1 | <%-- $Id: edit_well.jsp 6254 2013-03-22 07:28:26Z nicklas $ |
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2 | ------------------------------------------------------------------ |
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3 | Copyright (C) 2006 Jari Häkkinen, Nicklas Nordborg, Martin Svensson |
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4 | |
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5 | This file is part of BASE - BioArray Software Environment. |
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6 | Available at http://base.thep.lu.se/ |
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7 | |
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8 | BASE is free software; you can redistribute it and/or |
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9 | modify it under the terms of the GNU General Public License |
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10 | as published by the Free Software Foundation; either version 3 |
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11 | of the License, or (at your option) any later version. |
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12 | |
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13 | BASE is distributed in the hope that it will be useful, |
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14 | but WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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16 | GNU General Public License for more details. |
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17 | |
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18 | You should have received a copy of the GNU General Public License |
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19 | along with BASE. If not, see <http://www.gnu.org/licenses/>. |
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20 | ------------------------------------------------------------------ |
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21 | @author Nicklas |
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22 | @version 2.0 |
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23 | --%> |
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24 | <%@ page pageEncoding="UTF-8" session="false" |
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25 | import="net.sf.basedb.core.SessionControl" |
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26 | import="net.sf.basedb.core.DbControl" |
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27 | import="net.sf.basedb.core.Item" |
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28 | import="net.sf.basedb.core.ItemContext" |
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29 | import="net.sf.basedb.core.Permission" |
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30 | import="net.sf.basedb.core.Well" |
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31 | import="net.sf.basedb.core.Plate" |
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32 | import="net.sf.basedb.core.PermissionDeniedException" |
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33 | import="net.sf.basedb.core.Reporter" |
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34 | import="net.sf.basedb.core.data.ReporterData" |
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35 | import="net.sf.basedb.core.BaseException" |
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36 | import="net.sf.basedb.clients.web.Base" |
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37 | import="net.sf.basedb.clients.web.util.HTML" |
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38 | import="net.sf.basedb.util.Values" |
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39 | import="net.sf.basedb.util.formatter.WellCoordinateFormatter" |
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40 | import="net.sf.basedb.core.plugin.GuiContext" |
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41 | import="net.sf.basedb.clients.web.extensions.ExtensionsControl" |
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42 | import="net.sf.basedb.clients.web.extensions.JspContext" |
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43 | import="net.sf.basedb.clients.web.extensions.edit.EditUtil" |
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44 | import="net.sf.basedb.util.extensions.ExtensionsInvoker" |
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45 | %> |
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46 | <%@ taglib prefix="base" uri="/WEB-INF/base.tld" %> |
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47 | <%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %> |
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48 | <% |
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49 | final Item itemType = Item.WELL; |
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50 | final SessionControl sc = Base.getExistingSessionControl(pageContext, true); |
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51 | final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null); |
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52 | final int itemId = cc.getId(); |
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53 | final int plateId = Values.getInt(request.getParameter("plate_id")); |
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54 | final String ID = sc.getId(); |
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55 | final float scale = Base.getScale(sc); |
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56 | final DbControl dc = sc.newDbControl(); |
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57 | try |
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58 | { |
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59 | String title = null; |
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60 | Well well = Well.getById(dc, itemId); |
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61 | Plate plate = well.getPlate(); |
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62 | ReporterData reporter = well.getReporter(); |
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63 | if (reporter != null) reporter = Reporter.getById(dc, reporter.getId()); |
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64 | WellCoordinateFormatter rowFormatter = new WellCoordinateFormatter(true); |
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65 | WellCoordinateFormatter columnFormatter = new WellCoordinateFormatter(false); |
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66 | |
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67 | title = "Edit well -- " + HTML.encodeTags(plate.getName()) + " [" + rowFormatter.format(well.getRow()) + columnFormatter.format(well.getColumn()) + "]"; |
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68 | |
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69 | if (well != null && !well.hasPermission(Permission.WRITE)) |
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70 | { |
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71 | throw new PermissionDeniedException(Permission.WRITE, itemType.toString()); |
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72 | } |
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73 | cc.setObject("item", well); |
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74 | JspContext jspContext = ExtensionsControl.createContext(dc, pageContext, GuiContext.item(itemType), well); |
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75 | ExtensionsInvoker invoker = EditUtil.useEditExtensions(jspContext); |
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76 | %> |
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77 | <base:page type="popup" title="<%=title%>"> |
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78 | <base:head scripts="tabcontrol.js" styles="tabcontrol.css"> |
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79 | <ext:scripts context="<%=jspContext%>" /> |
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80 | <ext:stylesheets context="<%=jspContext%>" /> |
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81 | <script> |
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82 | // Validate the "Well" tab |
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83 | function validateWell() |
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84 | { |
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85 | var frm = document.forms['well']; |
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86 | return true; |
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87 | } |
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88 | |
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89 | // Submit the form |
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90 | function saveSettings() |
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91 | { |
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92 | var frm = document.forms['well']; |
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93 | if (TabControl.validateActiveTab('settings')) |
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94 | { |
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95 | Annotations.saveModifiedAnnotationsToForm(frm); |
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96 | Annotations.saveInheritedAnnotationsToForm(frm); |
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97 | frm.submit(); |
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98 | } |
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99 | } |
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100 | |
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101 | function loadAnnotationsFrame() |
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102 | { |
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103 | Annotations.autoLoadEditFrame(); |
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104 | } |
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105 | |
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106 | function loadInheritedAnnotationsFrame() |
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107 | { |
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108 | Annotations.autoLoadInheritFrame(); |
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109 | } |
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110 | </script> |
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111 | </base:head> |
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112 | <base:body> |
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113 | <h1><%=title%> <base:help tabcontrol="settings" /></h1> |
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114 | <form action="index.jsp?ID=<%=ID%>" method="post" name="well"> |
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115 | <input type="hidden" name="cmd" value="UpdateItem"> |
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116 | <input type="hidden" name="plate_id" value="<%=plateId%>"> |
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117 | |
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118 | <t:tabcontrol id="settings" |
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119 | subclass="content dialogtabcontrol" |
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120 | position="bottom" |
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121 | extensions="<%=invoker%>"> |
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122 | <t:tab id="info" title="Well" validate="validateWell()" helpid="well.edit"> |
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123 | <table class="fullform input100 outlined"> |
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124 | <tr> |
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125 | <th>Plate</th> |
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126 | <td><%=HTML.encodeTags(plate.getName())%></td> |
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127 | </tr> |
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128 | <tr> |
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129 | <th>Coordinate</th> |
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130 | <td><%=rowFormatter.format(well.getRow())%><%=columnFormatter.format(well.getColumn())%></td> |
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131 | </tr> |
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132 | <tr> |
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133 | <th>Reporter name</th> |
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134 | <td><%=reporter == null ? "<i>- none -</i>" : HTML.encodeTags(reporter.getName())%></td> |
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135 | </tr> |
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136 | <tr> |
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137 | <th>Reporter External ID</th> |
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138 | <td><%=reporter == null ? "<i>- none -</i>" : HTML.encodeTags(reporter.getExternalId())%></td> |
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139 | </tr> |
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140 | <tr class="dynamic"> |
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141 | <th></th> |
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142 | <td></td> |
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143 | </tr> |
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144 | </table> |
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145 | </t:tab> |
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146 | |
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147 | <t:tab id="annotations" title="Annotations" helpid="annotations.edit" activate="loadAnnotationsFrame()"> |
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148 | <jsp:include page="../../../common/annotations/annotate_frameset.jsp"> |
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149 | <jsp:param name="item_type" value="<%=itemType.name()%>" /> |
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150 | <jsp:param name="item_id" value="<%=itemId%>" /> |
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151 | <jsp:param name="ID" value="<%=ID%>" /> |
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152 | </jsp:include> |
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153 | </t:tab> |
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154 | |
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155 | <t:tab id="inheritedAnnotations" title="Inherited annotations" |
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156 | helpid="annotations.edit.inherited" activate="loadInheritedAnnotationsFrame()"> |
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157 | <jsp:include page="../../../common/annotations/inherit_frameset.jsp"> |
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158 | <jsp:param name="item_type" value="<%=itemType.name()%>" /> |
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159 | <jsp:param name="item_id" value="<%=itemId%>" /> |
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160 | <jsp:param name="ID" value="<%=ID%>" /> |
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161 | </jsp:include> |
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162 | </t:tab> |
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163 | </t:tabcontrol> |
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164 | </form> |
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165 | |
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166 | <base:buttongroup subclass="dialogbuttons"> |
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167 | <base:button onclick="saveSettings()" title="Save" /> |
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168 | <base:button onclick="window.close()" title="Cancel" /> |
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169 | </base:buttongroup> |
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170 | </base:body> |
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171 | </base:page> |
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172 | <% |
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173 | } |
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174 | finally |
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175 | { |
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176 | if (dc != null) dc.close(); |
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177 | } |
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178 | %> |
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