Changeset 3159


Ignore:
Timestamp:
Mar 5, 2007, 4:24:55 PM (15 years ago)
Author:
Martin Svensson
Message:

Changed the way the "chapter" files are included in the documentation and added
doctype declaration in all doc-files.

Location:
trunk/doc/src/docbook
Files:
1 deleted
25 edited

Legend:

Unmodified
Added
Removed
  • trunk/doc/src/docbook/admindoc/adding_user_group_roles.xml

    r3158 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/admindoc/index.xml

    r3158 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE part PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
     5<!--
     6  $Id:
     7
     8  Copyright (C) Authors contributing to this file.
     9
     10  This file is part of BASE - BioArray Software Environment.
     11  Available at http://base.thep.lu.se/
     12
     13  BASE is free software; you can redistribute it and/or
     14  modify it under the terms of the GNU General Public License
     15  as published by the Free Software Foundation; either version 2
     16  of the License, or (at your option) any later version.
     17
     18  BASE is distributed in the hope that it will be useful,
     19  but WITHOUT ANY WARRANTY; without even the implied warranty of
     20  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     21  GNU General Public License for more details.
     22
     23  You should have received a copy of the GNU General Public License
     24  along with this program; if not, write to the Free Software
     25  Foundation, Inc., 59 Temple Place - Suite 330,
     26  Boston, MA  02111-1307, USA.
     27-->
    228<part>
    329  <title>Admin documentation</title>
    4   &admin.installation_upgrade;
    5   &admin.plugin_installation;
    6   &admin.adding_user_group_roles;
     30  <include file="installation_upgrade.xml"/>
     31  <include file="plugin_installation.xml"/>
     32  <include file="adding_user_group_roles.xml"/>
    733</part>
  • trunk/doc/src/docbook/admindoc/installation_upgrade.xml

    r3158 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/admindoc/plugin_installation.xml

    r3158 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/developerdoc/index.xml

    r3153 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE part PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
     5<!--
     6  $Id:
     7
     8  Copyright (C) Authors contributing to this file.
     9
     10  This file is part of BASE - BioArray Software Environment.
     11  Available at http://base.thep.lu.se/
     12
     13  BASE is free software; you can redistribute it and/or
     14  modify it under the terms of the GNU General Public License
     15  as published by the Free Software Foundation; either version 2
     16  of the License, or (at your option) any later version.
     17
     18  BASE is distributed in the hope that it will be useful,
     19  but WITHOUT ANY WARRANTY; without even the implied warranty of
     20  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     21  GNU General Public License for more details.
     22
     23  You should have received a copy of the GNU General Public License
     24  along with this program; if not, write to the Free Software
     25  Foundation, Inc., 59 Temple Place - Suite 330,
     26  Boston, MA  02111-1307, USA.
     27-->
    228<part>
    329  <title>Developer documentation</title>
  • trunk/doc/src/docbook/index.xml

    r3153 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
    2 <!DOCTYPE article PUBLIC
     2<!DOCTYPE book PUBLIC
    33    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
    4     "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd" [
    5 <!ENTITY % local SYSTEM "local-entities.ent">
    6 %local;
    7 ]>
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
     5<!--
     6  $Id
     7
     8  Copyright (C) Authors contributing to this file.
     9
     10  This file is part of BASE - BioArray Software Environment.
     11  Available at http://base.thep.lu.se/
     12
     13  BASE is free software; you can redistribute it and/or
     14  modify it under the terms of the GNU General Public License
     15  as published by the Free Software Foundation; either version 2
     16  of the License, or (at your option) any later version.
     17
     18  BASE is distributed in the hope that it will be useful,
     19  but WITHOUT ANY WARRANTY; without even the implied warranty of
     20  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     21  GNU General Public License for more details.
     22
     23  You should have received a copy of the GNU General Public License
     24  along with this program; if not, write to the Free Software
     25  Foundation, Inc., 59 Temple Place - Suite 330,
     26  Boston, MA  02111-1307, USA.
     27-->
    828<book>
    929  <title>BASE2 Documentation</title>
    10   &overview;
    11   &user;
    12   &admin;
    13   &developer;
     30  <include file="overviewdoc/index.xml"/>
     31  <include file="userdoc/index.xml"/>
     32  <include file="admindoc/index.xml"/>
     33  <include file="developerdoc/index.xml"/>
    1434</book>
  • trunk/doc/src/docbook/overviewdoc/base_overview.xml

    r3157 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/overviewdoc/index.xml

    r3158 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE part PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
     5<!--
     6  $Id:
    27
     8  Copyright (C) Authors contributing to this file.
     9
     10  This file is part of BASE - BioArray Software Environment.
     11  Available at http://base.thep.lu.se/
     12
     13  BASE is free software; you can redistribute it and/or
     14  modify it under the terms of the GNU General Public License
     15  as published by the Free Software Foundation; either version 2
     16  of the License, or (at your option) any later version.
     17
     18  BASE is distributed in the hope that it will be useful,
     19  but WITHOUT ANY WARRANTY; without even the implied warranty of
     20  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     21  GNU General Public License for more details.
     22
     23  You should have received a copy of the GNU General Public License
     24  along with this program; if not, write to the Free Software
     25  Foundation, Inc., 59 Temple Place - Suite 330,
     26  Boston, MA  02111-1307, USA.
     27-->
    328<part>
    429  <title>Overview</title>
    5   &overview.why_base;
    6   &overview.base_overview;
     30  <include file="why_base.xml"/>
     31  <include file="base_overview.xml"/>
    732</part>
  • trunk/doc/src/docbook/overviewdoc/why_base.xml

    r3157 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/templates/chapter_temp.xml

    r3157 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/userdoc/about.xml

    r3153 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
     5<!--
     6  $Id:
     7
     8  Copyright (C) Authors contributing to this file.
     9
     10  This file is part of BASE - BioArray Software Environment.
     11  Available at http://base.thep.lu.se/
     12
     13  BASE is free software; you can redistribute it and/or
     14  modify it under the terms of the GNU General Public License
     15  as published by the Free Software Foundation; either version 2
     16  of the License, or (at your option) any later version.
     17
     18  BASE is distributed in the hope that it will be useful,
     19  but WITHOUT ANY WARRANTY; without even the implied warranty of
     20  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     21  GNU General Public License for more details.
     22
     23  You should have received a copy of the GNU General Public License
     24  along with this program; if not, write to the Free Software
     25  Foundation, Inc., 59 Temple Place - Suite 330,
     26  Boston, MA  02111-1307, USA.
     27-->
    228
    329<chapter>
  • trunk/doc/src/docbook/userdoc/annotations.xml

    r3157 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/userdoc/array_lims.xml

    r3157 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/userdoc/biomaterials.xml

    r3157 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/userdoc/experiments_analysis.xml

    r3157 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/userdoc/file_system.xml

    r3157 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/userdoc/gui.xml

    r3153 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
     5<!--
     6  $Id:
     7
     8  Copyright (C) Authors contributing to this file.
     9
     10  This file is part of BASE - BioArray Software Environment.
     11  Available at http://base.thep.lu.se/
     12
     13  BASE is free software; you can redistribute it and/or
     14  modify it under the terms of the GNU General Public License
     15  as published by the Free Software Foundation; either version 2
     16  of the License, or (at your option) any later version.
     17
     18  BASE is distributed in the hope that it will be useful,
     19  but WITHOUT ANY WARRANTY; without even the implied warranty of
     20  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     21  GNU General Public License for more details.
     22
     23  You should have received a copy of the GNU General Public License
     24  along with this program; if not, write to the Free Software
     25  Foundation, Inc., 59 Temple Place - Suite 330,
     26  Boston, MA  02111-1307, USA.
     27-->
    228
    329<chapter>
  • trunk/doc/src/docbook/userdoc/hardware.xml

    r3157 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/userdoc/import_export_data.xml

    r3157 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/userdoc/index.xml

    r3158 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE part PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<part>
    36  <title>User documentation</title>
    4   &user.about;
    5   &user.gui;
    6   &user.project_permission;
    7   &user.trashcan;
    8   &user.filesystem;
    9   &user.reporters;
    10   &user.annotations;
    11   &user.protocols;
    12   &user.hardware;
    13   &user.software;
    14   &user.arraylims;
    15   &user.biomaterials;
    16   &user.experiments_analysis;
    17   &user.import_export_data;
     7  <include file= "about.xml"/>
     8  <include file="gui.xml"/>
     9  <include file="project_permission.xml"/>
     10  <include file="trashcan.xml"/>
     11  <include file="file_system.xml"/>
     12  <include file="reporters.xml"/>
     13  <include file="annotations.xml"/>
     14  <include file="protocols.xml"/>
     15  <include file="hardware.xml"/>
     16  <include file="software.xml"/>
     17  <include file="array_lims.xml"/>
     18  <include file="biomaterials.xml"/>
     19  <include file="experiments_analysis.xml"/>
     20  <include file="import_export_data.xml"/>
    1821</part>
  • trunk/doc/src/docbook/userdoc/project_permission.xml

    r3157 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/userdoc/protocols.xml

    r3157 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/userdoc/reporters.xml

    r3157 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/userdoc/software.xml

    r3157 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
  • trunk/doc/src/docbook/userdoc/trashcan.xml

    r3157 r3159  
    11<?xml version="1.0" encoding="UTF-8"?>
     2<!DOCTYPE chapter PUBLIC
     3    "-//Dawid Weiss//DTD DocBook V3.1-Based Extension for XML and graphics inclusion//EN"
     4    "http://www.cs.put.poznan.pl/dweiss/dtd/dweiss-docbook-extensions.dtd">
    25<!--
    3   $Id
     6  $Id:
    47
    58  Copyright (C) Authors contributing to this file.
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