1 | <%-- $Id: view_extract.jsp 6255 2013-03-22 09:50:51Z nicklas $ |
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2 | ------------------------------------------------------------------ |
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3 | Copyright (C) 2006 Johan Enell, Jari Häkkinen, Nicklas Nordborg, Martin Svensson |
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4 | Copyright (C) 2007 Martin Svensson |
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5 | |
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6 | This file is part of BASE - BioArray Software Environment. |
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7 | Available at http://base.thep.lu.se/ |
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8 | |
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9 | BASE is free software; you can redistribute it and/or |
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10 | modify it under the terms of the GNU General Public License |
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11 | as published by the Free Software Foundation; either version 3 |
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12 | of the License, or (at your option) any later version. |
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13 | |
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14 | BASE is distributed in the hope that it will be useful, |
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15 | but WITHOUT ANY WARRANTY; without even the implied warranty of |
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16 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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17 | GNU General Public License for more details. |
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18 | |
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19 | You should have received a copy of the GNU General Public License |
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20 | along with BASE. If not, see <http://www.gnu.org/licenses/>. |
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21 | ------------------------------------------------------------------ |
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22 | |
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23 | @author Nicklas |
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24 | @version 2.0 |
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25 | --%> |
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26 | <%@ page pageEncoding="UTF-8" session="false" |
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27 | import="net.sf.basedb.core.SessionControl" |
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28 | import="net.sf.basedb.core.DbControl" |
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29 | import="net.sf.basedb.core.SystemItems" |
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30 | import="net.sf.basedb.core.Group" |
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31 | import="net.sf.basedb.core.Item" |
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32 | import="net.sf.basedb.core.CommonItem" |
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33 | import="net.sf.basedb.core.ItemContext" |
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34 | import="net.sf.basedb.core.ItemProxy" |
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35 | import="net.sf.basedb.core.Permission" |
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36 | import="net.sf.basedb.core.Extract" |
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37 | import="net.sf.basedb.core.PhysicalBioAssay" |
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38 | import="net.sf.basedb.core.Sample" |
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39 | import="net.sf.basedb.core.BioMaterial" |
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40 | import="net.sf.basedb.core.BioMaterialEvent" |
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41 | import="net.sf.basedb.core.BioMaterialEventSource" |
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42 | import="net.sf.basedb.core.BioWell" |
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43 | import="net.sf.basedb.core.MultiPermissions" |
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44 | import="net.sf.basedb.core.ItemSubtype" |
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45 | import="net.sf.basedb.core.Protocol" |
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46 | import="net.sf.basedb.core.Project" |
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47 | import="net.sf.basedb.core.User" |
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48 | import="net.sf.basedb.core.ItemQuery" |
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49 | import="net.sf.basedb.core.ItemResultList" |
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50 | import="net.sf.basedb.core.SpecialQuery" |
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51 | import="net.sf.basedb.core.Include" |
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52 | import="net.sf.basedb.core.query.ResultList" |
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53 | import="net.sf.basedb.core.query.Orders" |
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54 | import="net.sf.basedb.core.query.Hql" |
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55 | import="net.sf.basedb.core.query.Restrictions" |
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56 | import="net.sf.basedb.core.query.Expressions" |
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57 | import="net.sf.basedb.core.PermissionDeniedException" |
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58 | import="net.sf.basedb.core.PluginDefinition" |
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59 | import="net.sf.basedb.core.plugin.GuiContext" |
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60 | import="net.sf.basedb.core.plugin.Plugin" |
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61 | import="net.sf.basedb.core.Type" |
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62 | import="net.sf.basedb.clients.web.Base" |
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63 | import="net.sf.basedb.clients.web.ChangeHistoryUtil" |
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64 | import="net.sf.basedb.clients.web.PermissionUtil" |
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65 | import="net.sf.basedb.clients.web.util.HTML" |
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66 | import="net.sf.basedb.util.Values" |
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67 | import="net.sf.basedb.util.formatter.Formatter" |
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68 | import="net.sf.basedb.util.formatter.WellCoordinateFormatter" |
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69 | import="net.sf.basedb.clients.web.formatter.FormatterFactory" |
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70 | import="net.sf.basedb.clients.web.extensions.ExtensionsControl" |
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71 | import="net.sf.basedb.clients.web.extensions.JspContext" |
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72 | import="net.sf.basedb.clients.web.extensions.renderer.PrefixSuffixRenderer" |
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73 | import="net.sf.basedb.clients.web.extensions.toolbar.ToolbarUtil" |
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74 | import="net.sf.basedb.util.extensions.ExtensionsInvoker" |
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75 | import="java.util.ArrayList" |
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76 | import="java.util.Collections" |
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77 | import="java.util.Date" |
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78 | import="java.util.Map" |
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79 | import="java.util.Set" |
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80 | import="java.util.List" |
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81 | %> |
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82 | <%@ taglib prefix="base" uri="/WEB-INF/base.tld" %> |
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83 | <%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %> |
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84 | <%@ taglib prefix="tbl" uri="/WEB-INF/table.tld" %> |
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85 | <%@ taglib prefix="p" uri="/WEB-INF/path.tld" %> |
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86 | <%@ taglib prefix="ext" uri="/WEB-INF/extensions.tld" %> |
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87 | <%! |
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88 | private static final Item itemType = Item.EXTRACT; |
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89 | private static final GuiContext guiContext = new GuiContext(itemType, GuiContext.Type.ITEM); |
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90 | %> |
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91 | <% |
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92 | final SessionControl sc = Base.getExistingSessionControl(pageContext, true); |
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93 | final String ID = sc.getId(); |
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94 | final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null); |
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95 | final int itemId = cc.getId(); |
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96 | final String tab = Values.getString(request.getParameter("tab"), "properties"); |
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97 | final float scale = Base.getScale(sc); |
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98 | final DbControl dc = sc.newDbControl(); |
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99 | try |
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100 | { |
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101 | Formatter<Date> dateFormatter = FormatterFactory.getDateFormatter(sc); |
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102 | Map<Plugin.MainType, Integer> pluginCount = PluginDefinition.countPlugins(dc, guiContext); |
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103 | |
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104 | WellCoordinateFormatter rowFormatter = new WellCoordinateFormatter(true); |
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105 | WellCoordinateFormatter columnFormatter = new WellCoordinateFormatter(false); |
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106 | |
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107 | String title = null; |
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108 | Extract extract = Extract.getById(dc, itemId); |
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109 | BioMaterialEvent creationEvent = extract.getCreationEvent(); |
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110 | |
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111 | final boolean writePermission = extract.hasPermission(Permission.WRITE); |
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112 | final boolean deletePermission = extract.hasPermission(Permission.DELETE); |
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113 | final boolean sharePermission = extract.hasPermission(Permission.SET_PERMISSION); |
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114 | final boolean usePermission = extract.hasPermission(Permission.USE); |
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115 | final boolean setOwnerPermission = extract.hasPermission(Permission.SET_OWNER); |
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116 | final boolean isRemoved = extract.isRemoved(); |
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117 | final boolean isUsed = isRemoved && extract.isUsed(); |
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118 | final boolean deletePermanentlyPermission = deletePermission && !isUsed; |
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119 | final boolean isOwner = extract.isOwner(); |
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120 | JspContext jspContext = ExtensionsControl.createContext(dc, pageContext, guiContext, extract); |
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121 | ExtensionsInvoker invoker = ToolbarUtil.useExtensions(jspContext); |
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122 | %> |
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123 | <base:page title="<%=title%>"> |
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124 | <base:head scripts="table.js,tabcontrol.js" styles="table.css,toolbar.css,headertabcontrol.css,path.css"> |
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125 | <ext:scripts context="<%=jspContext%>" /> |
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126 | <ext:stylesheets context="<%=jspContext%>" /> |
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127 | <script> |
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128 | function editItem() |
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129 | { |
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130 | Main.viewOrEditItem('<%=ID%>', '<%=itemType.name()%>', <%=itemId%>, true); |
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131 | } |
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132 | function newExtract() |
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133 | { |
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134 | Main.viewOrEditItem('<%=ID%>', 'EXTRACT', 0, true, '&extract_id=<%=itemId%>'); |
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135 | } |
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136 | function shareItem() |
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137 | { |
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138 | Main.openPopup('index.jsp?ID=<%=ID%>&cmd=ShareItem&item_id=<%=itemId%>', 'ShareExtract', 600, 400); |
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139 | } |
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140 | function deleteItem() |
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141 | { |
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142 | location.replace('index.jsp?ID=<%=ID%>&cmd=DeleteItem&item_id=<%=itemId%>'); |
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143 | } |
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144 | function restoreItem() |
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145 | { |
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146 | location.replace('index.jsp?ID=<%=ID%>&cmd=RestoreItem&item_id=<%=itemId%>'); |
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147 | } |
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148 | function deleteItemPermanently() |
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149 | { |
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150 | Main.deleteItemPermanently('<%=ID%>', true, '<%=itemType.name()%>', <%=itemId%>, '&callback=itemDeleted'); |
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151 | } |
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152 | function itemDeleted() |
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153 | { |
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154 | Main.listItems('<%=ID%>', '<%=itemType.name()%>'); |
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155 | } |
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156 | function showUsingItems() |
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157 | { |
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158 | Main.showUsingItems('<%=ID%>', '<%=itemType.name()%>', <%=itemId%>); |
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159 | } |
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160 | function setOwner() |
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161 | { |
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162 | Main.openPopup('index.jsp?ID=<%=ID%>&cmd=SetOwnerOfItem&item_id=<%=itemId%>', 'SetOwnerOfItem', 450, 300); |
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163 | } |
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164 | function runPlugin(cmd) |
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165 | { |
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166 | Main.openPopup('index.jsp?ID=<%=ID%>&cmd='+cmd+'&item_id=<%=itemId%>', 'RunPlugin'+cmd, 750, 500); |
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167 | } |
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168 | function viewEvents() |
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169 | { |
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170 | location.href = '../events/index.jsp?ID=<%=ID%>&cmd=List&biomaterial_id=<%=itemId%>&biomaterial_type=<%=itemType.name()%>'; |
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171 | } |
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172 | function switchTab(tabControlId, tabId) |
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173 | { |
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174 | if (TabControl.isActive(tabControlId, tabId)) return; |
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175 | if (tabId == 'events') |
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176 | { |
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177 | viewEvents(); |
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178 | } |
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179 | else |
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180 | { |
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181 | TabControl.setActiveTab(tabControlId, tabId); |
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182 | } |
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183 | } |
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184 | function newPhysicalBioAssay() |
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185 | { |
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186 | Main.viewOrEditItem('<%=ID%>', 'PHYSICALBIOASSAY', 0, true, '&extract_id='+<%=itemId%>); |
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187 | } |
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188 | function newRawBioAssay() |
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189 | { |
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190 | Main.viewOrEditItem('<%=ID%>', 'RAWBIOASSAY', 0, true, '&extract_id='+<%=itemId%>); |
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191 | } |
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192 | </script> |
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193 | </base:head> |
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194 | <base:body> |
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195 | <p:path><p:pathelement |
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196 | title="Extracts" href="<%="index.jsp?ID="+ID%>" /><p:pathelement |
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197 | title="<%=HTML.encodeTags(extract.getName())%>" /></p:path> |
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198 | |
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199 | <t:tabcontrol id="main" subclass="content mastertabcontrol" active="<%=tab%>" switch="switchTab" remember="false"> |
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200 | <t:tab id="properties" title="Properties"> |
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201 | <div> |
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202 | <table class="fullform bottomborder"> |
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203 | <tr> |
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204 | <th class="itemstatus"> |
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205 | <base:icon |
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206 | image="shared.png" |
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207 | visible="<%=extract.isShared()%>" |
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208 | tooltip="This item is shared to other users, groups and/or projects" |
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209 | /> |
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210 | <base:icon |
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211 | image="deleted.png" |
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212 | onclick="deleteItemPermanently()" |
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213 | tooltip="This item has been flagged for deletion. Click to delete it now." |
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214 | enabled="<%=deletePermanentlyPermission %>" |
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215 | visible="<%=isRemoved%>" |
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216 | /> |
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217 | <base:icon image="used.png" |
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218 | onclick="showUsingItems()" |
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219 | tooltip="This item is used by other items and can't be permanently deleted. Show the items that are using this one" |
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220 | visible="<%=isRemoved && isUsed%>" /> |
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221 | </th> |
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222 | <td style="padding: 0px;"> |
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223 | <tbl:toolbar subclass="bottomborder"> |
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224 | <tbl:button |
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225 | disabled="<%=!writePermission%>" |
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226 | image="edit.png" |
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227 | onclick="editItem()" |
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228 | title="Edit…" |
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229 | tooltip="<%=writePermission ? "Edit this extract" : "You do not have permission to edit this extract"%>" |
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230 | /> |
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231 | <tbl:button |
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232 | disabled="<%=!deletePermission%>" |
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233 | image="delete.png" |
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234 | onclick="deleteItem()" |
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235 | title="Delete" |
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236 | visible="<%=!extract.isRemoved()%>" |
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237 | tooltip="<%=deletePermission ? "Delete this extract" : "You do not have permission to delete this extract"%>" |
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238 | /> |
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239 | <tbl:button |
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240 | disabled="<%=!writePermission%>" |
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241 | image="restore.png" |
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242 | onclick="restoreItem()" |
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243 | title="Restore" |
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244 | visible="<%=extract.isRemoved()%>" |
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245 | tooltip="<%=writePermission ? "Restore this extract" : "You do not have permission to restore this extract"%>" |
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246 | /> |
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247 | <tbl:button |
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248 | disabled="<%=!sharePermission%>" |
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249 | image="share.png" |
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250 | onclick="shareItem()" |
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251 | title="Share…" |
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252 | tooltip="<%=sharePermission ? "Share this extract to other user, groups and projects" : "You do not have permission to share this extract"%>" |
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253 | /> |
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254 | <tbl:button |
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255 | disabled="<%=!setOwnerPermission%>" |
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256 | image="take_ownership.png" |
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257 | onclick="setOwner()" |
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258 | title="Set owner…" |
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259 | tooltip="<%=setOwnerPermission ? "Change owner of this item" : "You do not have permission to change ownership of this item"%>" |
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260 | /> |
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261 | <tbl:button |
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262 | image="add.png" |
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263 | onclick="newExtract()" |
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264 | title="New child extract…" |
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265 | tooltip="Create a new child extract from this extract" |
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266 | visible="<%=sc.hasPermission(Permission.CREATE, Item.EXTRACT) && usePermission%>" |
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267 | /> |
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268 | <tbl:button |
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269 | image="add.png" |
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270 | onclick="newPhysicalBioAssay()" |
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271 | title="New physical bioassay…" |
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272 | tooltip="Create a new physical bioassay from this extract" |
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273 | visible="<%=sc.hasPermission(Permission.CREATE, Item.PHYSICALBIOASSAY) && usePermission%>" |
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274 | /> |
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275 | <tbl:button |
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276 | image="add.png" |
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277 | onclick="newRawBioAssay()" |
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278 | title="New raw bioassay…" |
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279 | tooltip="Create a new raw bioassay from this extract" |
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280 | visible="<%=sc.hasPermission(Permission.CREATE, Item.RAWBIOASSAY) && usePermission%>" |
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281 | /> |
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282 | <tbl:button |
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283 | image="import.png" |
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284 | onclick="runPlugin('ImportItem')" |
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285 | title="Import…" |
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286 | tooltip="Import data" |
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287 | visible="<%=pluginCount.containsKey(Plugin.MainType.IMPORT)%>" |
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288 | /> |
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289 | <tbl:button |
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290 | image="export.png" |
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291 | onclick="runPlugin('ExportItem')" |
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292 | title="Export…" |
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293 | tooltip="Export data" |
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294 | visible="<%=pluginCount.containsKey(Plugin.MainType.EXPORT)%>" |
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295 | /> |
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296 | <tbl:button |
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297 | image="runplugin.png" |
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298 | onclick="runPlugin('RunPlugin')" |
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299 | title="Run plugin…" |
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300 | tooltip="Run a plugin" |
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301 | visible="<%=pluginCount.containsKey(Plugin.MainType.OTHER)%>" |
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302 | /> |
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303 | <ext:render extensions="<%=invoker%>" context="<%=jspContext%>" |
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304 | wrapper="<%=new PrefixSuffixRenderer(jspContext, "<td>", "</td>") %>"/> |
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305 | <tbl:button |
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306 | image="help.png" |
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307 | onclick="<%="Main.openHelp('" + ID +"', 'extract.view.properties')"%>" |
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308 | title="Help…" |
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309 | tooltip="Get help about this page" |
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310 | /> |
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311 | </tbl:toolbar> |
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312 | </td> |
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313 | </tr> |
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314 | <tr> |
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315 | <th>Name</th> |
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316 | <td><%=HTML.encodeTags(extract.getName())%></td> |
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317 | </tr> |
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318 | <tr> |
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319 | <th>Type</th> |
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320 | <td><base:propertyvalue item="<%=extract%>" property="itemSubtype" /></td> |
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321 | </tr> |
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322 | <tr> |
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323 | <th>External ID</th> |
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324 | <td><%=HTML.encodeTags(extract.getExternalId())%></td> |
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325 | </tr> |
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326 | <tr> |
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327 | <th>Created</th> |
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328 | <td><%=dateFormatter.format(creationEvent.getEventDate())%></td> |
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329 | </tr> |
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330 | <tr> |
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331 | <th>Registered</th> |
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332 | <td><%=dateFormatter.format(creationEvent.getEntryDate())%></td> |
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333 | </tr> |
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334 | <tr> |
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335 | <th>Tag</th> |
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336 | <td><base:propertyvalue item="<%=extract%>" property="tag"/></td> |
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337 | </tr> |
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338 | <tr> |
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339 | <th>Protocol</th> |
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340 | <td><base:propertyvalue item="<%=creationEvent%>" property="protocol"/></td> |
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341 | </tr> |
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342 | <tr> |
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343 | <th>Original quantity</th> |
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344 | <td><%=Values.formatNumber(extract.getOriginalQuantity(), 2, " µg")%></td> |
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345 | </tr> |
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346 | <tr> |
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347 | <th class="subprompt">- remaining</th> |
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348 | <td><%=Values.formatNumber(extract.getRemainingQuantity(), 2, " µg")%></td> |
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349 | </tr> |
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350 | <tr> |
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351 | <th>Bioplate</th> |
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352 | <td> |
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353 | <base:propertyvalue item="<%=extract%>" property="bioWell.bioPlate" /> |
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354 | <% |
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355 | try |
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356 | { |
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357 | BioWell well = extract.getBioWell(); |
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358 | if (well != null) |
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359 | { |
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360 | %> |
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361 | [<%=rowFormatter.format(well.getRow())%><%=columnFormatter.format(well.getColumn())%>] |
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362 | <base:icon image="locked.png" visible="<%=extract.isLockedInWell()%>"/> |
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363 | <% |
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364 | } |
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365 | } |
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366 | catch (PermissionDeniedException ex) |
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367 | {} |
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368 | %> |
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369 | </td> |
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370 | </tr> |
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371 | <tr> |
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372 | <th>Owner</th> |
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373 | <td><base:propertyvalue item="<%=extract%>" property="owner"/></td> |
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374 | </tr> |
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375 | <tr> |
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376 | <th>Permissions</th> |
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377 | <td><%=PermissionUtil.getFullPermissionNames(extract)%></td> |
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378 | </tr> |
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379 | <tr> |
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380 | <th>Description</th> |
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381 | <td><%=HTML.niceFormat(extract.getDescription())%></td> |
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382 | </tr> |
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383 | </table> |
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384 | </div> |
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385 | |
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386 | <% |
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387 | SpecialQuery<BioMaterialEventSource> sourceQuery = creationEvent.getEventSources(); |
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388 | sourceQuery.order(Orders.asc(Hql.property("bioMaterial.name"))); |
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389 | ResultList<BioMaterialEventSource> sources = sourceQuery.list(dc); |
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390 | %> |
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391 | <base:section |
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392 | id="parentsSection" |
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393 | title="<%="Parent items (" + sources.size() + ")"%>" |
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394 | context="<%=cc%>" |
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395 | > |
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396 | <% |
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397 | if (sources.size() == 0) |
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398 | { |
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399 | %> |
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400 | <div class="messagecontainer note"> |
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401 | This extract doesn't have any parent items |
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402 | (or, you don't have permission to view them). |
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403 | </div> |
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404 | <% |
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405 | } |
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406 | else |
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407 | { |
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408 | %> |
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409 | <tbl:table |
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410 | id="parents" |
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411 | columns="all" |
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412 | > |
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413 | <tbl:columndef |
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414 | id="name" |
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415 | title="Name" |
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416 | /> |
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417 | <tbl:columndef |
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418 | id="type" |
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419 | title="Type" |
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420 | /> |
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421 | <tbl:columndef |
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422 | id="quantity" |
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423 | title="Used quantity (µg)" |
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424 | /> |
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425 | <tbl:columndef |
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426 | id="description" |
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427 | title="Description" |
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428 | /> |
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429 | <tbl:data> |
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430 | <tbl:headers> |
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431 | <tbl:headerrow> |
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432 | <tbl:columnheaders /> |
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433 | </tbl:headerrow> |
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434 | </tbl:headers> |
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435 | <tbl:rows> |
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436 | <% |
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437 | for (BioMaterialEventSource item : sources) |
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438 | { |
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439 | BioMaterial bm = null; |
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440 | ItemSubtype subtype = null; |
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441 | try |
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442 | { |
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443 | bm = item.getBioMaterial(); |
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444 | subtype = bm.getItemSubtype(); |
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445 | } |
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446 | catch (PermissionDeniedException ex) |
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447 | {} |
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448 | %> |
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449 | <tbl:row> |
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450 | <tbl:cell column="name"><base:icon |
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451 | image="deleted.png" |
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452 | tooltip="This item has been scheduled for deletion" |
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453 | visible="<%=bm != null && bm.isRemoved()%>" |
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454 | /><%=Base.getLinkedName(ID, bm, bm == null, true)%></tbl:cell> |
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455 | <tbl:cell column="type"> |
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456 | <% |
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457 | if (subtype != null) |
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458 | { |
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459 | %> |
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460 | <%=Base.getLinkedName(ID, subtype, false, true)%> <span class="itemsubtype">(<%=bm.getType() %>)</span> |
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461 | <% |
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462 | } |
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463 | else |
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464 | { |
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465 | %> |
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466 | <%=bm != null ? bm.getType() : "" %> |
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467 | <% |
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468 | } |
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469 | %> |
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470 | </tbl:cell> |
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471 | <tbl:cell column="quantity"><%=Values.formatNumber(item.getUsedQuantity(), 2)%></tbl:cell> |
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472 | <tbl:cell column="description"><%=HTML.encodeTags(bm == null ? "" : bm.getDescription())%></tbl:cell> |
---|
473 | </tbl:row> |
---|
474 | <% |
---|
475 | } |
---|
476 | %> |
---|
477 | </tbl:rows> |
---|
478 | </tbl:data> |
---|
479 | </tbl:table> |
---|
480 | <% |
---|
481 | } |
---|
482 | %> |
---|
483 | </base:section> |
---|
484 | <% |
---|
485 | SpecialQuery<BioMaterialEventSource> childQuery = extract.getChildCreationEvents(); |
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486 | childQuery.join(Hql.innerJoin("es", "event", "evt", true)); |
---|
487 | childQuery.join(Hql.leftJoin("evt", "bioMaterial", "bm", null, true)); |
---|
488 | childQuery.join(Hql.leftJoin("evt", "physicalBioAssay", "pba", null, true)); |
---|
489 | childQuery.order(Orders.asc(Hql.property("pba", "name"))); |
---|
490 | childQuery.order(Orders.asc(Hql.property("bm", "name"))); |
---|
491 | ResultList<BioMaterialEventSource> children = childQuery.list(dc); |
---|
492 | %> |
---|
493 | <base:section |
---|
494 | id="childSection" |
---|
495 | title="<%="Child items (" + children.size() + ")"%>" |
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496 | context="<%=cc%>" |
---|
497 | > |
---|
498 | <% |
---|
499 | if (children.size() == 0) |
---|
500 | { |
---|
501 | %> |
---|
502 | <div class="messagecontainer note"> |
---|
503 | No child items have been created from this extract |
---|
504 | (or, you don't have permission to view them). |
---|
505 | </div> |
---|
506 | <% |
---|
507 | } |
---|
508 | else |
---|
509 | { |
---|
510 | %> |
---|
511 | <tbl:table |
---|
512 | id="children" |
---|
513 | columns="all" |
---|
514 | > |
---|
515 | <tbl:columndef |
---|
516 | id="name" |
---|
517 | title="Name" |
---|
518 | /> |
---|
519 | <tbl:columndef |
---|
520 | id="type" |
---|
521 | title="Type" |
---|
522 | /> |
---|
523 | <tbl:columndef |
---|
524 | id="quantity" |
---|
525 | title="Used quantity (µg)" |
---|
526 | /> |
---|
527 | <tbl:columndef |
---|
528 | id="description" |
---|
529 | title="Description" |
---|
530 | /> |
---|
531 | <tbl:data> |
---|
532 | <tbl:headers> |
---|
533 | <tbl:headerrow> |
---|
534 | <tbl:columnheaders /> |
---|
535 | </tbl:headerrow> |
---|
536 | </tbl:headers> |
---|
537 | <tbl:rows> |
---|
538 | <% |
---|
539 | for (BioMaterialEventSource item : children) |
---|
540 | { |
---|
541 | CommonItem child = null; |
---|
542 | ItemSubtype subtype = null; |
---|
543 | try |
---|
544 | { |
---|
545 | BioMaterialEvent evt = item.getEvent(); |
---|
546 | if (evt.getEventType() == BioMaterialEvent.Type.BIOASSAY) |
---|
547 | { |
---|
548 | PhysicalBioAssay bioAssay = evt.getPhysicalBioAssay(); |
---|
549 | subtype = bioAssay.getItemSubtype(); |
---|
550 | child = bioAssay; |
---|
551 | } |
---|
552 | else |
---|
553 | { |
---|
554 | BioMaterial bm = evt.getBioMaterial(); |
---|
555 | subtype = bm.getItemSubtype(); |
---|
556 | child = bm; |
---|
557 | } |
---|
558 | } |
---|
559 | catch (PermissionDeniedException ex) |
---|
560 | {} |
---|
561 | %> |
---|
562 | <tbl:row> |
---|
563 | <tbl:cell column="name"><base:icon |
---|
564 | image="deleted.png" |
---|
565 | tooltip="This item has been scheduled for deletion" |
---|
566 | visible="<%=child != null && child.isRemoved()%>" |
---|
567 | /><%=Base.getLinkedName(ID, child, child == null, true)%></tbl:cell> |
---|
568 | <tbl:cell column="type"> |
---|
569 | <% |
---|
570 | if (subtype != null) |
---|
571 | { |
---|
572 | %> |
---|
573 | <%=Base.getLinkedName(ID, subtype, false, true)%> <span class="itemsubtype">(<%=child.getType() %>)</span> |
---|
574 | <% |
---|
575 | } |
---|
576 | else |
---|
577 | { |
---|
578 | %> |
---|
579 | <%=child != null ? child.getType() : "" %> |
---|
580 | <% |
---|
581 | } |
---|
582 | %> |
---|
583 | </tbl:cell> |
---|
584 | <tbl:cell column="quantity"><%=Values.formatNumber(item.getUsedQuantity(), 2)%></tbl:cell> |
---|
585 | <tbl:cell column="description"><%=HTML.encodeTags(child == null ? "" : child.getDescription())%></tbl:cell> |
---|
586 | </tbl:row> |
---|
587 | <% |
---|
588 | } |
---|
589 | %> |
---|
590 | </tbl:rows> |
---|
591 | </tbl:data> |
---|
592 | </tbl:table> |
---|
593 | <% |
---|
594 | } |
---|
595 | %> |
---|
596 | </base:section> |
---|
597 | <jsp:include page="../../common/anytoany/list_anytoany.jsp"> |
---|
598 | <jsp:param name="ID" value="<%=ID%>" /> |
---|
599 | <jsp:param name="item_type" value="<%=itemType.name()%>" /> |
---|
600 | <jsp:param name="item_id" value="<%=itemId%>" /> |
---|
601 | <jsp:param name="title" value="Other items related to this extract" /> |
---|
602 | </jsp:include> |
---|
603 | <jsp:include page="../../common/share/list_share.jsp"> |
---|
604 | <jsp:param name="ID" value="<%=ID%>" /> |
---|
605 | <jsp:param name="item_type" value="<%=itemType.name()%>" /> |
---|
606 | <jsp:param name="item_id" value="<%=itemId%>" /> |
---|
607 | <jsp:param name="title" value="Shared to" /> |
---|
608 | </jsp:include> |
---|
609 | </t:tab> |
---|
610 | |
---|
611 | <t:tab id="annotations" title="Annotations & parameters" |
---|
612 | tooltip="View annotation values and protocol parameters" clazz="white" |
---|
613 | activate="AnnotationsList.loadOnce()"> |
---|
614 | <jsp:include page="../../common/annotations/list_frameset.jsp"> |
---|
615 | <jsp:param name="item_type" value="<%=itemType.name()%>" /> |
---|
616 | <jsp:param name="item_id" value="<%=itemId%>" /> |
---|
617 | <jsp:param name="ID" value="<%=ID%>" /> |
---|
618 | </jsp:include> |
---|
619 | </t:tab> |
---|
620 | |
---|
621 | <t:tab id="events" title="Events" /> |
---|
622 | |
---|
623 | <t:tab id="overview" title="Overview" |
---|
624 | tooltip="Display a tree overview of related items" |
---|
625 | activate="Overview.loadOnce()"> |
---|
626 | <jsp:include page="../../common/overview/overview.jsp"> |
---|
627 | <jsp:param name="item_type" value="<%=itemType.name()%>" /> |
---|
628 | <jsp:param name="item_id" value="<%=itemId%>" /> |
---|
629 | <jsp:param name="ID" value="<%=ID%>" /> |
---|
630 | </jsp:include> |
---|
631 | </t:tab> |
---|
632 | <t:tab id="history" title="Change history" |
---|
633 | tooltip="Displays a log of all modifications made to this item" |
---|
634 | visible="<%=ChangeHistoryUtil.showChangeHistoryTab(sc)%>" |
---|
635 | activate="History.loadOnce()"> |
---|
636 | <jsp:include page="../../common/history/frameset.jsp"> |
---|
637 | <jsp:param name="item_type" value="<%=itemType.name()%>" /> |
---|
638 | <jsp:param name="item_id" value="<%=itemId%>" /> |
---|
639 | <jsp:param name="ID" value="<%=ID%>" /> |
---|
640 | </jsp:include> |
---|
641 | </t:tab> |
---|
642 | </t:tabcontrol> |
---|
643 | |
---|
644 | |
---|
645 | </base:body> |
---|
646 | </base:page> |
---|
647 | <% |
---|
648 | } |
---|
649 | finally |
---|
650 | { |
---|
651 | if (dc != null) dc.close(); |
---|
652 | } |
---|
653 | |
---|
654 | %> |
---|