Changeset 3148 for trunk/doc/drafts/doc.txt

Timestamp:

Feb 23, 2007, 4:12:20 PM (16 years ago)

Author:

Martin Svensson

Message:

Contents of documentation

File:

• trunk/doc/drafts/doc.txt (modified) (9 diffs)

trunk/doc/drafts/doc.txt

@@ -9 +9 @@
   - Easy to use 
   - Plugin interface
+  - Handles massive amount of data
   - All experiment information in one place
-  - Handles massive amount of data
   - Coop.s
     
@@ -16 +16 @@
   - Terminology used in BASE / real world
   - Pre-knowledge
-    - user
-    - admin
+    - For users
+    - For admin
 
 ====================
@@ -25 +25 @@
 - How to use this document
 
-- GUI configuration
-  - Introduction
+- GUI
+  - Introduction
+    - Help texts
     - Menu bar
     - Tool bar
     - Ctrl/alt/shift - click
+  - Congifuration
+  - Main page
+    - News
   - List pages
     - Filters
@@ -36 +40 @@
       - Column config
   - View pages
-    - Listed parent/child items
+    - Listed parent, child items, annotations etc.
 
 - Projects and the permission system
   - Introduction
-    - How it works in an users point of view
+    - How it works (in an users point of view)
+    - Permissions on an item
   - Share items
   - The active project
   - Project
-    - Project managing
+    - Project management
     - Items overview
+    
+- Trashcan
+  - Introduction
+  - Manage deleted items
 
 - File upload/File system
@@ -51 +60 @@
     - Where are the files physically stored
   - Upload file before use
-  - File managing
+  - File management
     - New directory
     - Uploadfile
@@ -61 +70 @@
 - Reporters
   - Introduction
-  - Reporter managing
+  - Reporter management
     - New/Edit
     - Delete/Restore
@@ -68 +77 @@
 - Annotations
   - Introduction
+    - Inherited
   - Types
-  - Categories    
+    - management
+      - New/edit
+      - Delete/Restore
+  - Categories
+    - Management
+      - New/edit
+      - Delete/Restore
+
+- Protocols
+  - Types
+    - Protocol type management
+  - Protocol management
+    - Parameters
+
+- Hardware
+  - Hardware management
+
+- Software
+  - Software management
 
 - Array LIMS
   - Plates
     - Introduction
+    - Plate types
+    - Plate mappings
+      - Merge
+    - Plate management
+      - Wells
+      - Events
+ 
   - Array designs and slides
     - Introduction
@@ -80 +115 @@
     - Slides
       - Batch
-      - Create multiple
+      - Slide management
+        - Create multiple new
 
 - Biomaterials
+  - Introduction
+    - Workflow
+    - Create children    
+    - Biomaterial event
   - Biosources
+    - Biosource management
+      - Create/Edit
+      - Delete/Restore
   - Samples
+    - Sample management
+      - Create/Edit
+        - Pool
+      - Delete/Restore
   - Extracts
-  - Labeled extracts 
+    - Extract management
+      - Create/Edit
+        - Pool
+      - Delete/Restore 
+  - Labeled extracts
+    - Labels
+      - Label management
+    - Labeled extract management
+      - Create/Edit
+        - Pool
+      - Delete/Restore   
   - Hybridizations
+    - Hybridization management
+      - Create/Edit
+      - Delete/Restore  
 
 - Experiments and analysis
   - Scans and images
+    - Scan management
+      - image management
   - Raw bioassays
   - Experiments
@@ -96 +158 @@
     - Affymetrix data
   - Creating a root bioassayset
+  - Bioassayset
+    - Overview plots
   - Filtering
+    - Formulas
+      - Formula management
   - Normalization
-  - Running a plugin
+  - Running a (analysis?)plugin
     - Messages
   - Plot tool
+    - Scatter plot
+    - Histogram plot
   - Experiment overview
+    - Validation of an experiment
+      - Options
   - Experiment explorer
+    - Reporter view
+    - Reporter search
   - Using MeV
   
 - Import and export of data
+  - Import
+    - Plugins
+      - Auto detect
+    - File Format
+      - Auto detect
+  - Export
+    - Table exporter
 
 =====================