source: trunk/www/views/experiments/clone_reporters.jsp @ 5923

<%-- $Id $
  ------------------------------------------------------------------
  Copyright (C) 2011 Nicklas Nordborg

  This file is part of BASE - BioArray Software Environment.
  Available at http://base.thep.lu.se/

  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
  as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.

  BASE is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with BASE. If not, see <http://www.gnu.org/licenses/>.
  ------------------------------------------------------------------

--%>
<%@ page pageEncoding="UTF-8" session="false"
  import="net.sf.basedb.core.SessionControl"
  import="net.sf.basedb.core.DbControl"
  import="net.sf.basedb.core.Item"
  import="net.sf.basedb.core.ItemContext"
  import="net.sf.basedb.core.Permission"
  import="net.sf.basedb.core.Experiment"
  import="net.sf.basedb.core.VirtualDb"
  import="net.sf.basedb.core.VirtualTable"
  import="net.sf.basedb.core.ReporterCloneTemplate"
  import="net.sf.basedb.core.ItemQuery"
  import="net.sf.basedb.core.ItemResultList"
  import="net.sf.basedb.core.Include"
  import="net.sf.basedb.core.Type"
  import="net.sf.basedb.core.query.Restrictions"
  import="net.sf.basedb.core.query.Expressions"
  import="net.sf.basedb.core.query.Orders"
  import="net.sf.basedb.core.query.Hql"
  import="net.sf.basedb.core.PermissionDeniedException"
  import="net.sf.basedb.core.BaseException"
  import="net.sf.basedb.core.Project"
  import="net.sf.basedb.clients.web.Base"
  import="net.sf.basedb.clients.web.WebException"
  import="net.sf.basedb.clients.web.util.HTML"
  import="net.sf.basedb.util.Values"
  import="net.sf.basedb.util.Enumeration"
  import="net.sf.basedb.core.plugin.GuiContext"
  import="java.util.Arrays"
  import="java.util.Date"
  import="java.util.List"
%>
<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
<%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %>
<%
final Item itemType = Item.EXPERIMENT;
final SessionControl sc = Base.getExistingSessionControl(pageContext, true);
final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null);
final int itemId = cc.getId();
final String ID = sc.getId();
final float scale = Base.getScale(sc);
final DbControl dc = sc.newDbControl();
try
{
  String title = "Clone reporters";
  Experiment experiment = Experiment.getById(dc, itemId);
  experiment.checkPermission(Permission.WRITE);
  VirtualDb virtualDb = experiment.getVirtualDb();
  boolean canCloneFromRaw = experiment.getRawDataType().isStoredInDb();
  boolean canCloneFromVirtual = virtualDb.hasTable(VirtualTable.POSITION);
  
  if (!canCloneFromRaw && !canCloneFromVirtual)
  {
    throw new BaseException("Can't clone reporters for experiment since it has no raw data or analyzed data");
  }
  
  List<ReporterCloneTemplate> recentTemplates = (List<ReporterCloneTemplate>)cc.getRecent(dc, Item.REPORTERCLONETEMPLATE);
  
  final String clazz = "class=\"text\"";
  final String requiredClazz = "class=\"text required\"";
  %>
  <base:page type="popup" title="<%=title%>">
  <base:head scripts="tabcontrol.js" styles="tabcontrol.css">
    <script language="JavaScript">
    // Validate the "Experiment" tab
    function validateExperiment()
    {
      var frm = document.forms['clone'];
      
      if (frm.reporterclonetemplate_id.selectedIndex < 0)
      {
        alert('A template must be selected');
        frm.reporterclonetemplate_id.focus();
        return false;
      }

      return true;
    }
    
    // Submit the form
    function saveSettings()
    {
      var frm = document.forms['clone'];
      if (validateExperiment())
      {
        frm.submit();
      }
    }
    
    function selectTemplateOnClick()
    {
      var frm = document.forms['clone'];
      var url = '../../admin/reporterclonetemplates/index.jsp?ID=<%=ID%>&mode=selectone&callback=setTemplateCallback';
      if (frm.reporterclonetemplate_id.length > 1) 
      {
        var id = Math.abs(parseInt(frm.reporterclonetemplate_id[0].value));       
        url += '&item_id='+id;
      }
      Main.openPopup(url, 'SelectReporterCloneTemplate', 1000, 700);
    }
    function setTemplateCallback(id, name)
    {
      var frm = document.forms['clone'];
      var list = frm.reporterclonetemplate_id;
      if (list.length < 2 || list[1].value == '0') // >
      {
        Forms.addListOption(list, 1, new Option());
      }
      list[1].value = id;
      list[1].text = name;
      list.selectedIndex = 1;
    }

    function init()
    {
      var frm = document.forms['clone'];
    }
    </script>
  </base:head>
  <base:body onload="init()">
    <h1><%=title%> <base:help helpid="experiment.clonereporters" /></h1>
    <form action="index.jsp?ID=<%=ID%>" method="post" name="clone" onsubmit="return false;">
    <input type="hidden" name="cmd" value="CloneReporters">
    <input type="hidden" name="item_id" value="<%=itemId %>">

    <div class="content bottomborder">
      <table class="fullform input100">
      <tr>
        <th>Clone template</th>
        <td>
          <base:select 
            id="reporterclonetemplate_id"
            clazz="selectionlist"
            required="false"
            current="<%=null%>"
            denied="<%=false%>"
            recent="<%=recentTemplates%>"
            newitem="<%=false%>"
            unselectedtext="- all properties -"
            onselect="selectTemplateOnClick()"
          />
        </td>
        <td></td>
      </tr>
      <tr>
        <th>Clone source</th>
        <td>
          <select name="cloneSource">
          <%
          if (canCloneFromRaw && canCloneFromVirtual)
          {
            %>
            <option value="AUTO">Auto
            <%
          }
          if (canCloneFromVirtual)
          {
            %>
            <option value="VIRTUAL">Analyzed data
            <%
          }
          if (canCloneFromRaw)
          {
            %>
            <option value="RAW">Raw data
            <%
          }
          %>
          </select>
        </td>
        <td></td>
      </tr>
      <tr class="dynamic">
        <th>Description</th>
        <td>
          <textarea <%=clazz%> rows="6" name="description" 
            ><%=HTML.encodeTags(experiment == null ? cc.getPropertyValue("description") : experiment.getDescription())%></textarea>
        </td>
        <td style="width: 20px;">
          <base:icon image="zoom.png" 
            onclick="Main.zoom('Description', 'clone', 'description')"
            tooltip="Edit in larger window"
          />
        </td>
      </tr>
      </table>
    </div>
    </form>
    <base:buttongroup subclass="dialogbuttons">
      <base:button onclick="saveSettings()" title="Next" />
      <base:button onclick="window.close()" title="Cancel" />
    </base:buttongroup>

  </base:body>
  </base:page>
  <%
}
finally
{
  if (dc != null) dc.close();
}
%>