1 | <%-- $Id: list_reporters.jsp 6699 2015-01-30 10:32:48Z nicklas $ |
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2 | ------------------------------------------------------------------ |
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3 | Copyright (C) 2005 Nicklas Nordborg |
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4 | Copyright (C) 2006 Johan Enell, Jari Häkkinen, Nicklas Nordborg, Martin Svensson |
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5 | Copyright (C) 2007 Johan Enell, Nicklas Nordborg |
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6 | |
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7 | This file is part of BASE - BioArray Software Environment. |
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8 | Available at http://base.thep.lu.se/ |
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9 | |
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10 | BASE is free software; you can redistribute it and/or |
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11 | modify it under the terms of the GNU General Public License |
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12 | as published by the Free Software Foundation; either version 3 |
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13 | of the License, or (at your option) any later version. |
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14 | |
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15 | BASE is distributed in the hope that it will be useful, |
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16 | but WITHOUT ANY WARRANTY; without even the implied warranty of |
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17 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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18 | GNU General Public License for more details. |
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19 | |
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20 | You should have received a copy of the GNU General Public License |
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21 | along with BASE. If not, see <http://www.gnu.org/licenses/>. |
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22 | ------------------------------------------------------------------ |
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23 | |
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24 | @author Nicklas |
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25 | @version 2.0 |
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26 | --%> |
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27 | <%@ page pageEncoding="UTF-8" session="false" |
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28 | import="net.sf.basedb.core.SessionControl" |
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29 | import="net.sf.basedb.core.DbControl" |
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30 | import="net.sf.basedb.core.SystemItems" |
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31 | import="net.sf.basedb.core.Item" |
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32 | import="net.sf.basedb.core.ItemContext" |
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33 | import="net.sf.basedb.core.Reporter" |
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34 | import="net.sf.basedb.core.ReporterType" |
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35 | import="net.sf.basedb.core.PluginDefinition" |
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36 | import="net.sf.basedb.core.data.ReporterData" |
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37 | import="net.sf.basedb.core.ItemQuery" |
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38 | import="net.sf.basedb.core.ItemResultList" |
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39 | import="net.sf.basedb.core.DataQuery" |
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40 | import="net.sf.basedb.core.DataResultIterator" |
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41 | import="net.sf.basedb.core.ExtendedProperty" |
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42 | import="net.sf.basedb.core.ExtendedProperties" |
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43 | import="net.sf.basedb.core.Permission" |
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44 | import="net.sf.basedb.core.query.Orders" |
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45 | import="net.sf.basedb.core.query.Hql" |
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46 | import="net.sf.basedb.core.plugin.GuiContext" |
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47 | import="net.sf.basedb.core.plugin.Plugin" |
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48 | import="net.sf.basedb.util.Enumeration" |
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49 | import="net.sf.basedb.clients.web.Base" |
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50 | import="net.sf.basedb.clients.web.ModeInfo" |
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51 | import="net.sf.basedb.clients.web.util.HTML" |
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52 | import="net.sf.basedb.util.Values" |
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53 | import="net.sf.basedb.util.formatter.Formatter" |
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54 | import="net.sf.basedb.clients.web.formatter.FormatterFactory" |
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55 | import="net.sf.basedb.clients.web.extensions.ExtensionsControl" |
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56 | import="net.sf.basedb.clients.web.extensions.JspContext" |
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57 | import="net.sf.basedb.clients.web.extensions.renderer.PrefixSuffixRenderer" |
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58 | import="net.sf.basedb.clients.web.extensions.toolbar.ToolbarUtil" |
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59 | import="net.sf.basedb.clients.web.extensions.list.ListColumnUtil" |
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60 | import="net.sf.basedb.util.extensions.ExtensionsInvoker" |
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61 | import="java.util.Date" |
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62 | import="java.util.Map" |
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63 | import="java.util.List" |
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64 | %> |
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65 | <%@ taglib prefix="base" uri="/WEB-INF/base.tld" %> |
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66 | <%@ taglib prefix="tbl" uri="/WEB-INF/table.tld" %> |
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67 | <%@ taglib prefix="ext" uri="/WEB-INF/extensions.tld" %> |
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68 | <%! |
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69 | private static final Item itemType = Item.REPORTER; |
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70 | private static final GuiContext guiContext = new GuiContext(itemType, GuiContext.Type.LIST); |
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71 | %> |
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72 | <% |
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73 | final SessionControl sc = Base.getExistingSessionControl(pageContext, Permission.DENIED, itemType); |
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74 | final String ID = sc.getId(); |
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75 | final boolean createPermission = sc.hasPermission(Permission.CREATE, itemType); |
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76 | final boolean writePermission = sc.hasPermission(Permission.WRITE, itemType); |
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77 | final boolean deletePermission = sc.hasPermission(Permission.DELETE, itemType); |
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78 | |
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79 | final ItemContext cc = Base.getAndSetCurrentContext(sc, itemType, null, null); |
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80 | |
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81 | final ModeInfo mode = ModeInfo.get(request.getParameter("mode")); |
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82 | final String callback = request.getParameter("callback"); |
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83 | final String title = mode.generateTitle("reporter", "reporters"); |
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84 | final DbControl dc = sc.newDbControl(); |
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85 | DataResultIterator<ReporterData> reporters = null; |
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86 | ItemResultList<ReporterType> reporterTypes = null; |
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87 | try |
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88 | { |
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89 | final DataQuery<ReporterData> query = Reporter.getQuery(); |
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90 | cc.configureQuery(dc, query, true); |
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91 | |
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92 | Map<Plugin.MainType, Integer> pluginCount = PluginDefinition.countPlugins(dc, guiContext); |
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93 | final ItemQuery<ReporterType> typeQuery = ReporterType.getQuery(); |
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94 | typeQuery.order(Orders.asc(Hql.property("name"))); |
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95 | typeQuery.setCacheResult(true); |
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96 | List<ExtendedProperty> reporterProperties = ExtendedProperties.getProperties("ReporterData"); |
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97 | try |
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98 | { |
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99 | reporters = query.iterate(dc); |
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100 | } |
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101 | catch (Throwable t) |
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102 | { |
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103 | cc.setMessage(t.getMessage()); |
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104 | t.printStackTrace(); |
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105 | } |
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106 | int numListed = 0; |
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107 | Formatter<Date> timeFormatter = FormatterFactory.getDateTimeFormatter(sc); |
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108 | Formatter<Date> dateFormatter = FormatterFactory.getDateFormatter(sc); |
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109 | JspContext jspContext = ExtensionsControl.createContext(dc, pageContext, guiContext, null); |
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110 | ExtensionsInvoker invoker = ToolbarUtil.useExtensions(jspContext); |
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111 | ExtensionsInvoker columnsInvoker = ListColumnUtil.useExtensions(jspContext); |
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112 | %> |
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113 | <base:page title="<%=title==null ? "Reporters" : title%>" type="<%=mode.getPageType()%>" id="list-page"> |
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114 | <base:head scripts="table.js,~reporters.js" styles="table.css,toolbar.css"> |
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115 | <ext:scripts context="<%=jspContext%>" /> |
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116 | <ext:stylesheets context="<%=jspContext%>" /> |
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117 | </base:head> |
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118 | |
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119 | <base:body> |
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120 | <h1><%=title==null ? "Reporters" : title%></h1> |
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121 | <div class="content"> |
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122 | <tbl:table |
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123 | id="reporters" |
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124 | columns="<%=cc.getSetting("columns")%>" |
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125 | sortby="<%=cc.getSortProperty()%>" |
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126 | direction="<%=cc.getSortDirection()%>" |
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127 | action="index.jsp" |
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128 | sc="<%=sc%>" |
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129 | item="<%=itemType%>" |
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130 | filterrows="<%=cc.getFilterRows() %>" |
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131 | subclass="fulltable" |
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132 | > |
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133 | <tbl:hidden |
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134 | name="mode" |
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135 | value="<%=mode.getName()%>" |
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136 | /> |
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137 | <tbl:hidden |
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138 | name="callback" |
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139 | value="<%=callback%>" |
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140 | skip="<%=callback == null%>" |
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141 | /> |
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142 | <tbl:columndef |
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143 | id="externalId" |
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144 | clazz="uniquecol" |
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145 | property="externalId" |
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146 | datatype="string" |
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147 | title="External ID" |
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148 | sortable="true" |
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149 | filterable="true" |
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150 | exportable="true" |
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151 | /> |
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152 | <tbl:columndef |
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153 | id="name" |
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154 | property="name" |
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155 | datatype="string" |
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156 | title="Name" |
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157 | sortable="true" |
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158 | filterable="true" |
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159 | exportable="true" |
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160 | show="always" |
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161 | /> |
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162 | <tbl:columndef |
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163 | id="id" |
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164 | clazz="uniquecol" |
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165 | property="id" |
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166 | datatype="int" |
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167 | title="ID" |
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168 | sortable="true" |
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169 | filterable="true" |
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170 | exportable="true" |
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171 | /> |
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172 | <tbl:columndef |
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173 | id="symbol" |
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174 | property="symbol" |
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175 | datatype="string" |
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176 | title="Gene symbol" |
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177 | sortable="true" |
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178 | filterable="true" |
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179 | exportable="true" |
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180 | /> |
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181 | <tbl:columndef |
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182 | id="description" |
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183 | property="description" |
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184 | datatype="string" |
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185 | title="Description" |
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186 | sortable="true" |
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187 | filterable="true" |
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188 | exportable="true" |
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189 | /> |
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190 | <tbl:columndef |
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191 | id="reporterList" |
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192 | property="£reporterListScores" |
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193 | datatype="int" |
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194 | title="Reporter list" |
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195 | filterable="true" |
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196 | enumeration="<%=Base.getReporterListsEnum(dc)%>" |
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197 | multiple="false" |
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198 | /> |
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199 | <tbl:columndef |
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200 | id="entryDate" |
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201 | property="entryDate" |
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202 | datatype="date" |
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203 | title="Registered" |
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204 | sortable="true" |
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205 | filterable="true" |
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206 | exportable="true" |
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207 | formatter="<%=dateFormatter%>" |
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208 | /> |
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209 | <tbl:columndef |
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210 | id="lastUpdate" |
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211 | property="lastUpdate" |
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212 | datatype="timestamp" |
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213 | title="Last update" |
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214 | sortable="true" |
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215 | filterable="true" |
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216 | exportable="true" |
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217 | formatter="<%=timeFormatter%>" |
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218 | /> |
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219 | <tbl:columndef |
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220 | id="lastSource" |
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221 | property="lastSource" |
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222 | datatype="string" |
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223 | title="Last source" |
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224 | sortable="true" |
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225 | filterable="true" |
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226 | exportable="true" |
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227 | /> |
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228 | <% |
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229 | Enumeration<String, String> types = new Enumeration<String, String>(); |
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230 | reporterTypes = typeQuery.list(dc); |
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231 | types.add("", "- none -"); |
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232 | for (ReporterType rt : reporterTypes) |
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233 | { |
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234 | types.add(Integer.toString(rt.getId()), HTML.encodeTags(rt.getName())); |
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235 | } |
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236 | %> |
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237 | <tbl:columndef |
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238 | id="reporterType" |
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239 | property="reporterType" |
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240 | sortproperty="reporterType.name" |
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241 | exportproperty="reporterType.name:string" |
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242 | datatype="int" |
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243 | enumeration="<%=types%>" |
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244 | title="Type" |
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245 | sortable="true" |
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246 | filterable="true" |
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247 | exportable="true" |
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248 | /> |
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249 | <% |
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250 | if (reporterProperties != null) |
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251 | { |
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252 | for (ExtendedProperty ep : reporterProperties) |
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253 | { |
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254 | String name = ep.getName(); |
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255 | %> |
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256 | <tbl:columndef |
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257 | id="<%=name%>" |
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258 | property="<%=name%>" |
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259 | datatype="<%=ep.getType().getStringValue()%>" |
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260 | title="<%=HTML.encodeTags(ep.getTitle())%>" |
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261 | sortable="true" |
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262 | filterable="true" |
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263 | exportable="true" |
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264 | formatter="<%=FormatterFactory.getExtendedPropertyFormatter(sc, ep)%>" |
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265 | /> |
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266 | <% |
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267 | } |
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268 | } |
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269 | %> |
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270 | <tbl:columndef |
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271 | id="xt-columns" |
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272 | extensions="<%=columnsInvoker%>" |
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273 | jspcontext="<%=jspContext%>" |
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274 | /> |
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275 | <div class="panelgroup bg-filled-50 bottomborder"> |
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276 | <tbl:toolbar |
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277 | visible="<%=mode.hasToolbar()%>" |
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278 | subclass="bottomborder" |
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279 | > |
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280 | <tbl:button |
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281 | id="btnNewItem" |
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282 | disabled="<%=!createPermission%>" |
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283 | image="new.png" |
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284 | title="New…" |
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285 | tooltip="<%=createPermission ? "Create a new reporter" : "You do not have permission to create reporter"%>" |
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286 | /> |
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287 | <tbl:button |
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288 | id="btnDeleteItems" |
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289 | data-confirm="1" |
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290 | disabled="<%=!deletePermission%>" |
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291 | image="delete.png" |
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292 | title="Delete…" |
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293 | tooltip="<%=deletePermission ? "Delete the selected items" : "You do not have permission to delete reporters" %>" |
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294 | /> |
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295 | <tbl:button |
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296 | id="btnColumns" |
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297 | image="columns.png" |
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298 | title="Columns…" |
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299 | tooltip="Show, hide and re-order columns" |
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300 | /> |
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301 | <tbl:button |
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302 | id="btnNewReporterList" |
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303 | image="add.png" |
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304 | title="New reporter list…" |
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305 | tooltip="Create a new reporter list from matching reporters" |
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306 | visible="<%=sc.hasPermission(Permission.CREATE, Item.REPORTERLIST)%>" |
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307 | /> |
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308 | <tbl:button |
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309 | id="btnImport" |
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310 | data-plugin-type="IMPORT" |
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311 | image="import.png" |
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312 | title="Import…" |
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313 | tooltip="Import data" |
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314 | visible="<%=pluginCount.containsKey(Plugin.MainType.IMPORT)%>" |
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315 | /> |
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316 | <tbl:button |
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317 | id="btnExport" |
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318 | data-plugin-type="EXPORT" |
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319 | image="export.png" |
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320 | title="Export…" |
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321 | tooltip="Export data" |
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322 | visible="<%=pluginCount.containsKey(Plugin.MainType.EXPORT)%>" |
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323 | /> |
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324 | <tbl:button |
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325 | id="btnRunPlugin" |
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326 | data-plugin-type="OTHER" |
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327 | image="runplugin.png" |
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328 | title="Run plugin…" |
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329 | tooltip="Run a plugin" |
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330 | visible="<%=pluginCount.containsKey(Plugin.MainType.OTHER)%>" |
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331 | /> |
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332 | <ext:render extensions="<%=invoker%>" context="<%=jspContext%>" |
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333 | wrapper="<%=new PrefixSuffixRenderer(jspContext, "<td>", "</td>") %>"/> |
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334 | </tbl:toolbar> |
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335 | <tbl:panel> |
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336 | <tbl:presetselector /> |
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337 | <tbl:navigator |
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338 | page="<%=cc.getPage()%>" |
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339 | rowsperpage="<%=cc.getRowsPerPage()%>" |
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340 | totalrows="<%=reporters == null ? 0 : reporters.getTotalCount()%>" |
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341 | visible="<%=mode.hasNavigator()%>" |
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342 | /> |
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343 | </tbl:panel> |
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344 | </div> |
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345 | <tbl:data> |
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346 | <tbl:headers> |
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347 | <tbl:headerrow> |
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348 | <tbl:header colspan="3" /> |
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349 | <tbl:columnheaders /> |
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350 | </tbl:headerrow> |
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351 | <% |
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352 | int numFilters = cc.getNumPropertyFilters(); |
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353 | int numRows = cc.getFilterRows(); |
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354 | for (int filterNo = 0; filterNo < numRows; filterNo++) |
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355 | { |
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356 | boolean lastRow = filterNo == numRows-1; |
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357 | %> |
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358 | <tbl:headerrow> |
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359 | <tbl:header subclass="index" /> |
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360 | <tbl:header |
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361 | subclass="check" |
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362 | visible="<%=mode.hasCheck()%>" |
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363 | ><base:icon |
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364 | id="check.uncheck" |
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365 | image="check_uncheck.png" |
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366 | tooltip="Check/uncheck all" |
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367 | visible="<%=lastRow%>" |
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368 | /></tbl:header> |
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369 | <tbl:header |
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370 | subclass="check" |
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371 | visible="<%=mode.hasRadio()%>" |
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372 | /> |
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373 | <tbl:header |
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374 | subclass="icons" |
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375 | visible="<%=mode.hasIcons()%>" |
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376 | > |
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377 | <base:icon |
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378 | subclass="link table-filter-row-action" |
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379 | image="add.png" |
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380 | tooltip="Add extra filter row" |
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381 | visible="<%=lastRow%>" |
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382 | /><base:icon |
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383 | subclass="link table-filter-row-action" |
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384 | image="remove.png" |
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385 | tooltip="Remove this filter row" |
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386 | visible="<%=numRows > 1 || numFilters > 0 %>" |
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387 | data-remove-row="<%=filterNo%>" |
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388 | /> |
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389 | </tbl:header> |
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390 | <tbl:propertyfilter row="<%=filterNo%>" /> |
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391 | </tbl:headerrow> |
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392 | <% |
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393 | } |
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394 | %> |
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395 | </tbl:headers> |
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396 | <tbl:rows> |
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397 | <% |
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398 | if (cc.getMessage() != null) |
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399 | { |
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400 | %> |
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401 | <tbl:panel subclass="bg-filled-50"> |
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402 | <div class="messagecontainer error"><%=cc.getMessage()%></div> |
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403 | </tbl:panel> |
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404 | <% |
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405 | cc.setMessage(null); |
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406 | } |
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407 | int index = cc.getPage()*cc.getRowsPerPage(); |
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408 | int selectedItemId = cc.getId(); |
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409 | if (reporters != null) |
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410 | { |
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411 | while (reporters.hasNext()) |
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412 | { |
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413 | ReporterData item = reporters.next(); |
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414 | int itemId = item.getId(); |
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415 | String name = HTML.encodeTags(item.getName()); |
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416 | String tooltip = mode.isSelectionMode() ? |
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417 | "Select this item" : "View this item" + (writePermission ? " (use CTRL, ALT or SHIFT to edit)" : ""); |
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418 | index++; |
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419 | numListed++; |
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420 | %> |
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421 | <tbl:row> |
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422 | <tbl:header |
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423 | clazz="index" |
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424 | ><%=index%></tbl:header> |
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425 | <tbl:header |
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426 | clazz="check" |
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427 | visible="<%=mode.hasCheck()%>" |
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428 | ><input |
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429 | type="checkbox" |
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430 | name="<%=itemId%>" |
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431 | value="<%=itemId%>" |
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432 | title="<%=name%>" |
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433 | <%=cc.getSelected().contains(itemId) ? "checked" : ""%> |
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434 | ></tbl:header> |
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435 | <tbl:header |
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436 | clazz="check" |
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437 | visible="<%=mode.hasRadio()%>" |
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438 | ><input |
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439 | type="radio" |
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440 | name="item_id" |
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441 | value="<%=itemId%>" |
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442 | title="<%=name%>" |
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443 | <%=selectedItemId == itemId ? "checked" : ""%> |
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444 | ></tbl:header> |
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445 | <tbl:header |
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446 | clazz="icons" |
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447 | visible="<%=mode.hasIcons()%>" |
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448 | > </tbl:header> |
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449 | <tbl:cell column="name"><div |
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450 | class="link table-item" |
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451 | data-item-id="<%=itemId%>" |
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452 | data-no-edit="<%=writePermission ? 0 : 1 %>" |
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453 | tabindex="0" |
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454 | title="<%=tooltip%>"><%=name%></div></tbl:cell> |
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455 | <tbl:cell column="id"><%=item.getId()%></tbl:cell> |
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456 | <tbl:cell column="externalId"><%=HTML.encodeTags(item.getExternalId())%></tbl:cell> |
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457 | <tbl:cell column="symbol"><%=HTML.encodeTags(item.getSymbol())%></tbl:cell> |
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458 | <tbl:cell column="description"><%=HTML.encodeTags(item.getDescription())%></tbl:cell> |
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459 | <tbl:cell column="entryDate" value="<%=item.getEntryDate()%>" /> |
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460 | <tbl:cell column="lastUpdate" value="<%=item.getLastUpdate()%>" /> |
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461 | <tbl:cell column="lastSource"><%=HTML.encodeTags(item.getLastSource())%></tbl:cell> |
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462 | <tbl:cell column="reporterType" |
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463 | ><base:propertyvalue |
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464 | dbcontrol="<%=dc%>" |
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465 | item="<%=item%>" |
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466 | property="reporterType" |
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467 | enableEditLink="<%=mode.hasEditLink()%>" |
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468 | enablePropertyLink="<%=mode.hasPropertyLink()%>" |
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469 | /></tbl:cell> |
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470 | <% |
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471 | if (reporterProperties != null) |
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472 | { |
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473 | for (ExtendedProperty ep : reporterProperties) |
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474 | { |
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475 | name = ep.getName(); |
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476 | %> |
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477 | <tbl:cell column="<%=name%>"><tbl:cellvalue value="<%=item.getExtended(name)%>" /></tbl:cell> |
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478 | <% |
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479 | } |
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480 | } |
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481 | %> |
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482 | <tbl:xt-cells dc="<%=dc%>" item="<%=item%>"> |
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483 | <tbl:cell column="xt-columns" /> |
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484 | </tbl:xt-cells> |
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485 | </tbl:row> |
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486 | <% |
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487 | } |
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488 | } |
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489 | if (numListed == 0) |
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490 | { |
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491 | %> |
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492 | <tbl:panel subclass="bg-filled-50"> |
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493 | <div class="messagecontainer note"> |
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494 | <%=reporters == null || reporters.getTotalCount() == 0 ? "No reporters were found" : "No reporters on this page. Please select another page!" %> |
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495 | </div> |
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496 | </tbl:panel> |
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497 | <% |
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498 | } |
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499 | %> |
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500 | </tbl:rows> |
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501 | </tbl:data> |
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502 | </tbl:table> |
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503 | |
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504 | </div> |
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505 | <base:buttongroup subclass="dialogbuttons"> |
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506 | <base:button id="btnOk" title="Ok" visible="<%=mode.hasOkButton()%>" /> |
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507 | <base:button id="close" title="Cancel" visible="<%=mode.hasCancelButton()%>" /> |
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508 | <base:button id="close" title="Close" visible="<%=mode.hasCloseButton()%>" /> |
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509 | </base:buttongroup> |
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510 | </base:body> |
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511 | </base:page> |
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512 | <% |
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513 | } |
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514 | finally |
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515 | { |
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516 | if (reporters != null) reporters.close(); |
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517 | if (dc != null) dc.close(); |
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518 | } |
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519 | %> |
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