source: trunk/www/views/jobs/view_job.jsp @ 5705

<%-- $Id: view_job.jsp 5705 2011-08-22 12:21:49Z nicklas $
  ------------------------------------------------------------------
  Copyright (C) 2005 Nicklas Nordborg
  Copyright (C) 2006 Jari Häkkinen, Nicklas Nordborg, Gregory Vincic
  Copyright (C) 2007 Nicklas Nordborg

  This file is part of BASE - BioArray Software Environment.
  Available at http://base.thep.lu.se/

  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
  as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.

  BASE is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with BASE. If not, see <http://www.gnu.org/licenses/>.
  ------------------------------------------------------------------

  @author Nicklas
  @version 2.0
--%>
<%@ page pageEncoding="UTF-8" session="false"
  import="net.sf.basedb.core.SessionControl"
  import="net.sf.basedb.core.DbControl"
  import="net.sf.basedb.core.SystemItems"
  import="net.sf.basedb.core.Item"
  import="net.sf.basedb.core.ItemContext"
  import="net.sf.basedb.core.Permission"
  import="net.sf.basedb.core.Job"
  import="net.sf.basedb.core.JobAgent"
  import="net.sf.basedb.core.BasicItem"
  import="net.sf.basedb.core.Nameable"
  import="net.sf.basedb.core.File"
  import="net.sf.basedb.core.Path"
  import="net.sf.basedb.core.User"
  import="net.sf.basedb.core.ChangeHistory"
  import="net.sf.basedb.core.ItemResultIterator"
  import="net.sf.basedb.core.ItemQuery"
  import="net.sf.basedb.core.ItemResultList"  
  import="net.sf.basedb.core.PermissionDeniedException"
  import="net.sf.basedb.core.PluginDefinition"
  import="net.sf.basedb.core.PluginConfiguration"
  import="net.sf.basedb.core.PluginType"
  import="net.sf.basedb.core.ParameterInfo"
  import="net.sf.basedb.core.query.Orders"
  import="net.sf.basedb.core.query.Hql"
  import="net.sf.basedb.core.plugin.GuiContext"
  import="net.sf.basedb.core.plugin.NonRestartable"
  import="net.sf.basedb.core.plugin.Plugin"
  import="net.sf.basedb.core.signal.SignalTransporter"
  import="net.sf.basedb.core.signal.Signal"
  import="net.sf.basedb.plugins.util.Parameters"
  import="net.sf.basedb.clients.web.Base"
  import="net.sf.basedb.clients.web.ChangeHistoryUtil"
  import="net.sf.basedb.clients.web.util.HTML"
  import="net.sf.basedb.util.Values"
  import="net.sf.basedb.util.formatter.Formatter"
  import="net.sf.basedb.clients.web.formatter.FormatterFactory"
  import="java.util.Date"
  import="java.util.Map"
  import="java.util.Set"
  import="java.util.List"
  import="java.util.Collections"
  import="java.util.Collection"
%>
<%@ taglib prefix="base" uri="/WEB-INF/base.tld" %>
<%@ taglib prefix="t" uri="/WEB-INF/tab.tld" %>
<%@ taglib prefix="tbl" uri="/WEB-INF/table.tld" %>
<%!
  private static final Item itemType = Item.JOB;
  private static final GuiContext guiContext = new GuiContext(itemType, GuiContext.Type.ITEM);

  private String getItemName(BasicItem item)
  {
    String itemName = "";
    if (item instanceof File)
    {
      itemName = ((File)item).getPath().toString();
    }
    else if (item instanceof Nameable)
    {
      itemName = ((Nameable)item).getName();
    }
    else
    {
      itemName = item.toString();
    }
    return itemName;
  }
%>
<%
final SessionControl sc = Base.getExistingSessionControl(pageContext, true);
final String ID = sc.getId();
final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null);
final int itemId = cc.getId();
final String tab = Values.getString(request.getParameter("tab"), "properties");
final float scale = Base.getScale(sc);
final DbControl dc = sc.newDbControl();
try
{
  Job job = Job.getById(dc, itemId);
  String title = "View job -- " + HTML.encodeTags(job.getName());
  
  final boolean writePermission = job.hasPermission(Permission.WRITE);
  final boolean deletePermission = job.hasPermission(Permission.DELETE);
  final boolean isRemoved = job.isRemoved();
  final boolean isUsed = isRemoved && job.isUsed();
  final boolean deletePermanentlyPermission = deletePermission && !isUsed;
  
  boolean readCurrentConfig = true;
  PluginConfiguration currentConfig = null;
  try
  {
    currentConfig = job.getPluginConfiguration();
  }
  catch (PermissionDeniedException ex)
  {
    readCurrentConfig = false;
  }
  boolean readAgent = true;
  JobAgent agent = null;
  try
  {
    agent = job.getJobAgent();
  }
  catch (PermissionDeniedException ex)
  {
    readAgent = false;
  }

  int parameterVersion = job.getParameterVersion();
  int latestParameterVersion = currentConfig == null ? parameterVersion : currentConfig.getParameterVersion();

  final Job.Status status = job.getStatus();
  final boolean autoUpdate = status == Job.Status.WAITING || 
    status == Job.Status.PREPARED || status == Job.Status.EXECUTING || status == Job.Status.ABORTING;
  Formatter<Date> dateFormatter = FormatterFactory.getDateFormatter(sc);
  Formatter<Date> dateTimeFormatter = FormatterFactory.getDateTimeFormatter(sc);
  Set<String> jobParameters = job.getParameterNames();
  File logFile = null;
  if (!autoUpdate && jobParameters != null && jobParameters.contains(Parameters.LOGFILE_PARAMETER))
  {
    try
    {
      Object temp = job.getParameterValue(Parameters.LOGFILE_PARAMETER);
      if (temp instanceof File)
      {
        logFile = (File)temp;
      }
      else if (temp instanceof String)
      {
        logFile = File.getByPath(dc, new Path((String)temp, Path.Type.FILE), false);
      }
    }
    catch (Throwable t)
    {}
  }
  
  // Check if the plug-in supports the "Abort" signal
  boolean supportsAbort = status == Job.Status.WAITING && writePermission;
  if (status == Job.Status.EXECUTING && writePermission)
  {
    try
    {
      SignalTransporter signalTransporter = job.getSignalTransporter();
      Collection<Signal> supportedSignals = signalTransporter != null ? 
        signalTransporter.getSupportedSignals() : null;
      supportsAbort = signalTransporter != null && 
        (supportedSignals == null || supportedSignals.contains(Signal.ABORT));
    }
    catch (Exception ex)
    {}
  }
  %>
  <base:page type="popup" title="<%=title%>"> 
  <base:head scripts="tabcontrol.js,table.js,ajax.js,json2.js" styles="tabcontrol.css,progressbar.css,table.css">
  <script language="JavaScript">
  function autoUpdate()
  {
    var autoUpdate = <%=autoUpdate ? "true" : "false"%>;
    if (autoUpdate) sendProgressUpdateRequest();
  }
  function abortJob()
  {
    if (confirm('Are you sure? This action may not be undone'))
    {
      location.href = 'index.jsp?ID=<%=ID%>&cmd=AbortJob&item_id=<%=itemId%>';
    }
  }
  function restartJob(clearDryRun)
  {
    var parameterVersion = <%=parameterVersion%>;
    var latestVersion = <%=latestParameterVersion%>;
    var useLatestConfiguration = 0;
    if (parameterVersion != latestVersion)
    {
      var msg = 'The configuration parameters for the plugin has changed since\n';
      msg += 'the job was added to the job queue. Do you want to use the new\n';
      msg += 'configuration parameters?\n\n';
      msg += 'Ok / Yes = Use the new parameters (version = '+latestVersion + ')\n';
      msg += 'Cancel / No = Use the current parameters (version = ' + parameterVersion + ')';
      if (confirm(msg)) useLatestConfiguration = 1;
    }
    var url = 'index.jsp?ID=<%=ID%>&cmd=RestartJob&item_id=<%=itemId%>';
    url += '&useLatestConfiguration='+useLatestConfiguration;
    if (clearDryRun) url += '&clearDryRun=' + clearDryRun;
    location.href = url;
  }
  function reconfigureJob()
  {
    location.href = '../../common/plugin/index.jsp?ID=<%=ID%>&cmd=ConfigureJob&job_id=<%=itemId%>';
  }
  
    function deleteItemPermanently()
    {
      Main.deleteItemPermanently('<%=ID%>', true, '<%=itemType.name()%>', <%=itemId%>, '&callback=itemDeleted');
    }
    function itemDeleted()
    {
      location.href = getRoot() + 'common/close_popup.jsp?ID=<%=ID%>&refresh_opener=1&wait=0';
    }
    function showUsingItems()
    {
      Main.showUsingItems('<%=ID%>', '<%=itemType.name()%>', <%=itemId%>);
    }
    
    var lastStatus = '<%=status.name()%>';
    function sendProgressUpdateRequest()
    {
      var request = Ajax.getXmlHttpRequest();
      var url = 'ajax.jsp?ID=<%=ID%>&cmd=GetProgress&item_id=<%=itemId%>&'+Math.random();
      request.open("GET", url, true);
      Ajax.setReadyStateHandler(request, progressUpdateCallback);
      request.send(null);
    }
    function progressUpdateCallback(request)
    {
      var progress = Ajax.parseJsonResponse(request.responseText);
      if (progress && progress.status == 'ok')
      {
        var status = progress.jobStatus;
        var message = progress.message;
        var percentComplete = progress.percentComplete;
        var runningTime = progress.runningTime;
        
        if (lastStatus != status) location.reload();
        if (status == 'EXECUTING')
        {
          displayProgress(percentComplete, message, runningTime);
        }
      }
      setTimeout('sendProgressUpdateRequest()', 1500);
    }

    function displayProgress(percentDone, message, runningTime)
    {
      // Percent complete
      var doneElement = document.getElementById('percentDone');
      var remainElement = document.getElementById('percentRemain');
      var unknownElement = document.getElementById('percentUnknown');
      if (percentDone == -1)
      {
        Main.hide('percentDone');
        Main.hide('percentRemain');
        Main.show('percentUnknown');
        Main.hide('percent');
      }
      else
      {
        Main.hide('percentUnknown');
        Main.show('percent');
        document.getElementById('percent').innerHTML = '&nbsp;' + percentDone+'%';
        doneElement.style.width = percentDone+'%';
        remainElement.style.width = (100-percentDone)+'%';
        Main.showHide('percentDone', percentDone > 0);
        Main.showHide('percentRemain', percentDone < 100);
      }

      // Message
      document.getElementById('message').innerHTML = message;

      // Running time
      document.getElementById('runningTime').innerHTML = runningTime;
    }
  </script>
  </base:head>
  <base:body onload="autoUpdate()">
    <h3 class="docked"><%=title%> <base:help tabcontrol="main" /></h3>
    <t:tabcontrol id="main" active="<%=tab%>" position="bottom" contentstyle="<%="height: "+(int)(scale*350)+"px;"%>">
    <t:tab id="properties" title="Properties" helpid="job.view.properties">

      <%
      if (job.isRemoved())
      {
        %>
        <div class="itemstatus">
          <base:icon 
            image="<%=deletePermanentlyPermission ? "deleted.gif" : "deleted_disabled.gif"%>"
            onclick="<%=deletePermanentlyPermission ? "deleteItemPermanently()" : null%>"
            tooltip="<%=deletePermanentlyPermission ? "Permanently delete this item" : null%>"
            visible="<%=isRemoved%>"> This item has been flagged for deletion<br></base:icon>
          <base:icon image="used.gif" 
            onclick="showUsingItems()"
            tooltip="Show the items that are using this one"
            visible="<%=isUsed%>"> This item is used by other items and can't be permanently deleted<br></base:icon>
        </div>
        <%
      }
      %>
      <table class="form" cellspacing=0>
      <tr>
        <td class="prompt">Name</td>
        <td><%=HTML.encodeTags(job.getName())%></td>
      </tr>
      <tr valign="top">
        <td class="prompt">Plugin</td>
        <td>
          <base:propertyvalue item="<%=job%>" property="pluginDefinition.name" /> 
          <%=job.getPluginVersion() == null ?
            "" : "(version " + HTML.encodeTags(job.getPluginVersion()) + ")"%>
        </td>
      </tr>
      <%
      if (currentConfig != null)
      {
        %>
        <tr valign="top">
          <td class="subprompt">-configuration</td>
          <td>
            <base:propertyvalue item="<%=job%>" property="pluginConfiguration.name" />
          </td>
        </tr>
        <%
      }
      %>
      <tr valign="top">
        <td class="prompt">User</td>
        <td>
          <base:propertyvalue item="<%=job%>" property="owner.name" />
        </td>
      </tr>
      <tr valign="top">
        <td class="prompt">Experiment</td>
        <td>
          <base:propertyvalue item="<%=job%>" property="experiment.name" />
        </td>
      </tr>
      <tr>
        <td class="prompt">Description</td>
        <td><%=HTML.niceFormat(job.getDescription())%></td>
      </tr>
      <tr valign="top">
        <td class="prompt">Priority</td>
        <td>
          <%=job.getPriority()%> (1 = highest, 10 = lowest)
        </td>
      </tr>
      <tr valign="top">
        <td class="prompt">Status</td>
        <td <%=job.getStatus() == Job.Status.ERROR ? "class=\"error\" style=\"text-align: left;\"" : "" %>>
          <%=job.getStatus()%><%=job.isDryRun() ? " (dry-run)" : "" %>: 
          <span id="message"><%=HTML.niceFormat(job.getStatusMessage())%></span>
        </td>
      </tr>
      <tr valign="middle">
        <td class="prompt">Percent complete</td>
        <td>
          <table border=0 cellspacing=0 cellpadding=0>
          <tr>
          <td valign="middle" style="max-width: 100px;">
            <table width="100px" class="progressbar" border=0 cellspacing=0 cellpadding=0>
            <tr>
              <%
              int percent = job.getPercentComplete();
              %>
              <td id="percentDone" class="done" width="<%=percent%>%" 
                style="<%=percent <= 0 ? "display: none;" : ""%>">&nbsp;</td>
              <td id="percentRemain" class="remain" width="<%=100-percent%>%"
                style="<%=percent == 100 || percent == -1 ? "display: none;" : ""%>">&nbsp;</td>
              <td id="percentUnknown" width="100%" class="unknown"
                style="<%=percent != -1 ? "display: none" : "" %>">unknown</td>
            </tr>
            </table>
          </td>
          <td id="percent" 
            style="<%=percent < 0 ? "display: none;" : "" %>">&nbsp;<%=percent%>%</td>
          <%
          if (logFile != null)
          {
            %>
            <td valign="middle" style="padding-left: 10px;"><base:button image="view.gif" 
                title="View log&hellip;"
                onclick="<%="Main.viewFile('" + ID + "', " + logFile.getId() + ")"%>"
                tooltip="View the log file with detailed information about this job"
                /></td>
              <%
            }
            %>
          </tr>
          </table>
        </td>
      </tr>
      <tr valign="top">
        <td class="prompt">Created</td>
        <td>
          <%=dateTimeFormatter.format(job.getCreated())%>
        </td>
      </tr>
      <tr valign="top">
        <td class="prompt">Scheduled</td>
        <td>
          <%=dateTimeFormatter.format(job.getScheduled())%>
        </td>
      </tr>
      <tr valign="top">
        <td class="prompt">Started</td>
        <td>
          <%=dateTimeFormatter.format(job.getStarted())%>
        </td>
      </tr>
      <tr valign="top">
        <td class="prompt">Ended</td>
        <td>
          <%=dateTimeFormatter.format(job.getEnded())%>
        </td>
      </tr>
      <tr valign="top">
        <td class="prompt">Running time</td>
        <td id="runningTime">
          <%
          Date started = job.getStarted();
          if (started != null)
          {
            Date ended = job.getEnded();
            if (ended == null) ended = new Date();
            long runningTime = ended.getTime() - started.getTime();
            %>
            <%=Values.formatTime(runningTime / 1000)%>
            <%
          }
          %>
        </td>
      </tr>
      <tr valign="top">
        <td class="prompt">Server</td>
        <td>
          <%=HTML.encodeTags(job.getServer())%>
        </td>
      </tr>
      <tr valign="top">
        <td class="prompt">Job agent</td>
        <td><%=Base.getEncodedName(agent, !readAgent)%></td>
      </tr>
      </table>
      </t:tab>
      <%
      if (job.getStackTrace() != null)
      {
        %>
        <t:tab id="stacktrace" title="Stack trace" helpid="job.view.stacktrace">
          <div style="font-family: monospace">
          <%=HTML.niceFormat(job.getStackTrace())%>
          </div>
        </t:tab>
        <%
      }
      %>
  
      <t:tab id="parameters" title="Parameters" helpid="job.view.parameters">
        <h4>Job parameters</h4>
        <table class="form" cellspacing=0>
        <%
        List<String> names = new java.util.ArrayList<String>(jobParameters);
        Collections.sort(names);
        for (String name : names)
        {
          StringBuilder sb = new StringBuilder();
          String displayValue = "";
          String description = "";
          try
          {
            ParameterInfo pi = job.getParameterInfo(name);
            if (pi.getLabel() != null) name = HTML.encodeTags(pi.getLabel());
            description = HTML.encodeTags(pi.getDescription());
            List<?> values = pi.getValues();
            int i = 0;
            for (Object value : values)
            {
              if (value != null)
              {
                if (i > 0) sb.append(", ");
                i++;
                if (value instanceof BasicItem)
                {
                  sb.append(HTML.encodeTags(getItemName((BasicItem)value)));
                }
                else if (value instanceof Date)
                {
                  sb.append(dateFormatter.format((Date)value));
                }
                else
                {
                  sb.append(HTML.encodeTags(value.toString()));
                }
              }
            }
            displayValue = sb.toString();
          }
          catch (Throwable ex)
          {
            displayValue = "<i>ERROR: "+ex.getMessage()+"</i>";
          }
          %>
          <tr>
            <td class="prompt"><span title="<%=description%>"><%=name%></span></td>
            <td>
              <%=displayValue%>
            </td>
          </tr>
          <%
        }
        %>
        </table>

        <%
        if (!readCurrentConfig)
        {
          %>
          <h4>Plugin configuration parameters</h4>
          <i>- denied -</i>
          <%
        }
        else if (currentConfig != null)
        {
          %>
          <h4>Plugin configuration parameters</h4>
          <table class="form" cellspacing=0>
          <tr>
            <td class="prompt"><span 
              title="The version of the parmeters used for this job, current version in paranthesis">Parameter version</span></td>
            <td><%=parameterVersion%> (<%=latestParameterVersion %>)</td>
          </tr>
          <%
          names = new java.util.ArrayList<String>(currentConfig.getParameterNames(parameterVersion));
          Collections.sort(names);
          for (String name : names)
          {
            StringBuilder sb = new StringBuilder();
            String displayValue = "";
            String description = "";
            try
            {
              ParameterInfo pi = currentConfig.getParameterInfo(name, parameterVersion);
              if (pi.getLabel() != null) name = HTML.encodeTags(pi.getLabel());
              description = HTML.encodeTags(pi.getDescription());
              List<?> values = pi.getValues();
              int i = 0;
              for (Object value : values)
              {
                if (value != null)
                {
                  if (i > 0) sb.append(", ");
                  i++;
                  if (value instanceof BasicItem)
                  {
                    sb.append(HTML.encodeTags(getItemName((BasicItem)value)));
                  }
                  else if (value instanceof Date)
                  {
                    sb.append(dateFormatter.format((Date)value));
                  }
                  else
                  {
                    sb.append(HTML.encodeTags(value.toString()));
                  }
                }
              }
              displayValue = sb.toString();
            }
            catch (Throwable ex)
            {
              displayValue = "<i>ERROR: "+ex.getMessage()+"</i>";
            }
            %>
            <tr>
              <td class="prompt"><span title="<%=description%>"><%=name%></span></td>
              <td>
                <%=displayValue%>
              </td>
            </tr>
            <%
          }
          %>
          </table>
          <%
        }
        %>
        
      </t:tab>
      
      <t:tab id="changes" title="Changed items"
        tooltip="Display a log of all modifications made by this job"
        visible="<%=!autoUpdate && ChangeHistoryUtil.showChangeHistoryTab(sc) %>">
        <%
        ItemQuery<ChangeHistory> query = ChangeHistory.getChangesBy(job);
        query.order(Orders.asc(Hql.property("id")));
        ItemResultIterator<ChangeHistory> changes = query.iterate(dc);
        int numChanges = 0;
        %>
        <tbl:table id="history" clazz="itemlist" columns="all">
          <tbl:columndef id="changeType" title="Change type" />
          <tbl:columndef id="item" title="Item" />
          <tbl:columndef id="info" title="Info" />
          
          <tbl:data>
            <tbl:columns>
            </tbl:columns>
            <tbl:rows>
            <%
            while (changes.hasNext())
            {
              numChanges++;
              ChangeHistory change = changes.next();
              %>
              <tbl:row>
                <tbl:cell column="changeType"><%=change.getChangeType()%> <%=change.getItemType()%></tbl:cell>
                <tbl:cell column="item"><%=ChangeHistoryUtil.getItem(dc, change, false, false)%></tbl:cell>
                <tbl:cell column="info"><%=HTML.encodeTags(change.getChangeInfo())%></tbl:cell>
              </tbl:row>
              <%
            }
            %>
            </tbl:rows>
          </tbl:data>
          <%
          if (numChanges == 0)
          {
            %>
            <tbl:panel>
            No log entries found for this job. NOTE! This job may have made 
            other changes that are not recorded by the logging mechanism.
            </tbl:panel>
            <%
          }
          %>
        </tbl:table>
        
      </t:tab>
      
      </t:tabcontrol>
  
    <base:buttongroup align="center">
      <%
      if (supportsAbort)
      {
        %>
        <base:button onclick="abortJob()" title="Abort&hellip;" image="abort.png" />
        <%
      }
      %>
      <%
      if (job.getStatus() == Job.Status.ERROR && job.getJobType() == Job.Type.RUN_PLUGIN)
      {
        boolean restartable = !job.getPluginDefinition().supports("net.sf.basedb.core.plugin.NonRestartable");        
        if (restartable)
        {
          %>
          <base:button onclick="restartJob(0)" title="Restart job" 
            image="refresh.gif" 
            tooltip="Try to run this job again with the same parameters"
          />
          <base:button onclick="reconfigureJob()" title="Re-configure job"
            image="runplugin.gif"
            tooltip="Change the parameters for this job and try again"
            visible="<%=job.hasContext()%>"
          />
          <%
        }
      }
      if (job.getStatus() == Job.Status.DONE && job.isDryRun())
      {
        %>
        <base:button onclick="restartJob(1)" title="Really run" 
          image="refresh.gif" 
          tooltip="Run this dry-run job for real"
        />
        <%
      }
      %>
      <base:button onclick="window.close()" title="Close" />
    </base:buttongroup>
  </base:body>
  </base:page>
  <%
}
finally
{
  if (dc != null) dc.close();
}

%>