Changeset 3148


Ignore:
Timestamp:
Feb 23, 2007, 4:12:20 PM (15 years ago)
Author:
Martin Svensson
Message:

Contents of documentation

File:
1 edited

Legend:

Unmodified
Added
Removed
  • trunk/doc/drafts/doc.txt

    r3146 r3148  
    99  - Easy to use
    1010  - Plugin interface
     11  - Handles massive amount of data
    1112  - All experiment information in one place
    12   - Handles massive amount of data
    1313  - Coop.s
    1414   
     
    1616  - Terminology used in BASE / real world
    1717  - Pre-knowledge
    18     - user
    19     - admin
     18    - For users
     19    - For admin
    2020
    2121====================
     
    2525- How to use this document
    2626
    27 - GUI configuration
    28   - Introduction
     27- GUI
     28  - Introduction
     29    - Help texts
    2930    - Menu bar
    3031    - Tool bar
    3132    - Ctrl/alt/shift - click
     33  - Congifuration
     34  - Main page
     35    - News
    3236  - List pages
    3337    - Filters
     
    3640      - Column config
    3741  - View pages
    38     - Listed parent/child items
     42    - Listed parent, child items, annotations etc.
    3943
    4044- Projects and the permission system
    4145  - Introduction
    42     - How it works in an users point of view
     46    - How it works (in an users point of view)
     47    - Permissions on an item
    4348  - Share items
    4449  - The active project
    4550  - Project
    46     - Project managing
     51    - Project management
    4752    - Items overview
     53   
     54- Trashcan
     55  - Introduction
     56  - Manage deleted items
    4857
    4958- File upload/File system
     
    5160    - Where are the files physically stored
    5261  - Upload file before use
    53   - File managing
     62  - File management
    5463    - New directory
    5564    - Uploadfile
     
    6170- Reporters
    6271  - Introduction
    63   - Reporter managing
     72  - Reporter management
    6473    - New/Edit
    6574    - Delete/Restore
     
    6877- Annotations
    6978  - Introduction
     79    - Inherited
    7080  - Types
    71   - Categories   
     81    - management
     82      - New/edit
     83      - Delete/Restore
     84  - Categories
     85    - Management
     86      - New/edit
     87      - Delete/Restore
     88
     89- Protocols
     90  - Types
     91    - Protocol type management
     92  - Protocol management
     93    - Parameters
     94
     95- Hardware
     96  - Hardware management
     97
     98- Software
     99  - Software management
    72100
    73101- Array LIMS
    74102  - Plates
    75103    - Introduction
     104    - Plate types
     105    - Plate mappings
     106      - Merge
     107    - Plate management
     108      - Wells
     109      - Events
     110 
    76111  - Array designs and slides
    77112    - Introduction
     
    80115    - Slides
    81116      - Batch
    82       - Create multiple
     117      - Slide management
     118        - Create multiple new
    83119
    84120- Biomaterials
     121  - Introduction
     122    - Workflow
     123    - Create children   
     124    - Biomaterial event
    85125  - Biosources
     126    - Biosource management
     127      - Create/Edit
     128      - Delete/Restore
    86129  - Samples
     130    - Sample management
     131      - Create/Edit
     132        - Pool
     133      - Delete/Restore
    87134  - Extracts
    88   - Labeled extracts
     135    - Extract management
     136      - Create/Edit
     137        - Pool
     138      - Delete/Restore
     139  - Labeled extracts
     140    - Labels
     141      - Label management
     142    - Labeled extract management
     143      - Create/Edit
     144        - Pool
     145      - Delete/Restore   
    89146  - Hybridizations
     147    - Hybridization management
     148      - Create/Edit
     149      - Delete/Restore 
    90150
    91151- Experiments and analysis
    92152  - Scans and images
     153    - Scan management
     154      - image management
    93155  - Raw bioassays
    94156  - Experiments
     
    96158    - Affymetrix data
    97159  - Creating a root bioassayset
     160  - Bioassayset
     161    - Overview plots
    98162  - Filtering
     163    - Formulas
     164      - Formula management
    99165  - Normalization
    100   - Running a plugin
     166  - Running a (analysis?)plugin
    101167    - Messages
    102168  - Plot tool
     169    - Scatter plot
     170    - Histogram plot
    103171  - Experiment overview
     172    - Validation of an experiment
     173      - Options
    104174  - Experiment explorer
     175    - Reporter view
     176    - Reporter search
    105177  - Using MeV
    106178 
    107179- Import and export of data
     180  - Import
     181    - Plugins
     182      - Auto detect
     183    - File Format
     184      - Auto detect
     185  - Export
     186    - Table exporter
    108187
    109188=====================
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