Changeset 3111


Ignore:
Timestamp:
Feb 7, 2007, 12:51:04 AM (15 years ago)
Author:
Jari Häkkinen
Message:

Added MeV to the list of 3rd party components and to the tools list.

Location:
trunk/doc
Files:
3 edited

Legend:

Unmodified
Added
Removed
  • trunk/doc/3rd-party-components.txt

    r3090 r3111  
    2828
    2929Here is list of 3rd-party components used by BASE. All the jar files
    30 needed are included in the <base>/lib directory. The URLs given here
    31 can be used if you need more information or need to update some
    32 component.
     30needed are included in the <base>/lib directory or in
     31<base>/www/plugins sub-directories for plug-ins based on others
     32work. The URLs given here can be used if you need more information or
     33need to update some component.
    3334
    3435
     
    163164License   : LGPL (lgpl.txt)
    164165Jar files : jfreechart-1.0.3.jar jcommon-1.0.6.jar
     166
     167
     168MultiExperiment Viewer
     169----------------------
     170MeV is a versatile microarray data analysis tool, incorporating
     171sophisticated algorithms for clustering, visualization,
     172classification, statistical analysis and biological theme discovery.
     173
     174More info : http://www.tm4.org/
     175Version   : Modified version based on official v4.0 release
     176License   : The Artisic License (http://www.tm4.org/artistic_license.pdf)
     177Jar files : <base>/www/plugins/org/tigr/microarray/mev/*.jar
     178
     179Note: Most of the jar files above are other 3rd-party components used
     180by MeV. BASE doesn't use these components directly. For access to the
     181modifed source go to
     182http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/coreplugins.html
    165183
    166184
  • trunk/doc/admin/index.html

    r3070 r3111  
    44    $Id$
    55
    6     Copyright (C) 2006 Authors contributing to this file.
     6    Copyright (C) 2006, 2007 Authors contributing to this file.
    77
    88    This file is part of BASE - BioArray Software Environment.
     
    4949  <ol>
    5050  <li><a href="../installation.html">Installing BASE 2</a>
    51   <li><a href="plugin_configuration/coreplugins.html">List of core plug-in with configuration files</a>
     51  <li><a href="plugin_configuration/coreplugins.html">List of core
     52      plug-in (with configurations) and tools</a>
    5253  <li><a href="extended-properties.html">Modifying extended-properties.xml</a>
    5354  <li><a href="jobagent.html">Adding job agents</a>
  • trunk/doc/admin/plugin_configuration/coreplugins.html

    r3092 r3111  
    2626  <a name="top"></a>
    2727  <head>
    28       <title>BASE 2 - Core plugins</title>
     28      <title>BASE 2 - Core plugins and tools</title>
    2929    <link rel=stylesheet type="text/css" href="../../styles.css">
    3030  </head>
     
    4040    <div class="abstract">
    4141      <p>
    42         This document lists all core plugins that are included in an
     42        This document lists all core plugins and tools that are included in an
    4343        installation of the latest BASE 2 version. <br> There are
    4444        configuration examples, to download and import (v2.2 and
     
    6565        </li>
    6666        <li><a href="#config_packages">Configuration packages</a></li>
     67        <li><a href="#tools">Tools</a></li>
    6768      </ol>
    6869
     
    370371        <div align="right"><a href="#top">top of this document</a></div>       
    371372      </li>
     373      <li>
     374        <a name="tools"></a>
     375        <h2>Tools</h2>
     376        <table class="listing">
     377          <tr>
     378            <th>Name</th>
     379            <th>Note</th>
     380          </tr>
     381          <tr>
     382            <td>MultiExperiment Viewer, MeV</td>
     383            <td>MeV is a versatile microarray data analysis tool,
     384              incorporating sophisticated algorithms for clustering,
     385              visualization, classification, statistical analysis and
     386              biological theme discovery, http://www.tm4.org. We use a
     387              modified version of MeV and provide access to the
     388              modified source here (link to be added here).</td>
     389          </tr>
     390        </table>
     391        <div align="right"><a href="#top">top of this document</a></div>       
     392      </li>
    372393    </ol>
    373394  </body>
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