1 | <%-- $Id: list_features.jsp 4302 2008-05-19 12:07:25Z nicklas $ |
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2 | ------------------------------------------------------------------ |
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3 | Copyright (C) 2006 Johan Enell, Jari Hakkinen, Nicklas Nordborg, Martin Svensson |
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4 | Copyright (C) 2007 Johan Enell, Nicklas Nordborg |
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5 | |
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6 | This file is part of BASE - BioArray Software Environment. |
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7 | Available at http://base.thep.lu.se/ |
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8 | |
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9 | BASE is free software; you can redistribute it and/or |
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10 | modify it under the terms of the GNU General Public License |
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11 | as published by the Free Software Foundation; either version 2 |
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12 | of the License, or (at your option) any later version. |
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13 | |
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14 | BASE is distributed in the hope that it will be useful, |
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15 | but WITHOUT ANY WARRANTY; without even the implied warranty of |
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16 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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17 | GNU General Public License for more details. |
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18 | |
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19 | You should have received a copy of the GNU General Public License |
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20 | along with this program; if not, write to the Free Software |
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21 | Foundation, Inc., 59 Temple Place - Suite 330, |
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22 | Boston, MA 02111-1307, USA. |
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23 | ------------------------------------------------------------------ |
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24 | |
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25 | @author Nicklas |
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26 | @version 2.0 |
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27 | --%> |
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28 | <%@ page session="false" |
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29 | import="net.sf.basedb.core.SessionControl" |
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30 | import="net.sf.basedb.core.DbControl" |
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31 | import="net.sf.basedb.core.Item" |
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32 | import="net.sf.basedb.core.ItemContext" |
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33 | import="net.sf.basedb.core.data.FeatureData" |
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34 | import="net.sf.basedb.core.data.ReporterData" |
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35 | import="net.sf.basedb.core.ArrayDesign" |
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36 | import="net.sf.basedb.core.ArrayDesignBlock" |
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37 | import="net.sf.basedb.core.Feature" |
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38 | import="net.sf.basedb.core.FeatureIdentificationMethod" |
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39 | import="net.sf.basedb.core.ReporterType" |
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40 | import="net.sf.basedb.core.Reporter" |
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41 | import="net.sf.basedb.core.Well" |
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42 | import="net.sf.basedb.core.ItemQuery" |
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43 | import="net.sf.basedb.core.DataQuery" |
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44 | import="net.sf.basedb.core.DataResultIterator" |
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45 | import="net.sf.basedb.core.ItemResultList" |
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46 | import="net.sf.basedb.core.Permission" |
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47 | import="net.sf.basedb.core.PluginDefinition" |
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48 | import="net.sf.basedb.core.PermissionDeniedException" |
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49 | import="net.sf.basedb.core.ExtendedProperty" |
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50 | import="net.sf.basedb.core.ExtendedProperties" |
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51 | import="net.sf.basedb.core.query.Restrictions" |
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52 | import="net.sf.basedb.core.query.Expressions" |
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53 | import="net.sf.basedb.core.query.Orders" |
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54 | import="net.sf.basedb.core.query.Hql" |
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55 | import="net.sf.basedb.core.plugin.GuiContext" |
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56 | import="net.sf.basedb.core.plugin.Plugin" |
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57 | import="net.sf.basedb.util.Enumeration" |
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58 | import="net.sf.basedb.clients.web.Base" |
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59 | import="net.sf.basedb.clients.web.ModeInfo" |
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60 | import="net.sf.basedb.clients.web.util.HTML" |
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61 | import="net.sf.basedb.util.Values" |
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62 | import="net.sf.basedb.util.formatter.Formatter" |
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63 | import="net.sf.basedb.clients.web.formatter.FormatterFactory" |
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64 | import="java.util.List" |
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65 | import="java.util.Map" |
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66 | import="java.util.Date" |
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67 | %> |
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68 | <%@ taglib prefix="base" uri="/WEB-INF/base.tld" %> |
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69 | <%@ taglib prefix="tbl" uri="/WEB-INF/table.tld" %> |
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70 | <%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %> |
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71 | <%@ taglib prefix="p" uri="/WEB-INF/path.tld" %> |
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72 | <%! |
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73 | private static final Item itemType = Item.FEATURE; |
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74 | private static final GuiContext guiContext = new GuiContext(itemType, GuiContext.Type.LIST); |
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75 | %> |
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76 | <% |
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77 | final int arrayDesignId = Values.getInt(request.getParameter("arraydesign_id")); |
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78 | final SessionControl sc = Base.getExistingSessionControl(pageContext, Permission.DENIED, itemType); |
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79 | final String ID = sc.getId(); |
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80 | final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null); |
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81 | |
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82 | final ModeInfo mode = ModeInfo.get(request.getParameter("mode")); |
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83 | final String callback = request.getParameter("callback"); |
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84 | final String title = mode.generateTitle("feature", "features"); |
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85 | final DbControl dc = sc.newDbControl(); |
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86 | DataResultIterator<FeatureData> features = null; |
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87 | try |
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88 | { |
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89 | final ArrayDesign design = ArrayDesign.getById(dc, arrayDesignId); |
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90 | final boolean isAffy = design.isAffyChip(); |
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91 | final FeatureIdentificationMethod fiMethod = design.getFeatureIdentificationMethod(); |
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92 | Formatter<Date> dateFormatter = FormatterFactory.getDateTimeFormatter(sc); |
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93 | |
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94 | final DataQuery<FeatureData> query = design.getFeatures(); |
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95 | |
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96 | Map<Plugin.MainType, Integer> pluginCount = PluginDefinition.countPlugins(dc, guiContext); |
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97 | final ItemQuery<ReporterType> typeQuery = ReporterType.getQuery(); |
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98 | typeQuery.order(Orders.asc(Hql.property("name"))); |
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99 | typeQuery.setCacheResult(true); |
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100 | |
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101 | List<ExtendedProperty> reporterProperties = ExtendedProperties.getProperties("ReporterData"); |
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102 | |
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103 | try |
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104 | { |
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105 | query.join(Hql.leftJoin(null, "reporter", "rpt", null, false)); |
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106 | cc.configureQuery(dc, query, true); |
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107 | if (!"row".equals(cc.getSortProperty())) query.order(Orders.asc(Hql.property("row"))); |
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108 | if (!"column".equals(cc.getSortProperty())) query.order(Orders.asc(Hql.property("column"))); |
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109 | features = query.iterate(dc); |
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110 | } |
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111 | catch (Throwable t) |
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112 | { |
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113 | cc.setMessage(t.getMessage()); |
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114 | } |
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115 | int numListed = 0; |
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116 | %> |
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117 | <base:page title="<%=title%>"> |
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118 | <base:head scripts="table.js,tabcontrol.js" styles="table.css,headertabcontrol.css,path.css"> |
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119 | <script language="JavaScript"> |
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120 | var submitPage = 'index.jsp'; |
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121 | var formId = 'features'; |
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122 | function viewItem(itemId) |
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123 | { |
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124 | Main.viewOrEditItem('<%=ID%>', '<%=itemType.name()%>', itemId, false, '&arraydesign_id=<%=arrayDesignId%>'); |
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125 | } |
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126 | function itemOnClick(evt, itemId) |
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127 | { |
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128 | viewItem(itemId); |
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129 | } |
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130 | function configureColumns() |
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131 | { |
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132 | Table.configureColumns('<%=ID%>', formId, '<%=itemType.name()%>', '<%=(String)cc.getObject("defaultColumns")%>'); |
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133 | } |
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134 | function runPlugin(cmd) |
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135 | { |
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136 | Table.submitToPopup(formId, cmd, 540, 460); |
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137 | } |
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138 | function returnSelected() |
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139 | { |
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140 | Table.returnSelected(formId, <%=callback != null ? "window.opener."+callback : "null" %>); |
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141 | window.close(); |
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142 | } |
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143 | function presetOnChange() |
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144 | { |
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145 | Table.presetOnChange('<%=ID%>', formId, '<%=itemType.name()%>', '<%=(String)cc.getObject("defaultColumns")%>'); |
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146 | } |
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147 | function switchTab(tabControlId, tabId) |
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148 | { |
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149 | if (tabId == 'properties' || tabId == 'annotations') |
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150 | { |
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151 | location.href = '../index.jsp?ID=<%=ID%>&cmd=ViewItem&item_id=<%=arrayDesignId%>&tab='+tabId; |
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152 | } |
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153 | else |
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154 | { |
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155 | TabControl.setActiveTab(tabControlId, tabId); |
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156 | } |
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157 | } |
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158 | </script> |
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159 | </base:head> |
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160 | |
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161 | <base:body> |
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162 | <p> |
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163 | <p:path> |
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164 | <p:pathelement title="Array designs" href="<%="../index.jsp?ID="+ID%>" /> |
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165 | <p:pathelement title="<%=HTML.encodeTags(design.getName())%>" /> |
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166 | </p:path> |
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167 | |
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168 | <t:tabcontrol id="main" active="images" switch="switchTab"> |
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169 | <t:tab id="properties" title="Properties" /> |
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170 | <t:tab id="annotations" title="Annotations" /> |
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171 | |
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172 | <t:tab id="images" title="Features"> |
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173 | |
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174 | <% |
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175 | if (cc.getMessage() != null) |
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176 | { |
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177 | %> |
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178 | <div class="error"><%=cc.getMessage()%></div> |
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179 | <% |
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180 | cc.setMessage(null); |
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181 | } |
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182 | %> |
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183 | <tbl:table |
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184 | id="features" |
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185 | clazz="itemlist" |
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186 | columns="<%=cc.getSetting("columns")%>" |
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187 | sortby="<%=cc.getSortProperty()%>" |
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188 | direction="<%=cc.getSortDirection()%>" |
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189 | title="<%=title%>" |
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190 | action="index.jsp" |
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191 | sc="<%=sc%>" |
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192 | item="<%=itemType%>" |
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193 | > |
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194 | <tbl:hidden |
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195 | name="mode" |
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196 | value="<%=mode.getName()%>" |
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197 | /> |
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198 | <tbl:hidden |
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199 | name="arraydesign_id" |
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200 | value="<%=String.valueOf(arrayDesignId)%>" |
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201 | /> |
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202 | <tbl:hidden |
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203 | name="callback" |
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204 | value="<%=callback%>" |
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205 | skip="<%=callback == null%>" |
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206 | /> |
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207 | <tbl:columndef |
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208 | id="position" |
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209 | property="position" |
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210 | datatype="int" |
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211 | title="Position" |
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212 | sortable="true" |
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213 | filterable="true" |
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214 | exportable="true" |
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215 | show="<%=fiMethod == FeatureIdentificationMethod.FEATURE_ID ? "auto" : "always"%>" |
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216 | /> |
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217 | <tbl:columndef |
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218 | id="externalId" |
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219 | property="externalId" |
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220 | datatype="string" |
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221 | title="Feature ID" |
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222 | sortable="true" |
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223 | filterable="true" |
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224 | exportable="true" |
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225 | show="<%=fiMethod == FeatureIdentificationMethod.FEATURE_ID ? "always" : "auto"%>" |
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226 | /> |
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227 | <tbl:columndef |
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228 | id="block" |
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229 | property="arrayDesignBlock.blockNumber" |
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230 | datatype="int" |
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231 | title="Block" |
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232 | sortable="true" |
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233 | filterable="true" |
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234 | exportable="true" |
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235 | /> |
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236 | <tbl:columndef |
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237 | id="metaGridX" |
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238 | property="arrayDesignBlock.metaGridX" |
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239 | datatype="int" |
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240 | title="Meta grid X" |
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241 | sortable="true" |
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242 | filterable="true" |
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243 | exportable="true" |
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244 | /> |
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245 | <tbl:columndef |
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246 | id="metaGridY" |
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247 | property="arrayDesignBlock.metaGridY" |
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248 | datatype="int" |
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249 | title="Meta grid Y" |
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250 | sortable="true" |
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251 | filterable="true" |
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252 | exportable="true" |
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253 | /> |
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254 | <tbl:columndef |
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255 | id="row" |
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256 | property="row" |
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257 | datatype="int" |
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258 | title="Row" |
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259 | sortable="true" |
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260 | filterable="true" |
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261 | exportable="true" |
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262 | /> |
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263 | <tbl:columndef |
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264 | id="column" |
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265 | property="column" |
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266 | datatype="int" |
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267 | title="Column" |
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268 | sortable="true" |
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269 | filterable="true" |
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270 | exportable="true" |
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271 | /> |
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272 | <tbl:columndef |
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273 | id="blockSizeX" |
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274 | property="arrayDesignBlock.blockSizeX" |
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275 | datatype="int" |
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276 | title="Block size X" |
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277 | sortable="true" |
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278 | filterable="true" |
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279 | exportable="true" |
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280 | /> |
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281 | <tbl:columndef |
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282 | id="blockSizeY" |
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283 | property="arrayDesignBlock.blockSizeY" |
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284 | datatype="int" |
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285 | title="Block size Y" |
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286 | sortable="true" |
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287 | filterable="true" |
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288 | exportable="true" |
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289 | /> |
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290 | <tbl:columndef |
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291 | id="originX" |
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292 | property="arrayDesignBlock.originX" |
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293 | datatype="int" |
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294 | title="Origin X" |
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295 | sortable="true" |
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296 | filterable="true" |
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297 | exportable="true" |
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298 | /> |
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299 | <tbl:columndef |
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300 | id="originY" |
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301 | property="arrayDesignBlock.originY" |
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302 | datatype="int" |
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303 | title="Origin Y" |
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304 | sortable="true" |
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305 | filterable="true" |
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306 | exportable="true" |
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307 | /> |
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308 | <tbl:columndef |
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309 | id="spacingX" |
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310 | property="arrayDesignBlock.spacingX" |
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311 | datatype="int" |
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312 | title="Spacing X" |
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313 | sortable="true" |
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314 | filterable="true" |
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315 | exportable="true" |
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316 | /> |
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317 | <tbl:columndef |
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318 | id="spacingY" |
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319 | property="arrayDesignBlock.spacingY" |
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320 | datatype="int" |
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321 | title="Spacing Y" |
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322 | sortable="true" |
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323 | filterable="true" |
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324 | exportable="true" |
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325 | /> |
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326 | <tbl:columndef |
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327 | id="diameter" |
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328 | property="arrayDesignBlock.featureDiameter" |
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329 | datatype="int" |
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330 | title="Diameter" |
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331 | sortable="true" |
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332 | filterable="true" |
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333 | exportable="true" |
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334 | /> |
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335 | <tbl:columndef |
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336 | id="reporterList" |
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337 | property="$rpt.£reporterListScores" |
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338 | datatype="int" |
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339 | title="[Rep] Reporter list" |
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340 | filterable="true" |
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341 | enumeration="<%=Base.getReporterListsEnum(dc)%>" |
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342 | multiple="false" |
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343 | /> |
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344 | <tbl:columndef |
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345 | id="reporter.name" |
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346 | property="reporter.name" |
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347 | datatype="string" |
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348 | title="[Rep] Name" |
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349 | sortable="true" |
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350 | filterable="true" |
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351 | exportable="true" |
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352 | /> |
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353 | <tbl:columndef |
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354 | id="reporter.externalId" |
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355 | property="reporter.externalId" |
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356 | datatype="string" |
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357 | title="[Rep] ID" |
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358 | sortable="true" |
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359 | filterable="true" |
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360 | exportable="true" |
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361 | /> |
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362 | <tbl:columndef |
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363 | id="reporter.symbol" |
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364 | property="reporter.symbol" |
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365 | datatype="string" |
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366 | title="[Rep] Gene symbol" |
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367 | sortable="true" |
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368 | filterable="true" |
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369 | exportable="true" |
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370 | /> |
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371 | <tbl:columndef |
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372 | id="reporter.description" |
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373 | property="reporter.description" |
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374 | datatype="string" |
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375 | title="[Rep] Description" |
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376 | sortable="true" |
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377 | filterable="true" |
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378 | exportable="true" |
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379 | /> |
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380 | <tbl:columndef |
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381 | id="reporter.lastUpdate" |
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382 | property="reporter.lastUpdate" |
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383 | datatype="date" |
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384 | title="[Rep] Last update" |
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385 | sortable="true" |
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386 | filterable="true" |
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387 | exportable="true" |
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388 | formatter="<%=dateFormatter%>" |
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389 | /> |
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390 | <% |
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391 | Enumeration<String, String> types = new Enumeration<String, String>(); |
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392 | ItemResultList<ReporterType> reporterTypes = typeQuery.list(dc); |
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393 | types.add("", "- none -"); |
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394 | for (ReporterType rt : reporterTypes) |
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395 | { |
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396 | types.add(Integer.toString(rt.getId()), HTML.encodeTags(rt.getName())); |
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397 | } |
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398 | %> |
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399 | <tbl:columndef |
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400 | id="reporter.reporterType" |
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401 | property="reporter.reporterType" |
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402 | sortproperty="reporter.reporterType.name" |
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403 | exportproperty="reporter.reporterType.name" |
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404 | datatype="int" |
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405 | enumeration="<%=types%>" |
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406 | title="[Rep] Type" |
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407 | sortable="true" |
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408 | filterable="true" |
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409 | exportable="true" |
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410 | /> |
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411 | <% |
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412 | if (reporterProperties != null) |
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413 | { |
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414 | for (ExtendedProperty ep : reporterProperties) |
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415 | { |
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416 | String name = ep.getName(); |
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417 | %> |
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418 | <tbl:columndef |
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419 | id="<%="reporter."+name%>" |
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420 | property="<%="reporter."+name%>" |
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421 | datatype="<%=ep.getType().getStringValue()%>" |
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422 | title="<%="[Rep] "+HTML.encodeTags(ep.getTitle())%>" |
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423 | sortable="true" |
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424 | filterable="true" |
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425 | exportable="true" |
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426 | formatter="<%=FormatterFactory.getExtendedPropertyFormatter(sc, ep)%>" |
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427 | /> |
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428 | <% |
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429 | } |
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430 | } |
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431 | %> |
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432 | <tbl:columndef |
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433 | id="well.row" |
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434 | property="well.row" |
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435 | datatype="int" |
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436 | title="[Well] Row" |
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437 | sortable="true" |
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438 | filterable="true" |
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439 | exportable="true" |
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440 | /> |
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441 | <tbl:columndef |
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442 | id="well.column" |
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443 | property="well.column" |
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444 | datatype="int" |
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445 | title="[Well] Column" |
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446 | sortable="true" |
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447 | filterable="true" |
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448 | exportable="true" |
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449 | /> |
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450 | <tbl:columndef |
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451 | id="well.plate" |
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452 | property="well.plate.name" |
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453 | datatype="string" |
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454 | title="[Well] Plate" |
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455 | sortable="true" |
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456 | filterable="true" |
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457 | exportable="true" |
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458 | /> |
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459 | <tbl:toolbar |
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460 | visible="<%=mode.hasToolbar()%>" |
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461 | > |
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462 | <tbl:button |
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463 | image="columns.gif" |
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464 | onclick="configureColumns()" |
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465 | title="Columns…" |
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466 | tooltip="Show, hide and re-order columns" |
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467 | /> |
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468 | <tbl:button |
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469 | image="import.gif" |
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470 | onclick="runPlugin('ImportItems')" |
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471 | title="Import…" |
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472 | tooltip="Import data" |
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473 | visible="<%=pluginCount.containsKey(Plugin.MainType.IMPORT)%>" |
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474 | /> |
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475 | <tbl:button |
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476 | image="export.gif" |
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477 | onclick="runPlugin('ExportItems')" |
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478 | title="Export…" |
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479 | tooltip="Export data" |
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480 | visible="<%=pluginCount.containsKey(Plugin.MainType.EXPORT)%>" |
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481 | /> |
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482 | <tbl:button |
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483 | image="runplugin.gif" |
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484 | onclick="runPlugin('RunListPlugin')" |
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485 | title="Run plugin…" |
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486 | tooltip="Run a plugin" |
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487 | visible="<%=pluginCount.containsKey(Plugin.MainType.OTHER)%>" |
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488 | /> |
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489 | </tbl:toolbar> |
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490 | <tbl:navigator |
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491 | page="<%=cc.getPage()%>" |
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492 | rowsperpage="<%=cc.getRowsPerPage()%>" |
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493 | totalrows="<%=features == null ? 0 : features.getTotalCount()%>" |
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494 | visible="<%=mode.hasNavigator()%>" |
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495 | /> |
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496 | <tbl:data> |
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497 | <tbl:columns> |
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498 | <tbl:presetselector |
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499 | clazz="columnheader" |
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500 | colspan="3" |
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501 | onchange="presetOnChange()" |
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502 | /> |
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503 | </tbl:columns> |
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504 | |
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505 | <tr> |
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506 | <tbl:header |
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507 | clazz="index" |
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508 | > </tbl:header> |
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509 | <tbl:header |
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510 | clazz="check" |
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511 | visible="<%=mode.hasCheck()%>" |
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512 | ><base:icon |
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513 | image="check_uncheck.gif" |
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514 | tooltip="Check/uncheck all" |
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515 | onclick="Forms.checkUncheck(document.forms[formId])" style="align: left;" |
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516 | /></tbl:header> |
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517 | <tbl:header |
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518 | clazz="check" |
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519 | visible="<%=mode.hasRadio()%>" |
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520 | /> |
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521 | <tbl:header |
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522 | clazz="icons" |
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523 | visible="<%=mode.hasIcons()%>" |
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524 | > </tbl:header> |
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525 | <tbl:propertyfilter /> |
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526 | </tr> |
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527 | |
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528 | <tbl:rows> |
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529 | <% |
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530 | int index = cc.getPage()*cc.getRowsPerPage(); |
---|
531 | int selectedItemId = Values.getInt(request.getParameter("item_id")); |
---|
532 | if (features != null) |
---|
533 | { |
---|
534 | String tooltip = mode.isSelectionMode() ? |
---|
535 | "Select this item" : "View this item"; |
---|
536 | while (features.hasNext()) |
---|
537 | { |
---|
538 | FeatureData item = features.next(); |
---|
539 | ArrayDesignBlock block = Feature.getArrayDesignBlock(dc, item); |
---|
540 | int itemId = item.getId(); |
---|
541 | index++; |
---|
542 | numListed++; |
---|
543 | %> |
---|
544 | <tbl:row> |
---|
545 | <tbl:header |
---|
546 | clazz="index" |
---|
547 | ><%=index%></tbl:header> |
---|
548 | <tbl:header |
---|
549 | clazz="check" |
---|
550 | visible="<%=mode.hasCheck()%>" |
---|
551 | ><input |
---|
552 | type="checkbox" |
---|
553 | name="<%=itemId%>" |
---|
554 | value="<%=itemId%>" |
---|
555 | title="TODO" |
---|
556 | <%=request.getParameter(Integer.toString(itemId)) == null ? "" : "checked"%> |
---|
557 | ></tbl:header> |
---|
558 | <tbl:header |
---|
559 | clazz="check" |
---|
560 | visible="<%=mode.hasRadio()%>" |
---|
561 | ><input |
---|
562 | type="radio" |
---|
563 | name="item_id" |
---|
564 | value="<%=itemId%>" |
---|
565 | title="TODO" |
---|
566 | <%=selectedItemId == itemId ? "checked" : ""%> |
---|
567 | ></tbl:header> |
---|
568 | <tbl:header |
---|
569 | clazz="icons" |
---|
570 | visible="<%=mode.hasIcons()%>" |
---|
571 | ></tbl:header> |
---|
572 | <tbl:cell column="position"><div class="link" onclick="itemOnClick(event, <%=itemId%>)" |
---|
573 | title="<%=tooltip%>"><%=item.getPosition()%></div></tbl:cell> |
---|
574 | <tbl:cell column="externalId"><div class="link" onclick="itemOnClick(event, <%=itemId%>)" |
---|
575 | title="<%=tooltip%>"><%=HTML.encodeTags(item.getExternalId())%></div></tbl:cell> |
---|
576 | <tbl:cell column="block"><%=block.getBlockNumber()%></tbl:cell> |
---|
577 | <tbl:cell column="row"><%=item.getRow()%></tbl:cell> |
---|
578 | <tbl:cell column="column"><%=item.getColumn()%></tbl:cell> |
---|
579 | <tbl:cell column="metaGridX"><%=block.getMetaGridX()%></tbl:cell> |
---|
580 | <tbl:cell column="metaGridY"><%=block.getMetaGridY()%></tbl:cell> |
---|
581 | <tbl:cell column="blockSizeX"><%=block.getBlockSizeX()%></tbl:cell> |
---|
582 | <tbl:cell column="blockSizeY"><%=block.getBlockSizeY()%></tbl:cell> |
---|
583 | <tbl:cell column="originX"><%=block.getOriginX()%></tbl:cell> |
---|
584 | <tbl:cell column="originY"><%=block.getOriginY()%></tbl:cell> |
---|
585 | <tbl:cell column="spacingX"><%=block.getSpacingX()%></tbl:cell> |
---|
586 | <tbl:cell column="spacingY"><%=block.getSpacingY()%></tbl:cell> |
---|
587 | <tbl:cell column="diameter"><%=block.getFeatureDiameter()%></tbl:cell> |
---|
588 | <% |
---|
589 | ReporterData reporter = item.getReporter(); |
---|
590 | if (reporter == null) |
---|
591 | { |
---|
592 | %> |
---|
593 | <tbl:cell column="reporter.name"><i>- none -</i></tbl:cell> |
---|
594 | <tbl:cell column="reporter.externalId"><i>- none -</i></tbl:cell> |
---|
595 | <tbl:cell column="reporter.symbol"><i>- none -</i></tbl:cell> |
---|
596 | <tbl:cell column="reporter.description"><i>- none -</i></tbl:cell> |
---|
597 | <tbl:cell column="reporter.lastUpdate"><i>- none -</i></tbl:cell> |
---|
598 | <tbl:cell column="reporter.reporterType"><i>- none -</i></tbl:cell> |
---|
599 | <% |
---|
600 | if (reporterProperties != null) |
---|
601 | { |
---|
602 | for (ExtendedProperty ep : reporterProperties) |
---|
603 | { |
---|
604 | String name = ep.getName(); |
---|
605 | %> |
---|
606 | <tbl:cell column="<%="reporter."+name%>"><i>- none -</i></tbl:cell> |
---|
607 | <% |
---|
608 | } |
---|
609 | } |
---|
610 | } |
---|
611 | else |
---|
612 | { |
---|
613 | %> |
---|
614 | <tbl:cell column="reporter.name"><%=Base.getLink(ID, reporter.getName(), Item.REPORTER, reporter.getId(), true)%></tbl:cell> |
---|
615 | <tbl:cell column="reporter.externalId"><%=HTML.encodeTags(reporter.getExternalId())%></tbl:cell> |
---|
616 | <tbl:cell column="reporter.symbol"><%=HTML.encodeTags(reporter.getSymbol())%></tbl:cell> |
---|
617 | <tbl:cell column="reporter.description"><%=HTML.encodeTags(reporter.getDescription())%></tbl:cell> |
---|
618 | <tbl:cell column="reporter.lastUpdate" value="<%=reporter.getLastUpdate()%>" /> |
---|
619 | <tbl:cell column="reporter.reporterType" |
---|
620 | ><base:propertyvalue |
---|
621 | dbcontrol="<%=dc%>" |
---|
622 | item="<%=reporter%>" |
---|
623 | property="reporterType" |
---|
624 | enableEditLink="<%=mode.hasEditLink()%>" |
---|
625 | enablePropertyLink="<%=mode.hasPropertyLink()%>" |
---|
626 | /></tbl:cell> |
---|
627 | <% |
---|
628 | if (reporterProperties != null) |
---|
629 | { |
---|
630 | for (ExtendedProperty ep : reporterProperties) |
---|
631 | { |
---|
632 | String name = ep.getName(); |
---|
633 | %> |
---|
634 | <tbl:cell column="<%="reporter."+name%>"><tbl:cellvalue value="<%=reporter.getExtended(name)%>" /></tbl:cell> |
---|
635 | <% |
---|
636 | } |
---|
637 | } |
---|
638 | } |
---|
639 | %> |
---|
640 | <% |
---|
641 | Well well = null; |
---|
642 | boolean readWell = true; |
---|
643 | try |
---|
644 | { |
---|
645 | well = Feature.getWell(dc, item); |
---|
646 | } |
---|
647 | catch (PermissionDeniedException ex) |
---|
648 | { |
---|
649 | readWell = false; |
---|
650 | } |
---|
651 | if (!readWell) |
---|
652 | { |
---|
653 | %> |
---|
654 | <tbl:cell column="well.row"><i>- denied -</i></tbl:cell> |
---|
655 | <tbl:cell column="well.column"><i>- denied -</i></tbl:cell> |
---|
656 | <tbl:cell column="well.plate"><i>- denied -</i></tbl:cell> |
---|
657 | <% |
---|
658 | } |
---|
659 | else if (well == null) |
---|
660 | { |
---|
661 | %> |
---|
662 | <tbl:cell column="well.row"><i>- none -</i></tbl:cell> |
---|
663 | <tbl:cell column="well.column"><i>- none -</i></tbl:cell> |
---|
664 | <tbl:cell column="well.plate"><i>- none -</i></tbl:cell> |
---|
665 | <% |
---|
666 | } |
---|
667 | else |
---|
668 | { |
---|
669 | %> |
---|
670 | <tbl:cell column="well.row"><%=well.getRow()%></tbl:cell> |
---|
671 | <tbl:cell column="well.column"><%=well.getColumn()%></tbl:cell> |
---|
672 | <tbl:cell column="well.plate"><%=Base.getLinkedName(ID, well.getPlate(), false, true)%></tbl:cell> |
---|
673 | <% |
---|
674 | } |
---|
675 | %> |
---|
676 | </tbl:row> |
---|
677 | <% |
---|
678 | } |
---|
679 | } |
---|
680 | %> |
---|
681 | </tbl:rows> |
---|
682 | </tbl:data> |
---|
683 | <% |
---|
684 | if (numListed == 0) |
---|
685 | { |
---|
686 | %> |
---|
687 | <tbl:panel><%=features == null || features.getTotalCount() == 0 ? "No features were found" : "No features on this page. Please select another page!" %></tbl:panel> |
---|
688 | <% |
---|
689 | } |
---|
690 | else |
---|
691 | { |
---|
692 | %> |
---|
693 | <tbl:navigator |
---|
694 | page="<%=cc.getPage()%>" |
---|
695 | rowsperpage="<%=cc.getRowsPerPage()%>" |
---|
696 | totalrows="<%=features == null ? 0 : features.getTotalCount()%>" |
---|
697 | visible="<%=mode.hasNavigator()%>" |
---|
698 | locked="true" |
---|
699 | /> |
---|
700 | <% |
---|
701 | } |
---|
702 | %> |
---|
703 | </tbl:table> |
---|
704 | <base:buttongroup align="center"> |
---|
705 | <base:button onclick="returnSelected();" title="Ok" visible="<%=mode.hasOkButton()%>" /> |
---|
706 | <base:button onclick="window.close();" title="Cancel" visible="<%=mode.hasCancelButton()%>" /> |
---|
707 | <base:button onclick="window.close();" title="Close" visible="<%=mode.hasCloseButton()%>" /> |
---|
708 | </base:buttongroup> |
---|
709 | |
---|
710 | </t:tab> |
---|
711 | </t:tabcontrol> |
---|
712 | |
---|
713 | </base:body> |
---|
714 | </base:page> |
---|
715 | <% |
---|
716 | } |
---|
717 | finally |
---|
718 | { |
---|
719 | if (features != null) features.close(); |
---|
720 | if (dc != null) dc.close(); |
---|
721 | } |
---|
722 | %> |
---|