source: trunk/www/biomaterials/events/view_event.jsp @ 5937

Last change on this file since 5937 was 5937, checked in by Nicklas Nordborg, 10 years ago

References #1655: GUI improvements

  • Fixes rest of view pages in biomaterials menu.
  • Use SVG filter to make disabled button images grayscale.
  • Property svn:eol-style set to native
  • Property svn:keywords set to Date Id
File size: 11.2 KB
Line 
1<%-- $Id: view_event.jsp 5937 2012-01-27 11:00:26Z nicklas $
2  ------------------------------------------------------------------
3  Copyright (C) 2006 Jari Häkkinen, Nicklas Nordborg, Martin Svensson
4
5  This file is part of BASE - BioArray Software Environment.
6  Available at http://base.thep.lu.se/
7
8  BASE is free software; you can redistribute it and/or
9  modify it under the terms of the GNU General Public License
10  as published by the Free Software Foundation; either version 3
11  of the License, or (at your option) any later version.
12
13  BASE is distributed in the hope that it will be useful,
14  but WITHOUT ANY WARRANTY; without even the implied warranty of
15  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
16  GNU General Public License for more details.
17
18  You should have received a copy of the GNU General Public License
19  along with BASE. If not, see <http://www.gnu.org/licenses/>.
20  ------------------------------------------------------------------
21
22  @author Nicklas
23  @version 2.0
24--%>
25<%@ page pageEncoding="UTF-8" session="false"
26  import="net.sf.basedb.core.SessionControl"
27  import="net.sf.basedb.core.DbControl"
28  import="net.sf.basedb.core.SystemItems"
29  import="net.sf.basedb.core.Item"
30  import="net.sf.basedb.core.ItemContext"
31  import="net.sf.basedb.core.Permission"
32  import="net.sf.basedb.core.Plate"
33  import="net.sf.basedb.core.BioMaterial"
34  import="net.sf.basedb.core.BioMaterialEvent"
35  import="net.sf.basedb.core.BioMaterialEventSource"
36  import="net.sf.basedb.core.BioPlateEventParticipant"
37  import="net.sf.basedb.core.BioPlateEvent"
38  import="net.sf.basedb.core.BioPlate"
39  import="net.sf.basedb.core.MeasuredBioMaterial"
40  import="net.sf.basedb.core.PhysicalBioAssay"
41  import="net.sf.basedb.core.Protocol"
42  import="net.sf.basedb.core.PermissionDeniedException"
43  import="net.sf.basedb.core.ItemQuery"
44  import="net.sf.basedb.core.SpecialQuery"
45  import="net.sf.basedb.core.ItemResultList"
46  import="net.sf.basedb.core.Include"
47  import="net.sf.basedb.core.PluginDefinition"
48  import="net.sf.basedb.core.query.Orders"
49  import="net.sf.basedb.core.query.Hql"
50  import="net.sf.basedb.core.query.ResultList"
51  import="net.sf.basedb.core.plugin.GuiContext"
52  import="net.sf.basedb.core.plugin.Plugin"
53  import="net.sf.basedb.clients.web.Base"
54  import="net.sf.basedb.clients.web.PermissionUtil"
55  import="net.sf.basedb.clients.web.util.HTML"
56  import="net.sf.basedb.util.Values"
57  import="net.sf.basedb.util.formatter.Formatter"
58  import="net.sf.basedb.clients.web.formatter.FormatterFactory"
59  import="net.sf.basedb.clients.web.extensions.ExtensionsControl"
60  import="net.sf.basedb.clients.web.extensions.JspContext"
61  import="net.sf.basedb.clients.web.extensions.renderer.PrefixSuffixRenderer"
62  import="net.sf.basedb.clients.web.extensions.toolbar.ToolbarUtil"
63  import="net.sf.basedb.util.extensions.ExtensionsInvoker"
64  import="java.util.Date"
65  import="java.util.Map"
66  import="java.util.Set"
67%>
68<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
69<%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %>
70<%@ taglib prefix="tbl" uri="/WEB-INF/table.tld" %>
71<%@ taglib prefix="p" uri="/WEB-INF/path.tld" %>
72<%@ taglib prefix="ext" uri="/WEB-INF/extensions.tld" %>
73<%!
74  private static final Item itemType = Item.BIOMATERIALEVENT;
75  private static final GuiContext guiContext = new GuiContext(itemType, GuiContext.Type.ITEM);
76%>
77<%
78final SessionControl sc = Base.getExistingSessionControl(pageContext, true);
79final String ID = sc.getId();
80final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null);
81final int itemId = cc.getId();
82final Item bioMaterialType = Item.valueOf(request.getParameter("biomaterial_type"));
83final int bioMaterialId = Values.getInt(request.getParameter("biomaterial_id"));
84final float scale = Base.getScale(sc);
85final DbControl dc = sc.newDbControl();
86try
87{
88  Formatter<Date> dateFormatter = FormatterFactory.getDateFormatter(sc);
89  Map<Plugin.MainType, Integer> pluginCount = PluginDefinition.countPlugins(dc, guiContext);
90
91  String title = null;
92  BioMaterialEvent event = BioMaterialEvent.getById(dc, itemId);
93  MeasuredBioMaterial bioMaterial = (MeasuredBioMaterial)bioMaterialType.getById(dc, bioMaterialId);
94  BioMaterialEvent.Type eventType = event.getEventType();
95  boolean isPlateEvent = event.isPlateEvent();
96 
97  BioPlateEventParticipant participant = null;
98  BioPlateEvent plateEvent = null;
99  BioPlate plate = null;
100  if (isPlateEvent)
101  {
102    try
103    {
104      participant = event.getBioPlateEventParticipant();
105      plateEvent = participant.getEvent();
106      plate = participant.getBioPlate();
107    }
108    catch (RuntimeException ex)
109    {}
110  }
111 
112  String viewPage = null;
113  String listName = null;
114  if (bioMaterialType == Item.SAMPLE)
115  {
116    listName = "Samples";
117    viewPage = "../samples/index.jsp";
118  }
119  else if (bioMaterialType == Item.EXTRACT)
120  {
121    listName = "Extracts";
122    viewPage = "../extracts/index.jsp";
123  }
124
125  final boolean writePermission = event.hasPermission(Permission.WRITE) && eventType == BioMaterialEvent.Type.OTHER;
126  final boolean deletePermission = event.hasPermission(Permission.DELETE);
127  JspContext jspContext = ExtensionsControl.createContext(dc, pageContext, guiContext, event);
128  ExtensionsInvoker invoker = ToolbarUtil.useExtensions(jspContext);
129  %>
130  <base:page title="<%=title%>">
131  <base:head scripts="table.js,tabcontrol.js" styles="toolbar.css,table.css,headertabcontrol.css,path.css">
132    <ext:scripts context="<%=jspContext%>" />
133    <ext:stylesheets context="<%=jspContext%>" />
134    <script language="JavaScript">
135    function editItem()
136    {
137      Main.viewOrEditItem('<%=ID%>', '<%=itemType.name()%>', <%=itemId%>, true, '&biomaterial_type=<%=bioMaterialType.name()%>&biomaterial_id=<%=bioMaterial.getId()%>');
138    }
139    function deleteItem()
140    {
141      if (confirm('This can\'t be undone. Continue?'))
142      {
143        location.replace('index.jsp?ID=<%=ID%>&cmd=DeleteItem&&biomaterial_id=<%=bioMaterialId%>&biomaterial_type=<%=bioMaterialType.name()%>&item_id=<%=itemId%>');
144      }
145    }
146    function runPlugin(cmd)
147    {
148      Main.openPopup('index.jsp?ID=<%=ID%>&cmd='+cmd+'&biomaterial_id=<%=bioMaterialId%>&biomaterial_type=<%=bioMaterialType.name()%>&item_id=<%=itemId%>', 'RunPlugin'+cmd, 750, 500);
149    }
150    </script>
151  </base:head>
152  <base:body>
153    <p:path><p:pathelement 
154      title="<%=listName%>" href="<%=viewPage+"?ID="+ID%>" /><p:pathelement 
155      title="<%=HTML.encodeTags(bioMaterial.getName())%>" 
156        href="<%="index.jsp?ID="+ID+"&biomaterial_id="+bioMaterialId+"&biomaterial_type="+bioMaterialType.name()%>" 
157      /><p:pathelement title="Event" /></p:path>
158   
159    <t:tabcontrol id="main" 
160      subclass="content mastertabcontrol"
161      active="properties" switch="switchTab">
162    <t:tab id="properties" title="Properties">
163      <div>
164      <table class="fullform bottomborder">
165      <tr>
166        <th class="itemstatus"></th>
167        <td style="padding: 0px;" colspan="2">
168          <tbl:toolbar subclass="bottomborder">
169            <tbl:button 
170              disabled="<%=writePermission ? false : true%>" 
171              image="edit.gif" 
172              onclick="editItem()" 
173              title="Edit&hellip;" 
174              tooltip="<%=writePermission ? "Edit this event" : "You do not have permission to edit this event"%>" 
175            />
176            <tbl:button 
177              disabled="<%=deletePermission ? false : true%>" 
178              image="delete.gif" 
179              onclick="deleteItem()" 
180              title="Delete"
181              tooltip="<%=deletePermission ? "Delete this event" : "You do not have permission to event this event"%>" 
182            />
183            <tbl:button 
184              image="import.gif" 
185              onclick="runPlugin('ImportItem')" 
186              title="Import&hellip;" 
187              tooltip="Import data" 
188              visible="<%=pluginCount.containsKey(Plugin.MainType.IMPORT)%>"
189            />
190            <tbl:button 
191              image="export.gif" 
192              onclick="runPlugin('ExportItem')" 
193              title="Export&hellip;" 
194              tooltip="Export data" 
195              visible="<%=pluginCount.containsKey(Plugin.MainType.EXPORT)%>"
196            />
197            <tbl:button 
198              image="runplugin.gif" 
199              onclick="runPlugin('RunPlugin')" 
200              title="Run plugin&hellip;" 
201              tooltip="Run a plugin" 
202              visible="<%=pluginCount.containsKey(Plugin.MainType.OTHER)%>"
203            />
204            <ext:render extensions="<%=invoker%>" context="<%=jspContext%>" 
205              wrapper="<%=new PrefixSuffixRenderer(jspContext, "<td>", "</td>") %>"/>
206          </tbl:toolbar>
207        </td>
208      </tr>
209      <%
210      if (isPlateEvent)
211      {
212        %>
213        <tr>
214          <th>Releated plate event</th>
215          <td><%=Base.getLinkedName(ID, plateEvent, plateEvent == null, true) %></td>
216        </tr>
217        <tr>
218          <th class="subprompt">- bioplate</th>
219          <td><%=Base.getLinkedName(ID, plate, plate == null, true)%>
220          <%
221          if (participant != null)
222          {
223            %>
224            (<%=HTML.encodeTags(participant.getRole())%>)
225            <%
226          }
227          %>
228          </td>
229        </tr>
230        <tr>
231          <th class="subprompt">- event type</th>
232          <td><%
233            if (plateEvent != null)
234            {
235              %>
236              <base:propertyvalue item="<%=plateEvent%>" property="eventType" />
237              <%
238            }
239            %>
240          </td>
241        </tr>
242        <%
243      }
244      %>
245      <tr>
246        <th>Event date</th>
247        <td><%=dateFormatter.format(event.getEventDate())%></td>
248      </tr>
249      <tr>
250        <th>Registration date</th>
251        <td><%=dateFormatter.format(event.getEntryDate())%></td>
252      </tr>
253      <tr>
254        <th>Used quantity</th>
255        <td><%=Values.formatNumber(event.getUsedQuantity(bioMaterial), 2, " µg")%></td>
256      </tr>
257      <tr>
258        <th>Event type</th>
259        <td><%=eventType%></td>
260      </tr>
261      <%
262      if (eventType != BioMaterialEvent.Type.OTHER)
263      {
264        if (eventType == BioMaterialEvent.Type.CREATION)
265        {         
266          %>
267          <tr>
268            <th>Product</th>
269            <td><base:propertyvalue item="<%=event%>" property="bioMaterial"/></td>
270          </tr>
271          <%
272        }
273        else if (eventType == BioMaterialEvent.Type.BIOASSAY)
274        {         
275          %>
276          <tr>
277            <th>Physical bioassay</th>
278            <td><base:propertyvalue item="<%=event%>" property="physicalBioAssay"/></td>
279          </tr>
280          <%
281        }
282        SpecialQuery<BioMaterialEventSource> sourcesQuery = event.getEventSources();
283        sourcesQuery.order(Orders.asc(Hql.property("bioMaterial.name")));
284        ResultList<BioMaterialEventSource> sources = sourcesQuery.list(dc);
285        %>
286        <tr class="big">
287          <th>Sources</th>
288          <td>
289          <%
290          for (BioMaterialEventSource evtSrc : sources)
291          {
292            BioMaterial source = null;
293            Item sourceType = null;
294            try
295            {
296              source = evtSrc.getBioMaterial();
297              sourceType = source.getType();
298            }
299            catch (PermissionDeniedException ex)
300            {}
301            %>
302            <%=Base.getLinkedName(ID, source, source == null, true)%>
303            <%=sourceType != null ? "(" + sourceType + ")" : "" %>
304            <%=Values.formatNumber(evtSrc.getUsedQuantity(), 2, " µg")%>
305            <br>
306            <%
307          }
308          %>
309          </td>
310        </tr>
311        <%
312      }
313      %>
314      <tr>
315        <th>Protocol</th>
316        <td><base:propertyvalue item="<%=event%>" property="protocol"/></td>
317      </tr>
318      <tr>
319        <th>User</th>
320        <td><base:propertyvalue item="<%=event%>" property="user"/></td>
321      </tr>
322      <tr>
323        <th>Permissions</th>
324        <td><%=PermissionUtil.getFullPermissionNames(event)%></td>
325      </tr>
326      <tr>
327        <th>Comment</th>
328        <td><%=HTML.niceFormat(event.getComment())%></td>
329      </tr>
330      </table>
331     
332      <jsp:include page="../../common/anytoany/list_anytoany.jsp">
333        <jsp:param name="ID" value="<%=ID%>" />
334        <jsp:param name="item_type" value="<%=itemType.name()%>" />
335        <jsp:param name="item_id" value="<%=itemId%>" />
336        <jsp:param name="title" value="Other items related to this event" />
337      </jsp:include>
338
339      </t:tab>
340      </t:tabcontrol>
341
342  </base:body>
343  </base:page>
344  <%
345}
346finally
347{
348  if (dc != null) dc.close();
349}
350
351%>
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