1 | <%-- $Id $ |
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2 | ------------------------------------------------------------------ |
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3 | Copyright (C) 2011 Nicklas Nordborg |
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4 | |
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5 | This file is part of BASE - BioArray Software Environment. |
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6 | Available at http://base.thep.lu.se/ |
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7 | |
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8 | BASE is free software; you can redistribute it and/or |
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9 | modify it under the terms of the GNU General Public License |
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10 | as published by the Free Software Foundation; either version 3 |
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11 | of the License, or (at your option) any later version. |
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12 | |
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13 | BASE is distributed in the hope that it will be useful, |
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14 | but WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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16 | GNU General Public License for more details. |
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17 | |
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18 | You should have received a copy of the GNU General Public License |
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19 | along with BASE. If not, see <http://www.gnu.org/licenses/>. |
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20 | ------------------------------------------------------------------ |
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21 | |
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22 | --%> |
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23 | <%@ page pageEncoding="UTF-8" session="false" |
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24 | import="net.sf.basedb.core.SessionControl" |
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25 | import="net.sf.basedb.core.DbControl" |
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26 | import="net.sf.basedb.core.Item" |
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27 | import="net.sf.basedb.core.ItemContext" |
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28 | import="net.sf.basedb.core.Permission" |
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29 | import="net.sf.basedb.core.Experiment" |
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30 | import="net.sf.basedb.core.VirtualDb" |
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31 | import="net.sf.basedb.core.VirtualTable" |
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32 | import="net.sf.basedb.core.ReporterCloneTemplate" |
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33 | import="net.sf.basedb.core.ItemQuery" |
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34 | import="net.sf.basedb.core.ItemResultList" |
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35 | import="net.sf.basedb.core.Include" |
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36 | import="net.sf.basedb.core.Type" |
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37 | import="net.sf.basedb.core.query.Restrictions" |
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38 | import="net.sf.basedb.core.query.Expressions" |
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39 | import="net.sf.basedb.core.query.Orders" |
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40 | import="net.sf.basedb.core.query.Hql" |
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41 | import="net.sf.basedb.core.PermissionDeniedException" |
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42 | import="net.sf.basedb.core.BaseException" |
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43 | import="net.sf.basedb.core.Project" |
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44 | import="net.sf.basedb.clients.web.Base" |
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45 | import="net.sf.basedb.clients.web.WebException" |
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46 | import="net.sf.basedb.clients.web.util.HTML" |
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47 | import="net.sf.basedb.util.Values" |
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48 | import="net.sf.basedb.util.Enumeration" |
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49 | import="net.sf.basedb.core.plugin.GuiContext" |
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50 | import="java.util.Arrays" |
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51 | import="java.util.Date" |
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52 | import="java.util.List" |
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53 | %> |
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54 | <%@ taglib prefix="base" uri="/WEB-INF/base.tld" %> |
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55 | <%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %> |
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56 | <% |
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57 | final Item itemType = Item.EXPERIMENT; |
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58 | final SessionControl sc = Base.getExistingSessionControl(pageContext, true); |
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59 | final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null); |
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60 | final int itemId = cc.getId(); |
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61 | final String ID = sc.getId(); |
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62 | final float scale = Base.getScale(sc); |
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63 | final DbControl dc = sc.newDbControl(); |
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64 | try |
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65 | { |
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66 | String title = "Clone reporters"; |
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67 | Experiment experiment = Experiment.getById(dc, itemId); |
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68 | experiment.checkPermission(Permission.WRITE); |
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69 | VirtualDb virtualDb = experiment.getVirtualDb(); |
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70 | boolean canCloneFromRaw = experiment.getRawDataType().isStoredInDb(); |
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71 | boolean canCloneFromVirtual = virtualDb.hasTable(VirtualTable.POSITION); |
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72 | |
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73 | if (!canCloneFromRaw && !canCloneFromVirtual) |
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74 | { |
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75 | throw new BaseException("Can't clone reporters for experiment since it has no raw data or analyzed data"); |
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76 | } |
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77 | |
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78 | List<ReporterCloneTemplate> recentTemplates = (List<ReporterCloneTemplate>)cc.getRecent(dc, Item.REPORTERCLONETEMPLATE); |
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79 | |
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80 | final String clazz = "class=\"text\""; |
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81 | final String requiredClazz = "class=\"text required\""; |
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82 | %> |
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83 | <base:page type="popup" title="<%=title%>"> |
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84 | <base:head scripts="tabcontrol.js" styles="tabcontrol.css"> |
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85 | <script language="JavaScript"> |
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86 | // Validate the "Experiment" tab |
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87 | function validateExperiment() |
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88 | { |
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89 | var frm = document.forms['clone']; |
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90 | |
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91 | if (frm.reporterclonetemplate_id.selectedIndex < 0) |
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92 | { |
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93 | alert('A template must be selected'); |
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94 | frm.reporterclonetemplate_id.focus(); |
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95 | return false; |
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96 | } |
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97 | |
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98 | return true; |
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99 | } |
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100 | |
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101 | // Submit the form |
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102 | function saveSettings() |
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103 | { |
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104 | var frm = document.forms['clone']; |
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105 | if (validateExperiment()) |
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106 | { |
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107 | frm.submit(); |
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108 | } |
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109 | } |
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110 | |
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111 | function selectTemplateOnClick() |
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112 | { |
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113 | var frm = document.forms['clone']; |
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114 | var url = '../../admin/reporterclonetemplates/index.jsp?ID=<%=ID%>&mode=selectone&callback=setTemplateCallback'; |
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115 | if (frm.reporterclonetemplate_id.length > 1) |
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116 | { |
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117 | var id = Math.abs(parseInt(frm.reporterclonetemplate_id[0].value)); |
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118 | url += '&item_id='+id; |
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119 | } |
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120 | Main.openPopup(url, 'SelectReporterCloneTemplate', 1000, 700); |
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121 | } |
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122 | function setTemplateCallback(id, name) |
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123 | { |
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124 | var frm = document.forms['clone']; |
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125 | var list = frm.reporterclonetemplate_id; |
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126 | if (list.length < 2 || list[1].value == '0') // > |
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127 | { |
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128 | Forms.addListOption(list, 1, new Option()); |
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129 | } |
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130 | list[1].value = id; |
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131 | list[1].text = name; |
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132 | list.selectedIndex = 1; |
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133 | } |
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134 | |
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135 | function init() |
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136 | { |
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137 | var frm = document.forms['clone']; |
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138 | } |
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139 | </script> |
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140 | </base:head> |
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141 | <base:body onload="init()"> |
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142 | <h1><%=title%> <base:help helpid="experiment.clonereporters" /></h1> |
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143 | <form action="index.jsp?ID=<%=ID%>" method="post" name="clone" onsubmit="return false;"> |
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144 | <input type="hidden" name="cmd" value="CloneReporters"> |
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145 | <input type="hidden" name="item_id" value="<%=itemId %>"> |
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146 | |
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147 | <div class="content bottomborder"> |
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148 | <table class="fullform input100"> |
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149 | <tr> |
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150 | <th>Clone template</th> |
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151 | <td> |
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152 | <base:select |
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153 | id="reporterclonetemplate_id" |
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154 | clazz="selectionlist" |
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155 | required="false" |
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156 | current="<%=null%>" |
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157 | denied="<%=false%>" |
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158 | recent="<%=recentTemplates%>" |
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159 | newitem="<%=false%>" |
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160 | unselectedtext="- all properties -" |
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161 | onselect="selectTemplateOnClick()" |
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162 | /> |
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163 | </td> |
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164 | <td></td> |
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165 | </tr> |
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166 | <tr> |
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167 | <th>Clone source</th> |
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168 | <td> |
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169 | <select name="cloneSource"> |
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170 | <% |
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171 | if (canCloneFromRaw && canCloneFromVirtual) |
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172 | { |
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173 | %> |
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174 | <option value="AUTO">Auto |
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175 | <% |
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176 | } |
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177 | if (canCloneFromVirtual) |
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178 | { |
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179 | %> |
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180 | <option value="VIRTUAL">Analyzed data |
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181 | <% |
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182 | } |
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183 | if (canCloneFromRaw) |
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184 | { |
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185 | %> |
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186 | <option value="RAW">Raw data |
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187 | <% |
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188 | } |
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189 | %> |
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190 | </select> |
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191 | </td> |
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192 | <td></td> |
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193 | </tr> |
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194 | <tr class="dynamic"> |
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195 | <th>Description</th> |
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196 | <td> |
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197 | <textarea <%=clazz%> rows="6" name="description" |
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198 | ><%=HTML.encodeTags(experiment == null ? cc.getPropertyValue("description") : experiment.getDescription())%></textarea> |
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199 | </td> |
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200 | <td style="width: 20px;"> |
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201 | <base:icon image="zoom.png" |
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202 | onclick="Main.zoom('Description', 'clone', 'description')" |
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203 | tooltip="Edit in larger window" |
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204 | /> |
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205 | </td> |
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206 | </tr> |
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207 | </table> |
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208 | </div> |
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209 | </form> |
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210 | <base:buttongroup subclass="dialogbuttons"> |
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211 | <base:button onclick="saveSettings()" title="Next" /> |
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212 | <base:button onclick="window.close()" title="Cancel" /> |
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213 | </base:buttongroup> |
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214 | |
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215 | </base:body> |
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216 | </base:page> |
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217 | <% |
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218 | } |
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219 | finally |
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220 | { |
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221 | if (dc != null) dc.close(); |
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222 | } |
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223 | %> |
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