source: trunk/www/biomaterials/bioplatetypes/edit_platetype.jsp @ 5708

Last change on this file since 5708 was 5708, checked in by Nicklas Nordborg, 10 years ago

References #1590: Documentation cleanup

Biomaterials section. Added empty sections for biomaterial lists and bioplate events that hopefully will be written some day. All screen shots must be updated.

Fixed spelling of "bioplate" in a lot of jsp scripts.

Display well coordinates without brackets. A1 instead of [A,1].

Fixed an issue with the regular expression used to link different help texts in the web client.

Reorganized the biomaterial lims menu so that it is consistent with the documentation.

  • Property svn:eol-style set to native
  • Property svn:keywords set to Date Id
File size: 6.8 KB
Line 
1<%-- $Id $
2  ------------------------------------------------------------------
3  Copyright (C) 2010 Nicklas Nordborg
4
5  This file is part of BASE - BioArray Software Environment.
6  Available at http://base.thep.lu.se/
7
8  BASE is free software; you can redistribute it and/or
9  modify it under the terms of the GNU General Public License
10  as published by the Free Software Foundation; either version 3
11  of the License, or (at your option) any later version.
12
13  BASE is distributed in the hope that it will be useful,
14  but WITHOUT ANY WARRANTY; without even the implied warranty of
15  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
16  GNU General Public License for more details.
17
18  You should have received a copy of the GNU General Public License
19  along with BASE. If not, see <http://www.gnu.org/licenses/>.
20  ------------------------------------------------------------------
21
22
23  @author Nicklas
24  @version 2.0
25--%>
26<%@ page pageEncoding="UTF-8" session="false"
27  import="net.sf.basedb.core.SessionControl"
28  import="net.sf.basedb.core.DbControl"
29  import="net.sf.basedb.core.Item"
30  import="net.sf.basedb.core.ItemContext"
31  import="net.sf.basedb.core.SystemItems"
32  import="net.sf.basedb.core.Permission"
33  import="net.sf.basedb.core.Include"
34  import="net.sf.basedb.core.BioPlateType"
35  import="net.sf.basedb.core.BioWell"
36  import="net.sf.basedb.core.ItemQuery"
37  import="net.sf.basedb.core.ItemResultList"
38  import="net.sf.basedb.core.PermissionDeniedException"
39  import="net.sf.basedb.core.BaseException"
40  import="net.sf.basedb.core.query.Orders"
41  import="net.sf.basedb.core.query.Hql"
42  import="net.sf.basedb.clients.web.Base"
43  import="net.sf.basedb.clients.web.util.HTML"
44  import="net.sf.basedb.util.Values"
45  import="net.sf.basedb.core.plugin.GuiContext"
46  import="net.sf.basedb.clients.web.extensions.ExtensionsControl"
47  import="net.sf.basedb.clients.web.extensions.JspContext"
48  import="net.sf.basedb.clients.web.extensions.edit.EditUtil"
49  import="net.sf.basedb.util.extensions.ExtensionsInvoker"
50  import="java.util.List"
51  import="java.util.Set"
52  import="java.util.HashSet"
53  import="java.util.Date"
54%>
55<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
56<%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %>
57<%
58final Item itemType = Item.BIOPLATETYPE;
59final SessionControl sc = Base.getExistingSessionControl(pageContext, true);
60final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null);
61final int itemId = cc.getId();
62final String ID = sc.getId();
63final float scale = Base.getScale(sc);
64final DbControl dc = sc.newDbControl();
65try
66{
67  String title = null;
68  BioPlateType bioPlateType = null;
69  BioWell.LockMode lockMode = BioWell.LockMode.UNLOCKED;
70 
71  if (itemId == 0)
72  {
73    title = "Create bioplate type";
74    cc.removeObject("item");
75    int lm = Values.getInt(cc.getPropertyValue("lockMode"));
76    lockMode = BioWell.LockMode.fromValue(lm);
77  }
78  else
79  {
80    bioPlateType = BioPlateType.getById(dc, itemId);
81    bioPlateType.checkPermission(Permission.WRITE);
82    lockMode = bioPlateType.getLockMode();
83    cc.setObject("item", bioPlateType);
84    title = "Edit bioplate type -- " + HTML.encodeTags(bioPlateType.getName());
85  }
86  final String clazz = "class=\"text\"";
87  final String requiredClazz = "class=\"text required\"";
88  JspContext jspContext = ExtensionsControl.createContext(dc, pageContext, GuiContext.item(itemType), bioPlateType);
89  ExtensionsInvoker invoker = EditUtil.useEditExtensions(jspContext);
90  %>
91  <base:page type="popup" title="<%=title%>">
92  <base:head scripts="tabcontrol.js" styles="tabcontrol.css">
93    <ext:scripts context="<%=jspContext%>" />
94    <ext:stylesheets context="<%=jspContext%>" />
95    <script language="JavaScript">
96    // Validate the "BioPlateType" tab
97    function validateBioPlateType()
98    {
99      var frm = document.forms['bioPlateType'];
100      if (Main.trimString(frm.name.value) == '')
101      {
102        alert("You must enter a name");
103        frm.name.focus();
104        return false;
105      }
106      return true;
107    }
108
109    // Submit the form
110    function saveSettings()
111    {
112      var frm = document.forms['bioPlateType'];
113      if (TabControl.validateActiveTab('settings'))
114      {
115        frm.submit();
116      }
117    }
118   
119    function init()
120    {
121      var frm = document.forms['bioPlateType'];
122      <%
123      if (bioPlateType == null)
124      {
125        %>
126        frm.name.focus();
127        frm.name.select();
128        <%
129      }
130      %>
131    }
132    </script>
133  </base:head>
134  <base:body onload="init()">
135    <p>
136    <form action="index.jsp?ID=<%=ID%>" method="post" name="bioPlateType" onsubmit="return false;">
137    <input type="hidden" name="cmd" value="UpdateItem">
138
139    <h3 class="docked"><%=title%> <base:help tabcontrol="settings" /></h3>
140    <t:tabcontrol id="settings" contentstyle="<%="height: "+(int)(scale*260)+"px;"%>" 
141      position="bottom"  remember="<%=bioPlateType != null%>"
142      extensions="<%=invoker%>">
143    <t:tab id="info" title="Bioplate type" validate="validateBioPlateType()" helpid="bioplatetype.edit">
144      <table class="form" cellspacing=0>
145      <tr>
146        <td class="prompt">Name</td>
147        <td><input <%=requiredClazz%> type="text" name="name" 
148          value="<%=HTML.encodeTags(bioPlateType == null ? Values.getString(cc.getPropertyValue("name"), "New bioplate type") : bioPlateType.getName())%>" 
149          size="40" maxlength="<%=BioPlateType.MAX_NAME_LENGTH%>"></td>
150      </tr>
151      <%
152      if (bioPlateType == null)
153      {
154        %>
155        <tr valign=top>
156          <td class="prompt">Biomaterial type</td>
157          <td>
158            <select name="bioMaterialType" class="required unchangeable">
159            <option value="">any
160            <option value="<%=Item.SAMPLE.name()%>">Sample
161            <option value="<%=Item.EXTRACT.name()%>">Extract
162            </select>
163          </td>
164        </tr>
165        <%
166      }
167      %>
168      <tr>
169        <td class="prompt">Well lock mode</td>
170        <td>
171          <select name="lockMode">
172          <%
173          for (BioWell.LockMode lm : BioWell.LockMode.values())
174          {
175            String selected = lm == lockMode ? "selected" : "";
176            %>
177            <option value="<%=lm.name()%>" <%=selected%>><%=lm%>
178            <%
179          }
180          %>
181          </select>
182        </td>
183      </tr>
184      <tr valign=top>
185        <td class="prompt">Description</td>
186        <td nowrap>
187          <textarea <%=clazz%> rows="4" cols="40" name="description" wrap="virtual"
188            ><%=HTML.encodeTags(bioPlateType == null ? cc.getPropertyValue("description") : bioPlateType.getDescription())%></textarea>
189          <a href="javascript:Main.zoom('Description', 'bioPlateType', 'description')"
190            title="Edit in larger window"><base:icon image="zoom.gif" /></a>
191        </td>
192      </tr>
193      </table>
194      <div align=right>&nbsp;<i><base:icon image="required.gif" /> = required information</i>
195      <%if (bioPlateType == null) {%><br>
196        <i><base:icon image="unchangeable.gif" /> = can't be changed later</i>
197        <%}%>
198      </div>
199    </t:tab>
200    </t:tabcontrol>
201
202    <table align="center">
203    <tr>
204      <td width="50%"><base:button onclick="saveSettings()" title="Save" /></td>
205      <td width="50%"><base:button onclick="window.close()" title="Cancel" /></td>
206    </tr>
207    </table>
208    </form>
209  </base:body>
210  </base:page>
211  <%
212}
213finally
214{
215  if (dc != null) dc.close();
216}
217%>
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