Changeset 3112


Ignore:
Timestamp:
Feb 7, 2007, 2:13:05 AM (15 years ago)
Author:
Jari Häkkinen
Message:

Removed MeV export of an unneeded reporter column.

Location:
trunk
Files:
2 edited

Legend:

Unmodified
Added
Removed
  • trunk/src/plugins/core/net/sf/basedb/plugins/BioAssaySetExporter.java

    r3109 r3112  
    449449    // Data header
    450450    // Reporter headers
    451     out.write("reporterInternalId\treporterID\tlastUpdate\tgeneSymbol");
     451    out.write("reporterInternalId\treporterID\tgeneSymbol");
    452452    for (ExtendedProperty ep : reporterProperties)
    453453      out.write("\t"+ep.getName());
    454     // Number 3 in below statement comes from using three reporter
     454    // Number 2 in below statement comes from using two reporter
    455455    // entries from ReporterData. Below there is dependencies on this
    456     // '3' such as the selectReporter("") in below query.select()
     456    // '2' such as the selectReporter("") in below query.select()
    457457    // statements (and more).
    458     int nof_reporter_columns=3+reporterProperties.size();
     458    int nof_reporter_columns=2+reporterProperties.size();
    459459    // Bioassay headers
    460460    out.write("\texperimentalFactor");
     
    488488    query.select(Dynamic.select(VirtualColumn.COLUMN));
    489489    query.select(Dynamic.selectReporter("externalId"));
    490     query.select(Dynamic.selectReporter("lastUpdate"));
    491490    query.select(Dynamic.selectReporter("symbol"));
    492491    for (ExtendedProperty ep : reporterProperties)
     
    505504    int[] column_reporter= new int[nof_reporter_columns];
    506505    column_reporter[0]=spotData.getIndex("externalId");
    507     column_reporter[1]=spotData.getIndex("lastUpdate");
    508     column_reporter[2]=spotData.getIndex("symbol");
    509     int idx=3;
     506    column_reporter[1]=spotData.getIndex("symbol");
     507    int idx=2;
    510508    for (ExtendedProperty ep : reporterProperties)
    511509    {
  • trunk/www/plugins/org/tigr/microarray/mev/launch_mev.jsp

    r3106 r3112  
    4444// file. Columns and row index in MeV starts at 0. Starting column is
    4545// the sum of: number of extended reporter data (server specific
    46 // number) + number of non extended reporter data (currently 4 is used
     46// number) + number of non extended reporter data (currently 3 is used
    4747// in mevExport in bioassayset exporter) + the experimental factor
    4848// column (that is 1).
    49 final int column_idx=ExtendedProperties.getProperties("ReporterData").size()+5;
     49final int column_idx=ExtendedProperties.getProperties("ReporterData").size()+4;
    5050// The starting row is the sum of: The header line (1) + the number of
    5151// experimental factor annotations for an experiemnt.
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