source: trunk/www/biomaterials/extracts/view_extract.jsp @ 4882

<%-- $Id: view_extract.jsp 4882 2009-04-03 10:53:42Z nicklas $
  ------------------------------------------------------------------
  Copyright (C) 2006 Johan Enell, Jari Hakkinen, Nicklas Nordborg, Martin Svensson
  Copyright (C) 2007 Martin Svensson

  This file is part of BASE - BioArray Software Environment.
  Available at http://base.thep.lu.se/

  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
  as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.

  BASE is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with BASE. If not, see <http://www.gnu.org/licenses/>.
  ------------------------------------------------------------------

  @author Nicklas
  @version 2.0
--%>
<%@ page session="false"
  import="net.sf.basedb.core.SessionControl"
  import="net.sf.basedb.core.DbControl"
  import="net.sf.basedb.core.SystemItems"
  import="net.sf.basedb.core.Group"
  import="net.sf.basedb.core.Item"
  import="net.sf.basedb.core.ItemContext"
  import="net.sf.basedb.core.ItemProxy"
  import="net.sf.basedb.core.ItemResultIterator"
  import="net.sf.basedb.core.Permission"
  import="net.sf.basedb.core.Extract"
  import="net.sf.basedb.core.LabeledExtract"
  import="net.sf.basedb.core.Sample"
  import="net.sf.basedb.core.BioMaterialEvent"
  import="net.sf.basedb.core.BioWell"
  import="net.sf.basedb.core.MultiPermissions"
  import="net.sf.basedb.core.Protocol"
  import="net.sf.basedb.core.Project"
  import="net.sf.basedb.core.User"
  import="net.sf.basedb.core.ItemQuery"
  import="net.sf.basedb.core.ItemResultList"
  import="net.sf.basedb.core.Include"
  import="net.sf.basedb.core.query.Orders"
  import="net.sf.basedb.core.query.Hql"
  import="net.sf.basedb.core.query.Restrictions"
  import="net.sf.basedb.core.query.Expressions"
  import="net.sf.basedb.core.PermissionDeniedException"
  import="net.sf.basedb.core.PluginDefinition"
  import="net.sf.basedb.core.plugin.GuiContext"
  import="net.sf.basedb.core.plugin.Plugin"
  import="net.sf.basedb.core.Type"
  import="net.sf.basedb.clients.web.Base"
  import="net.sf.basedb.clients.web.PermissionUtil"
  import="net.sf.basedb.clients.web.util.HTML"
  import="net.sf.basedb.util.Values"
  import="net.sf.basedb.util.formatter.Formatter"
  import="net.sf.basedb.util.formatter.WellCoordinateFormatter"
  import="net.sf.basedb.clients.web.formatter.FormatterFactory"
  import="net.sf.basedb.clients.web.extensions.ExtensionsControl"
  import="net.sf.basedb.clients.web.extensions.JspContext"
  import="net.sf.basedb.clients.web.extensions.renderer.PrefixSuffixRenderer"
  import="net.sf.basedb.clients.web.extensions.toolbar.ToolbarUtil"
  import="net.sf.basedb.util.extensions.ExtensionsInvoker"
  import="java.util.ArrayList"
  import="java.util.Collections"
  import="java.util.Date"
  import="java.util.Map"
  import="java.util.Set"
  import="java.util.List"
%>
<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
<%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %>
<%@ taglib prefix="tbl" uri="/WEB-INF/table.tld" %>
<%@ taglib prefix="p" uri="/WEB-INF/path.tld" %>
<%@ taglib prefix="ext" uri="/WEB-INF/extensions.tld" %>
<%!
  private static final Item itemType = Item.EXTRACT;
  private static final GuiContext guiContext = new GuiContext(itemType, GuiContext.Type.ITEM);
%>
<%
final SessionControl sc = Base.getExistingSessionControl(pageContext, true);
final String ID = sc.getId();
final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null);
final int itemId = cc.getId();
final String tab = Values.getString(request.getParameter("tab"), "properties");
final float scale = Base.getScale(sc);
final DbControl dc = sc.newDbControl();
try
{
  Formatter<Date> dateFormatter = FormatterFactory.getDateFormatter(sc);
  Map<Plugin.MainType, Integer> pluginCount = PluginDefinition.countPlugins(dc, guiContext);
  
  WellCoordinateFormatter rowFormatter = new WellCoordinateFormatter(true);
  WellCoordinateFormatter columnFormatter = new WellCoordinateFormatter(false);

  String title = null;
  Extract extract = Extract.getById(dc, itemId);
  BioMaterialEvent creationEvent = extract.getCreationEvent();
  
  final boolean writePermission = extract.hasPermission(Permission.WRITE);
  final boolean deletePermission = extract.hasPermission(Permission.DELETE);
  final boolean sharePermission = extract.hasPermission(Permission.SET_PERMISSION);
  final boolean usePermission = extract.hasPermission(Permission.USE);
  final boolean setOwnerPermission = extract.hasPermission(Permission.SET_OWNER);
  final boolean isRemoved = extract.isRemoved();
  final boolean isUsed = isRemoved && extract.isUsed();
  final boolean deletePermanentlyPermission = deletePermission && !isUsed;
  final boolean isOwner = extract.isOwner();  
  JspContext jspContext = ExtensionsControl.createContext(dc, pageContext, guiContext, extract);
  ExtensionsInvoker invoker = ToolbarUtil.useExtensions(jspContext);
  %>
  <base:page title="<%=title%>">
  <base:head scripts="table.js,tabcontrol.js" styles="table.css,toolbar.css,headertabcontrol.css,path.css">
    <ext:scripts context="<%=jspContext%>" />
    <ext:stylesheets context="<%=jspContext%>" />
    <script language="JavaScript">
    function editItem()
    {
      Main.viewOrEditItem('<%=ID%>', '<%=itemType.name()%>', <%=itemId%>, true);
    }
    function shareItem()
    {
      Main.openPopup('index.jsp?ID=<%=ID%>&cmd=ShareItem&item_id=<%=itemId%>', 'ShareExtract', 600, 400);
    }
    function deleteItem()
    {
      location.replace('index.jsp?ID=<%=ID%>&cmd=DeleteItem&item_id=<%=itemId%>');
    }
    function restoreItem()
    {
      location.replace('index.jsp?ID=<%=ID%>&cmd=RestoreItem&item_id=<%=itemId%>');
    }
    function deleteItemPermanently()
    {
      Main.deleteItemPermanently('<%=ID%>', true, '<%=itemType.name()%>', <%=itemId%>, '&callback=itemDeleted');
    }
    function itemDeleted()
    {
      Main.listItems('<%=ID%>', '<%=itemType.name()%>');
    }
    function showUsingItems()
    {
      Main.showUsingItems('<%=ID%>', '<%=itemType.name()%>', <%=itemId%>);
    }
    function setOwner()
    {
      Main.openPopup('index.jsp?ID=<%=ID%>&cmd=SetOwnerOfItem&item_id=<%=itemId%>', 'SetOwnerOfItem', 450, 150);
    }
    function runPlugin(cmd)
    {
      Main.openPopup('index.jsp?ID=<%=ID%>&cmd='+cmd+'&item_id=<%=itemId%>', 'RunPlugin'+cmd, 740, 540);
    }
    function viewEvents()
    {
      location.href = '../events/index.jsp?ID=<%=ID%>&cmd=List&biomaterial_id=<%=itemId%>&biomaterial_type=<%=itemType.name()%>';
    }
    function switchTab(tabControlId, tabId)
    {
      if (TabControl.isActive(tabControlId, tabId)) return;
      if (tabId == 'overview' && tabId != '<%=tab%>')
      {
        location.href = 'index.jsp?ID=<%=ID%>&cmd=ViewItem&item_id=<%=itemId%>&tab='+tabId;
      }
      else if (tabId == 'events')
      {
        viewEvents();
      }
      else
      {
        TabControl.setActiveTab(tabControlId, tabId);
      }
    }
    function newLabeledExtract()
    {
      Main.viewOrEditItem('<%=ID%>', 'LABELEDEXTRACT', 0, true, '&extract_id=<%=itemId%>')
    }
    </script>
  </base:head>
  <base:body>
    <p>
    <p:path>
      <p:pathelement title="Extracts" href="<%="index.jsp?ID="+ID%>" />
      <p:pathelement title="<%=HTML.encodeTags(extract.getName())%>" />
    </p:path>
    
    <t:tabcontrol id="main" active="<%=tab%>" switch="switchTab" remember="false">
    <t:tab id="properties" title="Properties">

    <tbl:toolbar
      >
      <tbl:button 
        disabled="<%=writePermission ? false : true%>" 
        image="<%=writePermission ? "edit.gif" : "edit_disabled.gif"%>" 
        onclick="editItem()" 
        title="Edit&hellip;" 
        tooltip="<%=writePermission ? "Edit this extract" : "You do not have permission to edit this extract"%>" 
      />
      <tbl:button 
        disabled="<%=deletePermission ? false : true%>" 
        image="<%=deletePermission ? "delete.gif" : "delete_disabled.gif"%>" 
        onclick="deleteItem()" 
        title="Delete"
        visible="<%=!extract.isRemoved()%>"
        tooltip="<%=deletePermission ? "Delete this extract" : "You do not have permission to delete this extract"%>" 
      />
      <tbl:button 
        disabled="<%=writePermission ? false : true%>" 
        image="<%=writePermission ? "restore.gif" : "restore_disabled.gif"%>" 
        onclick="restoreItem()" 
        title="Restore"
        visible="<%=extract.isRemoved()%>"
        tooltip="<%=writePermission ? "Restore this extract" : "You do not have permission to restore this extract"%>" 
      />
      <tbl:button 
        disabled="<%=sharePermission ? false : true%>"
        image="<%=sharePermission ? "share.gif" : "share_disabled.gif"%>"
        onclick="shareItem()" 
        title="Share&hellip;" 
        tooltip="<%=sharePermission ? "Share this extract to other user, groups and projects" : "You do not have permission to share this extract"%>"
      />
      <tbl:button 
        disabled="<%=setOwnerPermission ? false : true%>"
        image="<%=setOwnerPermission ? "take_ownership.png" : "take_ownership_disabled.png"%>"
        onclick="setOwner()" 
        title="Set owner&hellip;"
        tooltip="<%=setOwnerPermission ? "Change owner of this item" : "You do not have permission to change ownership of this item"%>"
      />
      <tbl:button
        image="add.png"
        onclick="newLabeledExtract()"
        title="New labeled extract&hellip;"
        tooltip="Create a new labeled extract from this extract"
        visible="<%=sc.hasPermission(Permission.CREATE, Item.LABELEDEXTRACT) && usePermission %>"
      />
      <tbl:button 
        image="import.gif" 
        onclick="runPlugin('ImportItem')" 
        title="Import&hellip;" 
        tooltip="Import data" 
        visible="<%=pluginCount.containsKey(Plugin.MainType.IMPORT)%>"
      />
      <tbl:button 
        image="export.gif" 
        onclick="runPlugin('ExportItem')" 
        title="Export&hellip;" 
        tooltip="Export data" 
        visible="<%=pluginCount.containsKey(Plugin.MainType.EXPORT)%>"
      />
      <tbl:button 
        image="runplugin.gif" 
        onclick="runPlugin('RunPlugin')" 
        title="Run plugin&hellip;" 
        tooltip="Run a plugin" 
        visible="<%=pluginCount.containsKey(Plugin.MainType.OTHER)%>"
      />
      <ext:render extensions="<%=invoker%>" context="<%=jspContext%>" 
        wrapper="<%=new PrefixSuffixRenderer(jspContext, "<td>", "</td>") %>"/>
      <tbl:button
        image="help.gif"
        onclick="<%="Main.openHelp('" + ID +"', 'extract.view.properties')"%>"
        title="Help&hellip;"
        tooltip="Get help about this page"
      />
      </tbl:toolbar>
    <div class="boxedbottom">
      <div class="itemstatus">Permissions on this item: <i><%=PermissionUtil.getFullPermissionNames(extract)%></i></div>
      <%
      if (extract.isRemoved() || extract.isShared())
      {
        %>
        <div class="itemstatus">
          <base:icon 
            image="<%=deletePermanentlyPermission ? "deleted.gif" : "deleted_disabled.gif"%>"
            onclick="<%=deletePermanentlyPermission ? "deleteItemPermanently()" : null%>"
            tooltip="<%=deletePermanentlyPermission ? "Permanently delete this item" : null%>"
            visible="<%=isRemoved%>"> This item has been flagged for deletion<br></base:icon>
          <base:icon image="used.gif" 
            onclick="showUsingItems()"
            tooltip="Show the items that are using this one"
            visible="<%=isUsed%>"> This item is used by other items and can't be permanently deleted<br></base:icon>
          <base:icon image="shared.gif" 
            visible="<%=extract.isShared()%>"> This item is shared to other users, groups and/or projects</base:icon>
        </div>
        <%
      }
      %>
      <table class="form" cellspacing="0">
      <tr>
        <td class="prompt">Name</td>
        <td><%=HTML.encodeTags(extract.getName())%></td>
      </tr>
      <tr>
        <td class="prompt">External ID</td>
        <td><%=HTML.encodeTags(extract.getExternalId())%></td>
      </tr>
      <tr>
        <td class="prompt">Created</td>
        <td><%=dateFormatter.format(creationEvent.getEventDate())%></td>
      </tr>
      <tr>
        <td class="prompt">Registered</td>
        <td><%=dateFormatter.format(creationEvent.getEntryDate())%></td>
      </tr>
      <%
      if (!extract.isPooled())
      {
        %>
        <tr>
          <td class="prompt">Sample</td>
          <td><base:propertyvalue item="<%=extract%>" property="parent"/> 
            <%
            try
            {
            %>
              <%=extract.getSample() != null ? "(" + Values.formatNumber(creationEvent.getUsedQuantity(extract.getSample()), 2, " µg") + ")" : ""%>
            <%
            }
            catch (PermissionDeniedException ex)
            {}
            %>  

          </td>
        </tr>
        <%
      }
      %>
      <tr>
        <td class="prompt">Protocol</td>
        <td><base:propertyvalue item="<%=creationEvent%>" property="protocol"/></td>
      </tr>
      <tr>
        <td class="prompt">Original quantity</td>
        <td><%=Values.formatNumber(extract.getOriginalQuantity(), 2, " µg")%></td>
      </tr>
      <tr>
        <td class="prompt">Remaining quantity</td>
        <td><%=Values.formatNumber(extract.getRemainingQuantity(), 2, " µg")%></td>
      </tr>
      <tr>
        <td class="prompt">Bioplate</td>
        <td>
          <base:propertyvalue item="<%=extract%>" property="bioWell.bioPlate" />
          <%
          try
          {
            if (extract.getBioWell() != null)
            {
              BioWell bw = extract.getBioWell();
              %>
              [<%=rowFormatter.format(bw.getRow())%>,<%=columnFormatter.format(bw.getColumn())%>]
            <%
            }
          }
          catch (PermissionDeniedException ex)
          {}
          %>
        </td>
      </tr>
      <tr>
        <td class="prompt">Owner</td>
        <td><base:propertyvalue item="<%=extract%>" property="owner"/></td>
      </tr>
      <tr valign="baseline">
        <td class="prompt">Description</td>
        <td><%=HTML.niceFormat(extract.getDescription())%></td>
      </tr>
      </table>
  
      <%
      if (extract.isPooled())
      {
        ItemQuery<Extract> extractsQuery = (ItemQuery<Extract>)creationEvent.getSources();
        extractsQuery.include(Include.ALL);
        extractsQuery.order(Orders.asc(Hql.property("name")));
        ItemResultList<Extract> extracts = extractsQuery.list(dc);
        %>
        <h4 class="docked">Pooled from extracts</h4>
        <tbl:table
          id="pooled"
          clazz="itemlist"
          columns="all"
          >
        <tbl:columndef 
          id="name"
          title="Name"
        />
        <tbl:columndef 
          id="quantity"
          title="Used quantity (µg)"
        />
        <tbl:columndef 
          id="description"
          title="Description"
        />
        <tbl:data>
          <tbl:columns>
          </tbl:columns>
          <tbl:rows>
          <%
          for (Extract item : extracts)
          {
            %>
            <tbl:row>
              <tbl:cell column="name"><base:icon 
                  image="deleted.gif" 
                  tooltip="This item has been scheduled for deletion" 
                  visible="<%=item.isRemoved()%>"
                /><%=Base.getLinkedName(ID, item, false, true)%></tbl:cell>
              <tbl:cell column="quantity"><%=Values.formatNumber(creationEvent.getUsedQuantity(item), 2)%></tbl:cell>
              <tbl:cell column="description"><%=HTML.encodeTags(item.getDescription())%></tbl:cell>
            </tbl:row>
            <%
          }
          %>
          </tbl:rows>
        </tbl:data>
        </tbl:table>
        <%
      }

      // Extracts this item is pooled in.
      ItemQuery<BioMaterialEvent> poolingQuery = extract.getPoolingEvents();
      ItemResultList<BioMaterialEvent> poolingEvents = poolingQuery.list(dc);
      if (poolingEvents.size() == 0)
      {
        %>
        <h4>Pooled in extracts</h4>
        No extracts have been pooled from this extract
        (or, you don't have permission to view them).
        <%
      }
      else
      {
        %>
        <h4 class="docked">Pooled in extracts</h4>
        <tbl:table 
          id="poolChilds"
          clazz="itemlist"
          columns="all"
          >
          <tbl:columndef 
            id="name"
            title="Name"
          />
          <tbl:columndef 
            id="quantity"
            title="Original quantity (µg)"
          />
          <tbl:columndef 
            id="parents"
            title="Used extracts[quantity]" 
          />
          <tbl:columndef 
            id="description"
            title="Description"
          />
          <tbl:data>
            <tbl:columns></tbl:columns>
            <tbl:rows>
            <%
            for (BioMaterialEvent poolEvt : poolingEvents)
            {
              ItemQuery<Extract> extractsQuery = (ItemQuery<Extract>)poolEvt.getSources();
              Extract child = (Extract)poolEvt.getBioMaterial();
              extractsQuery.include(Include.ALL);
              extractsQuery.order(Orders.asc(Hql.property("name")));
              ItemResultList<Extract> parentExtracts = extractsQuery.list(dc);
              %>
              <tbl:row>
                <tbl:cell column="name">
                  <base:icon 
                    image="deleted.gif" 
                    tooltip="This item has been scheduled for deletion" 
                    visible="<%=child.isRemoved()%>"
                  />
                  <%=Base.getLinkedName(ID, child, false, true)%>
                </tbl:cell>
                <tbl:cell column="quantity"><%=Values.formatNumber(child.getOriginalQuantity(), 2)%></tbl:cell>
                <tbl:cell column="parents">
                <%
                String separator = "";
                for (Extract parent : parentExtracts)
                {
                  out.write(separator);
                  if (parent.equals(extract))
                      out.write(HTML.encodeTags(parent.getName()));
                  else                    
                    out.write(Base.getLinkedName(ID, parent, false, true));
                  out.write("[" + Values.formatNumber(poolEvt.getUsedQuantity(parent), 2) + "µg]");
                  separator = ", ";
                }
                %>
                </tbl:cell>
                <tbl:cell column="description"><%=HTML.encodeTags(child.getDescription())%></tbl:cell>
              </tbl:row>
              <%
            }
            %>            
            </tbl:rows>
          </tbl:data>
        </tbl:table>
        <%
      }
        
      ItemQuery<LabeledExtract> labeledExtractQuery = LabeledExtract.getQuery();
      labeledExtractQuery.include(Include.ALL);
      labeledExtractQuery.restrict(Restrictions.eq(Hql.property("parent"), Expressions.parameter("extracts")));
      labeledExtractQuery.setParameter("extracts", itemId, Type.INT);
      labeledExtractQuery.order(Orders.asc(Hql.property("name")));
      ItemResultList<LabeledExtract> labeledExtracts = labeledExtractQuery.list(dc);
      
      if (labeledExtracts.size() == 0)
      {
        %>
        <h4>Labeled extracts</h4>
        No labeled extracts have been created from this extract
        (or you don't have the permission to view them)
        <%
      }
      else
      {
        %>
        <h4 class="docked">Labeled extracts</h4>
        <tbl:table
          id="labeledextracts"
          clazz="itemlist"
          columns="all"
          >
          <tbl:columndef
            id="name"
            title="Name"
          />          
          <tbl:columndef 
            id="quantity"
            title="Used quantity (µg)"
          />
          <tbl:columndef
            id="description"
            title="Description"
          />
          <tbl:data>
            <tbl:columns></tbl:columns>
            <tbl:rows>
              <%
              for (LabeledExtract lbe : labeledExtracts)
              {
                %>
                <tbl:row>
                  <tbl:cell column="name"><base:icon 
                    image="deleted.gif" 
                    tooltip="This item has been scheduled for deletion" 
                    visible="<%=lbe.isRemoved()%>"
                  /><%=Base.getLinkedName(ID, lbe, false, true)%></tbl:cell>
                  <tbl:cell column="quantity"><%=Values.formatNumber(lbe.getCreationEvent().getUsedQuantity(extract), 2)%></tbl:cell>
                  <tbl:cell column="description"><%=HTML.encodeTags(lbe.getDescription())%></tbl:cell>
                </tbl:row>
                <%
              }
              %>
            </tbl:rows>
          </tbl:data>
        </tbl:table>
        <%
      }     
              
      MultiPermissions mp = new MultiPermissions(Collections.singleton(extract));
      ItemResultIterator<User> users = mp.getUsers().iterate(dc);
      ItemResultIterator<Group> groups = mp.getGroups().iterate(dc);
      ItemResultIterator<Project> projects = mp.getProjects().iterate(dc);
      
      if (users.hasNext() || groups.hasNext() || projects.hasNext())
      {
        %>        
        <h4 class="docked">Shared to</h4>
        <tbl:table 
          id="itemsSharedTo"
          clazz="itemlist"
          columns="all"
        >
          <tbl:columndef 
            id="itemType"
            title="Item type"
          />
          <tbl:columndef 
            id="name"
            title="Name"
          />
          <tbl:columndef 
            id="permissions"
            title="Permissions"
          />
          <tbl:data>
            <tbl:columns>
            </tbl:columns>
            <tbl:rows>
            <%
            while(projects.hasNext())
            {
              Project project = projects.next();
              Set<Permission> permissions = mp.getPermissions(project).values().iterator().next();
              %>      
              <tbl:row>
                <tbl:cell column="itemType"><%=project.getType()%></tbl:cell>
                <tbl:cell column="name"><base:icon 
                  image="deleted.gif" 
                  tooltip="This item has been scheduled for deletion" 
                  visible="<%=project.isRemoved()%>"
                /><%=Base.getLinkedName(ID, project, false, true)%></tbl:cell>
                <tbl:cell column="permissions">
                  <%=PermissionUtil.translatePermissionsToString(permissions)%>
                </tbl:cell>
              </tbl:row>
              <%
            }
            while(groups.hasNext())
            {
              Group group = groups.next();
              Set<Permission> permissions = mp.getPermissions(group).values().iterator().next();
              %>
              <tbl:row>             
                <tbl:cell column="itemType"><%=group.getType()%></tbl:cell>
                <tbl:cell column="name"><base:icon 
                  image="deleted.gif" 
                  tooltip="This item has been scheduled for deletion" 
                  visible="<%=group.isRemoved()%>"
                /><%=Base.getLinkedName(ID, group, false, true)%></tbl:cell>
                <tbl:cell column="permissions">
                  <%=PermissionUtil.translatePermissionsToString(permissions)%>
                </tbl:cell>
              </tbl:row>
              <%  
            }
            while (users.hasNext())
            {
              User user = users.next();
              Set<Permission> permissions = mp.getPermissions(user).values().iterator().next();
              %>
              <tbl:row>             
                <tbl:cell column="itemType"><%=user.getType()%></tbl:cell>
                <tbl:cell column="name"><base:icon 
                  image="deleted.gif" 
                  tooltip="This item has been scheduled for deletion" 
                  visible="<%=user.isRemoved()%>"
                /><%=Base.getLinkedName(ID, user, false, true)%></tbl:cell>
                <tbl:cell column="permissions">
                  <%=PermissionUtil.translatePermissionsToString(permissions)%>
                </tbl:cell>
              </tbl:row>
              <%
            }
            %>
            </tbl:rows>
          </tbl:data>
        </tbl:table>
        <%
      }
      else
      {
        %>
        <h4>Shared to</h4>
        This extract is not shared 
        (or, you don't have permission to view the ones it is shared to).       
        <%
      }     
      %>
      
    </div>
      </t:tab>
      
      <t:tab id="annotations" title="Annotations &amp; parameters" 
        tooltip="View annotation values and protocol parameters">
        <div class="boxed">
        <jsp:include page="../../common/annotations/list_annotations.jsp">
          <jsp:param name="item_type" value="<%=itemType.name()%>" />
          <jsp:param name="item_id" value="<%=itemId%>" />
          <jsp:param name="ID" value="<%=ID%>" />
        </jsp:include>
        </div>
      </t:tab>
      
      <t:tab id="events" title="Events" />

      <t:tab id="overview" title="Overview" 
        tooltip="Display a tree overview of related items">
        <%
        if ("overview".equals(tab))
        {
          %>
          <jsp:include page="../../common/overview/overview.jsp">
            <jsp:param name="item_type" value="<%=itemType.name()%>" />
            <jsp:param name="item_id" value="<%=itemId%>" />
            <jsp:param name="ID" value="<%=ID%>" />
          </jsp:include>
          <%
        }
        %>
      </t:tab>
      
      </t:tabcontrol>


  </base:body>
  </base:page>
  <%
}
finally
{
  if (dc != null) dc.close();
}

%>