source: trunk/www/lims/arraybatches/edit_batch.jsp @ 5687

<%-- $Id: edit_batch.jsp 5687 2011-08-09 11:39:40Z nicklas $
  ------------------------------------------------------------------
  Copyright (C) 2006 Jari Häkkinen, Nicklas Nordborg, Martin Svensson

  This file is part of BASE - BioArray Software Environment.
  Available at http://base.thep.lu.se/

  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
  as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.

  BASE is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with BASE. If not, see <http://www.gnu.org/licenses/>.
  ------------------------------------------------------------------


  @author Nicklas
  @version 2.0
--%>
<%@ page pageEncoding="UTF-8" session="false"
  import="net.sf.basedb.core.SessionControl"
  import="net.sf.basedb.core.DbControl"
  import="net.sf.basedb.core.Item"
  import="net.sf.basedb.core.ItemContext"
  import="net.sf.basedb.core.SystemItems"
  import="net.sf.basedb.core.Permission"
  import="net.sf.basedb.core.Include"
  import="net.sf.basedb.core.ArrayBatch"
  import="net.sf.basedb.core.ArrayDesign"
  import="net.sf.basedb.core.Protocol"
  import="net.sf.basedb.core.ItemSubtype"
  import="net.sf.basedb.core.Project"
  import="net.sf.basedb.core.Hardware"
  import="net.sf.basedb.core.ItemQuery"
  import="net.sf.basedb.core.ItemResultList"
  import="net.sf.basedb.core.PermissionDeniedException"
  import="net.sf.basedb.core.BaseException"
  import="net.sf.basedb.core.query.Orders"
  import="net.sf.basedb.core.query.Hql"
  import="net.sf.basedb.clients.web.Base"
  import="net.sf.basedb.clients.web.util.HTML"
  import="net.sf.basedb.util.Values"
  import="net.sf.basedb.core.plugin.GuiContext"
  import="net.sf.basedb.clients.web.extensions.ExtensionsControl"
  import="net.sf.basedb.clients.web.extensions.JspContext"
  import="net.sf.basedb.clients.web.extensions.edit.EditUtil"
  import="net.sf.basedb.util.extensions.ExtensionsInvoker"
  import="java.util.List"
  import="java.util.Set"
  import="java.util.HashSet"
  import="java.util.Date"
%>
<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
<%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %>
<%
final Item itemType = Item.ARRAYBATCH;
final SessionControl sc = Base.getExistingSessionControl(pageContext, true);
final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null);
final int itemId = cc.getId();
final String ID = sc.getId();
final float scale = Base.getScale(sc);
final DbControl dc = sc.newDbControl();
try
{
  String title = null;
  ArrayBatch batch = null;
  
  boolean readCurrentArrayDesign = true;
  ArrayDesign currentArrayDesign = null;
  List<ArrayDesign> defaultArrayDesigns = null;
  boolean readCurrentProtocol = true;
  Protocol currentProtocol = null;
  List<Protocol> defaultProtocols = null;
  boolean readCurrentPrintRobot = true;
  Hardware currentPrintRobot = null;
  List<Hardware> defaultPrintRobots = null;

  // Load recently used items
  List<ArrayDesign> recentArrayDesigns = (List<ArrayDesign>)cc.getRecent(dc, Item.ARRAYDESIGN);
  List<Protocol> recentProtocols = (List<Protocol>)cc.getRecent(dc, Item.PROTOCOL);
  List<Hardware> recentPrintRobots = (List<Hardware>)cc.getRecent(dc, Item.HARDWARE);
  
  int activeProjectId = sc.getActiveProjectId();
  if (activeProjectId > 0)
  {
    Project activeProject = Project.getById(dc, activeProjectId);
    try
    {
      defaultArrayDesigns = (List<ArrayDesign>)activeProject.findDefaultItems(dc, Item.ARRAYDESIGN, true);
    }
    catch (PermissionDeniedException pdex)
    {}
    try
    {
      defaultProtocols = (List<Protocol>)activeProject.findDefaultItems(dc, 
          ItemSubtype.getById(dc, SystemItems.getId(Protocol.PRINTING)), false);
    }
    catch (PermissionDeniedException pdex)
    {}
    try
    {
      defaultPrintRobots = (List<Hardware>)activeProject.findDefaultItems(dc, 
          ItemSubtype.getById(dc, SystemItems.getId(Hardware.PRINT_ROBOT)), false);
    }
    catch (PermissionDeniedException pdex)
    {}
  }
  if (itemId == 0)
  {
    title = "Create array batch";
    cc.removeObject("item");
    int arrayDesignId = Values.getInt(request.getParameter("arraydesign_id"));
    if (arrayDesignId != 0)
    {
      currentArrayDesign = ArrayDesign.getById(dc, arrayDesignId);
    }
    else if (cc.getPropertyFilter("arrayDesign.name") != null)
    {
      currentArrayDesign = Base.getFirstMatching(dc, ArrayDesign.getQuery(), "name", cc.getPropertyFilter("arrayDesign.name"));
    }
    if (cc.getPropertyFilter("printRobot.name") != null)
    {
      currentPrintRobot = Base.getFirstMatching(dc, Hardware.getQuery(), "name", cc.getPropertyFilter("printRobot.name"));
    }
    if (cc.getPropertyFilter("protocol.name") != null)
    {
      currentProtocol = Base.getFirstMatching(dc, Protocol.getQuery(), "name", cc.getPropertyFilter("protocol.name"));
    }
  }
  else
  {
    batch = ArrayBatch.getById(dc, itemId);
    cc.setObject("item", batch);
    title = "Edit array batch -- " + HTML.encodeTags(batch.getName());
    try
    {
      currentArrayDesign = batch.getArrayDesign();
    }
    catch (PermissionDeniedException ex)
    {
      readCurrentArrayDesign = false;
    }
    try
    {
      currentPrintRobot = batch.getPrintRobot();      
    }
    catch (PermissionDeniedException ex)
    {
      readCurrentPrintRobot = false;
    }
    try
    {
      currentProtocol = batch.getProtocol();      
    }
    catch (PermissionDeniedException ex)
    {
      readCurrentProtocol = false;
    }
  }
  if (batch != null && !batch.hasPermission(Permission.WRITE))
  {
    throw new PermissionDeniedException(Permission.WRITE, itemType.toString());
  }
  final String clazz = "class=\"text\"";
  final String requiredClazz = "class=\"text required\"";
  JspContext jspContext = ExtensionsControl.createContext(dc, pageContext, GuiContext.item(itemType), batch);
  ExtensionsInvoker invoker = EditUtil.useEditExtensions(jspContext);
  %>
  <base:page type="popup" title="<%=title%>">
  <base:head scripts="tabcontrol.js,annotations.js" styles="tabcontrol.css">
    <ext:scripts context="<%=jspContext%>" />
    <ext:stylesheets context="<%=jspContext%>" />
    <script language="JavaScript">
    // Validate the "ArrayBatch" tab
    function validateArrayBatch()
    {
      var frm = document.forms['batch'];
      if (Main.trimString(frm.name.value) == '')
      {
        alert("You must enter a name");
        frm.name.focus();
        return false;
      }
      if (frm.arraydesign_id && frm.arraydesign_id[frm.arraydesign_id.selectedIndex].value == 0)
      {
        alert("You must select an array design");
        return false;
      }
      return true;
    }

    // Submit the form
    function saveSettings()
    {
      var frm = document.forms['batch'];
      if (TabControl.validateActiveTab('settings'))
      {
        if (annotationsLoaded) 
        {
          Annotations.addModifiedAnnotationsToForm(frames.annotations, frm);
        }
        if (inheritedAnnotationsLoaded)
        {
          Annotations.addInheritedAnnotationsToForm(frames.inheritedAnnotations, frm);
        }
        frm.submit();
      }
    }
    
    var annotationsLoaded = false;
    var inheritedAnnotationsLoaded = false;
    var parentsChanged = false;
    var protocolChanged = false;
    function switchTab(tabControlId, tabId)
    {
      if (TabControl.setActiveTab(tabControlId, tabId))
      {
        if (tabId == 'annotations' && (protocolChanged || !annotationsLoaded))
        {
          Annotations.loadAnnotateFrame(frames.annotations, '<%=ID%>', '<%=itemType.name()%>', <%=batch == null ? 0 : batch.getId()%>, getProtocolId());
          annotationsLoaded = true;
          protocolChanged = false;
        }
        else if (tabId == 'inheritedAnnotations' && 
          (parentsChanged || !inheritedAnnotationsLoaded))
        {
          Annotations.loadInheritFrame(frames.inheritedAnnotations, '<%=ID%>', '<%=itemType.name()%>', <%=itemId%>, getParents());
          inheritedAnnotationsLoaded = true;
          parentsChanged = false;
        }
      }
    }
    
    function getProtocolId()
    {
      var frm = document.forms['batch'];
      var protocolId = 0;
      if (frm.protocol_id.length > 0 && !frm.protocol_id.disabled) 
      {
        protocolId = Math.abs(parseInt(frm.protocol_id[frm.protocol_id.selectedIndex].value));        
      }
      return protocolId;
    }

    function getParents()
    {
      var frm = document.forms['batch'];
      var parents = new Array();
      if (frm.arraydesign_id)
      {
        var arrayDesignId = Math.abs(parseInt(frm.arraydesign_id[frm.arraydesign_id.selectedIndex].value));
        if (arrayDesignId > 0) parents[parents.length] = 'ARRAYDESIGN:'+arrayDesignId;
      }
      return parents;
    }

    function arrayDesignOnChange()
    {
      parentsChanged = true;
    }
    function selectArrayDesignOnClick()
    {
      var frm = document.forms['batch'];
      var url = '../../lims/arraydesigns/index.jsp?ID=<%=ID%>&cmd=UpdateContext&mode=selectone&callback=setArrayDesignCallback';
      if (frm.arraydesign_id.length > 0) 
      {
        var id = Math.abs(parseInt(frm.arraydesign_id[0].value));       
        url += '&item_id='+id;
      }
      Main.openPopup(url, 'SelectArrayDesign', 1000, 700);
    }
    function setArrayDesignCallback(id, name)
    {
      var frm = document.forms['batch'];
      var list = frm.arraydesign_id;
      if (list.length < 1 || list[0].value == '0') // >
      {
        Forms.addListOption(list, 0, new Option());
      }
      list[0].value = id;
      list[0].text = name;
      list.selectedIndex = 0;
      parentsChanged = true;
    }

    function selectProtocolOnClick()
    {
      var frm = document.forms['batch'];
      var url = '../../admin/protocols/index.jsp?ID=<%=ID%>&cmd=UpdateContext&mode=selectone&callback=setProtocolCallback';
      if (frm.protocol_id.length > 1) 
      {
        var id = Math.abs(parseInt(frm.protocol_id[1].value));        
        url += '&item_id='+id;
      }
      url += '&resetTemporary=1&tmpfilter:INT:itemSubtype=<%=SystemItems.getId(Protocol.PRINTING)%>';
      Main.openPopup(url, 'SelectProtocol', 1000, 700);
    }
    function setProtocolCallback(id, name)
    {
      var frm = document.forms['batch'];
      var list = frm.protocol_id;
      if (list.length < 2 || list[1].value == '0') // >
      {
        Forms.addListOption(list, 1, new Option());
      }
      list[1].value = id;
      list[1].text = name;
      list.selectedIndex = 1;
      protocolChanged = true;
    }
    function protocolOnChange()
    {
      protocolChanged = true;
    }

    function selectPrintRobotOnClick()
    {
      var frm = document.forms['batch'];
      var url = '../../admin/hardware/index.jsp?ID=<%=ID%>&cmd=UpdateContext&mode=selectone&callback=setPrintRobotCallback';
      if (frm.printrobot_id.length > 1) 
      {
        var id = Math.abs(parseInt(frm.printrobot_id[1].value));        
        url += '&item_id='+id;
      }
      url += '&resetTemporary=1&tmpfilter:INT:itemSubtype=<%=SystemItems.getId(Hardware.PRINT_ROBOT)%>';
      Main.openPopup(url, 'SelectPrintRobot', 1000, 700);
    }
    function setPrintRobotCallback(id, name)
    {
      var frm = document.forms['batch'];
      var list = frm.printrobot_id;
      if (list.length < 2 || list[1].value == '0') // >
      {
        Forms.addListOption(list, 1, new Option());
      }
      list[1].value = id;
      list[1].text = name;
      list.selectedIndex = 1;
    }

    
    function init()
    {
      var frm = document.forms['batch'];
      <%
      if (batch == null)
      {
        %>
        frm.name.focus();
        frm.name.select();
        <%
      }
      %>
    }
    </script>
  </base:head>
  <base:body onload="init()">
    <p>
    <form action="index.jsp?ID=<%=ID%>" method="post" name="batch" onsubmit="return false;">
    <input type="hidden" name="cmd" value="UpdateItem">

    <h3 class="docked"><%=title%> <base:help tabcontrol="settings" /></h3>
    <t:tabcontrol id="settings" contentstyle="<%="height: "+(int)(scale*370)+"px;"%>" 
      position="bottom"  remember="<%=batch != null%>" switch="switchTab"
      extensions="<%=invoker%>">
    <t:tab id="info" title="Array batch" validate="validateArrayBatch()" helpid="arraybatch.edit">
      <table class="form" cellspacing=0>
      <tr>
        <td class="prompt">Name</td>
        <td><input <%=requiredClazz%> type="text" name="name" 
          value="<%=HTML.encodeTags(batch == null ? Values.getString(cc.getPropertyValue("name"), "New array batch") : batch.getName())%>" 
          size="40" maxlength="<%=ArrayBatch.MAX_NAME_LENGTH%>"></td>
      </tr>
      <tr>
        <td class="prompt">Array design</td>
        <td>
          <%
          if (batch != null)
          {
            %>
            <%=Base.getEncodedName(currentArrayDesign, !readCurrentArrayDesign)%>
            <%
          }
          else
          {
            %>
            <base:select 
              id="arraydesign_id"
              clazz="selectionlist required"
              required="true"
              current="<%=currentArrayDesign%>"
              denied="<%=!readCurrentArrayDesign%>"
              recent="<%=recentArrayDesigns%>"
              defaultitems="<%=defaultArrayDesigns%>"
              newitem="true"
              onselect="selectArrayDesignOnClick()"
              onchange="arrayDesignOnChange()"
            />
            <%
          }
          %>
        </td>
      </tr>
      <tr>
        <td class="prompt">Print robot</td>
        <td>
          <base:select 
            id="printrobot_id"
            clazz="selectionlist"
            required="false"
            current="<%=currentPrintRobot%>"
            denied="<%=!readCurrentPrintRobot%>"
            recent="<%=recentPrintRobots%>"
            defaultitems="<%=defaultPrintRobots%>"
            newitem="<%=batch == null%>"
            onselect="selectPrintRobotOnClick()"
          />
        </td>
      </tr>
      <tr>
        <td class="prompt">Protocol</td>
        <td>
          <base:select 
            id="protocol_id"
            clazz="selectionlist"
            required="false"
            current="<%=currentProtocol%>"
            denied="<%=!readCurrentProtocol%>"
            recent="<%=recentProtocols%>"
            defaultitems="<%=defaultProtocols%>"
            newitem="<%=batch == null%>"
            onselect="selectProtocolOnClick()"
            onchange="protocolOnChange()"
          />
        </td>
      </tr>
      <tr valign=top>
        <td class="prompt">Description</td>
        <td nowrap>
          <textarea <%=clazz%> rows="4" cols="40" name="description" wrap="virtual"
            ><%=HTML.encodeTags(batch == null ? cc.getPropertyValue("description") : batch.getDescription())%></textarea>
          <a href="javascript:Main.zoom('Description', 'batch', 'description')"
            title="Edit in larger window"><base:icon image="zoom.gif" /></a>
        </td>
      </tr>
      </table>
      <div align=right>&nbsp;<i><base:icon image="required.gif" /> = required information</i></div>
    </t:tab>
    
    <t:tab id="annotations" title="Annotations &amp; parameters" 
      helpid="annotations.edit" tooltip="Enter values for annotations and protocol parameters">
      <iframe name="annotations" id="idAnnotations" src="../../common/annotations/wait.jsp" 
        width="100%"  height="<%=(int)(scale*370)%>" frameborder=0 vspace=0 hspace=0
        marginwidth=0 marginheight=0 scrolling="auto" style="overflow: visible"></iframe>
    </t:tab>
    
    <t:tab id="inheritedAnnotations" title="Inherited annotations" helpid="annotations.edit.inherited">
    
      <iframe name="inheritedAnnotations" id="idInheritedAnnotations" src="../../common/annotations/wait.jsp" 
        width="100%"  height="<%=(int)(scale*370)%>" frameborder=0 vspace=0 hspace=0
        marginwidth=0 marginheight=0 scrolling="auto" style="overflow: visible"></iframe>
    </t:tab>
    </t:tabcontrol>

    <table align="center">
    <tr>
      <td width="50%"><base:button onclick="saveSettings()" title="Save" /></td>
      <td width="50%"><base:button onclick="window.close()" title="Cancel" /></td>
    </tr>
    </table>
    </form>
  </base:body>
  </base:page>
  <%
}
finally
{
  if (dc != null) dc.close();
}
%>