            ><%=HTML.encodeTags(bioPlateType == null ? cc.getPropertyValue("description") : bioPlateType.getDescription())%></textarea>
189          <a href="javascript:Main.zoom('Description', 'bioPlateType', 'description')"
190            title="Edit in larger window"><base:icon image="zoom.gif" /></a>
191        </td>
192      </tr>
193      </table>
194      <div align=right>&nbsp;<i><base:icon image="required.gif" /> = required information</i>
195      <%if (bioPlateType == null) {%><br>
196        <i><base:icon image="unchangeable.gif" /> = can't be changed later</i>
197        <%}%>
198      </div>
199    </t:tab>
200    </t:tabcontrol>
201
202    <table align="center">
203    <tr>
204      <td width="50%"><base:button onclick="saveSettings()" title="Save" /></td>
205      <td width="50%"><base:button onclick="window.close()" title="Cancel" /></td>
206    </tr>
207    </table>
208    </form>
209  </base:body>
210  </base:page>
211  <%
212}
213finally
214{
215  if (dc != null) dc.close();
216}
217%>
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