source: trunk/www/common/overview/tree.jsp @ 7316

<%-- $Id: tree.jsp 7316 2017-03-30 07:05:33Z nicklas $
  ------------------------------------------------------------------
  Copyright (C) 2009 Nicklas Nordborg

  This file is part of BASE - BioArray Software Environment.
  Available at http://base.thep.lu.se/

  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
  as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.

  BASE is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with BASE. If not, see <http://www.gnu.org/licenses/>.
  ------------------------------------------------------------------
--%>
<%@ page pageEncoding="UTF-8" session="false"
  import="net.sf.basedb.core.SessionControl"
  import="net.sf.basedb.core.DbControl"
  import="net.sf.basedb.core.Project"
  import="net.sf.basedb.core.Item"
  import="net.sf.basedb.core.BasicItem"
  import="net.sf.basedb.core.Annotation"
  import="net.sf.basedb.core.AnnotationType"
  import="net.sf.basedb.core.ItemSubtype"
  import="net.sf.basedb.core.Nameable"
  import="net.sf.basedb.core.Subtypable"
  import="net.sf.basedb.core.BioPlateType"
  import="net.sf.basedb.core.BioPlate"
  import="net.sf.basedb.core.RawDataType"
  import="net.sf.basedb.core.RawBioAssay"
  import="net.sf.basedb.core.ItemContext"
  import="net.sf.basedb.core.Permission"
  import="net.sf.basedb.clients.web.Base"
  import="net.sf.basedb.clients.web.util.HTML"
  import="net.sf.basedb.util.Values"
  import="net.sf.basedb.util.overview.GenericOverview"
  import="net.sf.basedb.util.overview.OverviewUtil"
  import="net.sf.basedb.util.overview.Node"
  import="net.sf.basedb.util.overview.ValidationOptions"
  import="org.json.simple.JSONArray"
  import="org.json.simple.JSONObject"
  import="java.util.Arrays"
  import="java.util.HashSet"
  import="java.util.Set"
  import="java.util.List"
%>
<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
<%!
Set<Item> collapsedChildNodes = new HashSet<Item>(
    Arrays.asList(Item.SAMPLE, Item.EXTRACT, Item.PHYSICALBIOASSAY, Item.DERIVEDBIOASSAY, Item.RAWBIOASSAY)
  );

void generateSubTree(DbControl dc, Node startNode, JSONObject jsonParent, boolean showFailures)
{
  
  List<Node> children = startNode.getChildren();
  if (children == null) return;
  
  for (Node child : children)
  {
    if (child.getNodeType() == Node.Type.FOLDER && child.numChildren() == 1)
    {
      Node child2 = child.getChildren().get(0);
      if (collapsedChildNodes.contains(child2.getItemType())) child = child2;
    }
    
    int errors = child.getNumErrors();
    int warnings = child.getNumWarnings();
    int childErrors = child.getChildErrors();
    int childWarnings = child.getChildWarnings();

    String folderIcon = child.getNodeType() == Node.Type.FOLDER ? "Folder" : "Item";
    String tooltip = "";
    if (child.getItemType() == Item.ANNOTATIONTYPE)
    {
      if (startNode.getItemType() == Item.PROTOCOL)
      {
        folderIcon = "ProtocolParameter";
      }
      else
      {
        try
        {
          AnnotationType at = (AnnotationType)child.getItem(dc);
          if (at.isProtocolParameter()) folderIcon = "ProtocolParameter";
        }
        catch (Throwable t)
        {}
      }
    }
    else if (child.getItemType() == Item.ANNOTATION)
    {
      folderIcon = "Annotation";
      try
      {
        AnnotationType at = ((Annotation)child.getItem(dc)).getAnnotationType();
        if (at.isProtocolParameter()) folderIcon = "ProtocolParameter";
      }
      catch (Throwable t)
      {}
    }
    
    if (showFailures)
    {
      if (errors > 0)
      {
        folderIcon += "Error";
      }
      else if (warnings > 0)
      {
        folderIcon += "Warning";
      }
      else if (childErrors > 0)
      {
        folderIcon += "ChildError";
      }
      else if (childWarnings > 0)
      {
        folderIcon += "ChildWarning";
      }     
      if (warnings > 0 && errors > 0)
      {
        tooltip += errors + " error(s); " + warnings + " warning(s) on this item";
      }
      else if (errors > 0)
      {
        tooltip += errors + " error(s) on this item";
      }
      else if (warnings > 0)
      {
        tooltip += warnings + " warning(s) on this item";
      }
      if (childErrors > 0 && childWarnings > 0)
      {
        if (tooltip.length() > 0) tooltip += "; ";
        tooltip += childErrors + " error(s); " + childWarnings + " warning(s) on child items";
      }
      else if (childErrors > 0)
      {
        if (tooltip.length() > 0) tooltip += "; ";
        tooltip += childErrors + " error(s) on child items";
      }
      else if (childWarnings > 0)
      {
        if (tooltip.length() > 0) tooltip += "; ";
        tooltip += childWarnings + " warning(s) on child items";
      }
    }
    int numChildren = child.getChildren() == null ? 0 : child.getChildren().size();
    String subtitle = null;
    if (child.getNodeType() == Node.Type.FOLDER)
    {
      subtitle = child.getChildren() == null ? "0" : Integer.toString(child.getChildren().size());
    }
    else if (child.getItem() instanceof Subtypable)
    {
      try
      {
        ItemSubtype subtype = ((Subtypable)child.getItem(dc)).getItemSubtype();
        if (subtype != null) subtitle = subtype.getName();
      }
      catch (Throwable t)
      {}
    }
    else if (child.getItem() instanceof BioPlate)
    {
      try
      {
        BioPlateType plateType = ((BioPlate)child.getItem(dc)).getBioPlateType();
        if (plateType != null) subtitle = plateType.getName();
      }
      catch (Throwable t)
      {}
    }
    else if (child.getItem() instanceof RawBioAssay)
    {
      RawDataType rawDataType = ((RawBioAssay)child.getItem(dc)).getRawDataType();
      subtitle = rawDataType.getName();
    }
    
    String text = HTML.encodeTags(child.getTitle()) + (subtitle != null ? " <span class=\"subtitle\">(" + subtitle + ")</span>" : "");
    JSONObject jsonChild = newJoustEntry(jsonParent, folderIcon, text, child.getId());
    jsonChild.put("tooltip", tooltip);
    
    if (!child.isChildrenLoaded())
    {
      jsonChild.put("isLazy", 1);
    }
    generateSubTree(dc, child, jsonChild, showFailures);
  }
}


JSONObject newJoustEntry(JSONObject jsonParent, String icon, String text, String id)
{
  JSONObject jsonJoust = new JSONObject();
  jsonJoust.put("icon", icon);
  jsonJoust.put("text", text);
  jsonJoust.put("id", id);
  if (jsonParent != null)
  {
    JSONArray jsonChildren = (JSONArray)jsonParent.get("children");
    if (jsonChildren == null)
    {
      jsonChildren = new JSONArray();
      jsonParent.put("children", jsonChildren);
    }
    jsonChildren.add(jsonJoust);
  }
  return jsonJoust;
}

%>
<%
final SessionControl sc = Base.getExistingSessionControl(pageContext, true);
final String ID = sc.getId();
final float scale = Base.getScale(sc);
final DbControl dc = sc.newDbControl();
try
{
  GenericOverview overview = OverviewUtil.getCurrentOverview(sc);
  boolean showFailures = Values.getBoolean(request.getParameter("show_failures"), false);
  Node rootNode = overview.getRootNode();
  Nameable rootItem = (Nameable)rootNode.getItem(dc);
  String subtitle = null;
  if (rootItem instanceof Subtypable)
  {
    try
    {
      ItemSubtype subtype = ((Subtypable)rootItem).getItemSubtype();
      if (subtype != null) subtitle = subtype.getName();
    }
    catch (Throwable t)
    {}
  }
  String rootIcon = "Home";
  if (showFailures)
  {
    if (rootNode.getNumErrors() > 0 || rootNode.getChildErrors() > 0)
    {
      rootIcon = "Error";
    }
    else if (rootNode.getNumWarnings() > 0 || rootNode.getChildWarnings() > 0)
    {
      rootIcon = "Warning";
    }
  }
  
  // Build the Joust menu tree
  JSONArray jsonJoust = new JSONArray();
  JSONObject jsonRoot = newJoustEntry(null, rootIcon, HTML.encodeTags(rootItem.getName())+ (subtitle != null ? " <span class=\"subtitle\">(" + subtitle + ")</span>" : ""), rootNode.getId());
  jsonRoot.put("isOpen", 1);
  jsonRoot.put("noOutlineIcon", 1);
  
  generateSubTree(dc, rootNode, jsonRoot, showFailures);
  jsonJoust.add(jsonRoot);
  %>
  <base:page title="" type="iframe">
  <base:head scripts="joust-2.js,dragdrop.js,~tree.js" styles="joust-2.css">
  <style>
  .subtitle 
  {
    font-size: 0.85em;
    color: #666666;
  }
  .selected .subtitle 
  {
    color: #E8E8E8;
  }
  </style>
  
  </base:head>
    <base:body>
    <div id="page-data" class="datacontainer"
      data-show-failures="<%=showFailures ? 1 : 0 %>"
    ></div>
    <div id="main" class="joust absolutefull auto-init" data-auto-init="drag-support">
      <div id="joust" class="joust absolutefull" 
        data-joust-tree="<%=HTML.encodeTags(jsonJoust.toJSONString()) %>"
        style="overflow: auto;">
      </div>
    </div>
    </base:body>
  </base:page>
  <%
}
finally
{
  if (dc != null) dc.close();
}
%>