Changeset 3420


Ignore:
Timestamp:
May 31, 2007, 11:55:37 AM (15 years ago)
Author:
Martin Svensson
Message:

References #565

Location:
trunk/doc/src/docbook
Files:
30 deleted
8 edited

Legend:

Unmodified
Added
Removed
  • trunk/doc/src/docbook/userdoc/array_lims.xml

    r3414 r3420  
    169169          . For all other cases, this value will only be updated following
    170170          <guilabel>Importing the features</guilabel>
    171           , a process which is detailed in the next section.
     171          , a process which is detailed in
     172          <xref linkend="array_lims.arraydesign.properties.importfeature" />
     173          .
    172174        </para>
    173175      </sect3>
     
    176178        <title>Annotations and inherited annotations</title>
    177179        <para>
    178           This allow you to input values associated to annotation types devised to refine
     180          This allows you to input values associated to annotation types devised to refine
    179181          array design description. Read more about annotations in
    180182          <xref linkend="annotations" />
     
    194196          use the array design for downstream analysis with no further trouble. It also
    195197          matters when importing raw bioassay data and matching those to the corresponding
    196           array design. 
     198          array design.
    197199        </para>
    198200
     
    316318      </para>
    317319      <para>
    318         Number of slides that belongs to each array batch can be found in the
     320        How many slides each batch has can be found in the
    319321        <guilabel>Slides</guilabel>
    320322        column, list view page.
     
    349351              icon in the
    350352              <guilabel>Slides</guilabel>
    351               column for the batch to add a slide to. Corresponding button in the view
    352               page of a batch is
     353              column for the batch you want to add a slide to. Corresponding button in
     354              the view page of a batch is
    353355              <guibutton>New slide&hellip;</guibutton>
    354356              .
     
    391393                </listitem>
    392394              </itemizedlist>
    393               The wizard is described further down in this chapter,
     395              The wizard is described further down in
    394396              <xref linkend="array_lims.arrayslide.properties.wizard" />
    395397              .
     
    403405
    404406      <figure id="write_docbook_doc.figures.arrayslide-single-create">
    405         <title>Create New Array Slide from the ArrayBatch List View</title>
     407        <title>Create new array slide</title>
    406408        <screenshot>
    407409          <mediaobject>
     
    454456          </term>
    455457          <listitem>
    456             <para>Index to mark up the name of the array slide.</para>
     458            <para>The index of the array slide in selected array batch.</para>
    457459          </listitem>
    458460        </varlistentry>
     
    476478        <para>
    477479          As mentioned above there is an alternative to create one slide at a time if you
    478           have many to add. The wizard is in two steps, both showed in the picture
     480          have many to add. There is a wizard that can help you to create at the most 999
     481          slides in one go. The wizard is in two steps, both showed in the picture
    479482          <xref linkend="write_docbook_doc.figures.arrayslide-multiple-create" />
    480483          .
     
    486489                <variablelist>
    487490                  <varlistentry>
    488                     <term>Quantity</term>
     491                    <term>
     492                      <guilabel>Quantity</guilabel>
     493                    </term>
    489494                    <listitem>
    490495                      <para>
     
    495500                  </varlistentry>
    496501                  <varlistentry>
    497                     <term>Start at</term>
     502                    <term>
     503                      <guilabel>Start at</guilabel>
     504                    </term>
    498505                    <listitem>
    499506                      <para>
     
    504511                  </varlistentry>
    505512                  <varlistentry>
    506                     <term>Pad size</term>
     513                    <term>
     514                      <guilabel>Pad size</guilabel>
     515                    </term>
    507516                    <listitem>
    508517                      <para>
     
    518527                <important>
    519528                  <para>
    520                     Be sure to get everything right before proceeding, be cause
     529                    Be sure to get everything right before proceeding, because
    521530                    it is not possible to go back from step 2.
    522531                  </para>
     
    528537                In step 2 should the barcodes for the array slides be entered, for
    529538                those which have one. The autogenerated names of the slides can also
    530                 be changed if that is wanted, as long as not any name-field is
     539                be changed if that is wanted, as long as no name-field is left
    531540                empty.
    532541              </para>
    533542            </listitem>
    534543          </orderedlist>
    535         </para>
    536         <figure id="write_docbook_doc.figures.arrayslide-multiple-create">
    537           <title>Create multiple array slide</title>
    538           <screenshot>
    539             <mediaobject>
    540               <imageobject>
    541                 <imagedata contentwidth="10cm" width="10cm"
    542                   fileref="figures/arrayslide-multiple-create.png" format="PNG" />
    543               </imageobject>
    544             </mediaobject>
    545           </screenshot>
    546         </figure>
    547         <para>Fill in the necessary information as exhaustively as possible.</para>
     544
     545          <figure id="write_docbook_doc.figures.arrayslide-multiple-create">
     546            <title>Create multiple array slide</title>
     547            <screenshot>
     548              <mediaobject>
     549                <imageobject>
     550                  <imagedata contentwidth="10cm" width="10cm"
     551                    fileref="figures/arrayslide-multiple-create.png" format="PNG" />
     552                </imageobject>
     553              </mediaobject>
     554            </screenshot>
     555          </figure>
     556          Fill in the necessary information as exhaustively as possible.
     557        </para>
    548558        <para>
    549559          Click on the &gbSave; button to store the information in BASE2 or on the
    550560          &gbCancel; button to abort.
     561        </para>
     562        <para>
     563          See
     564          <xref linkend="annotations" />
     565          for information about annotating items and inherit annotations.
    551566        </para>
    552567      </sect3>
  • trunk/doc/src/docbook/userdoc/biomaterials.xml

    r3412 r3420  
    291291          </variablelist>
    292292        </helptext>
     293        <figure id="write_docbook_doc.figures.biosample-tab-1">
     294          <title>Sample properties</title>
     295          <screenshot>
     296            <mediaobject>
     297              <imageobject>
     298                <imagedata contentwidth="10cm" width="10cm"
     299                  fileref="figures/biosample-tab-1.png" format="PNG" />
     300              </imageobject>
     301            </mediaobject>
     302          </screenshot>
     303        </figure>
    293304      </sect3>
    294305      <sect3 id="biomaterials.samples.properties.parents">
     
    534545          </itemizedlist>
    535546        </helptext>
    536         <figure id="write_docbook_doc.figures.extract-tab-2-select-sample">
    537           <title>Parent tab</title>
    538           <screenshot>
    539             <mediaobject>
    540               <imageobject>
    541                 <imagedata contentwidth="12cm" width="12cm"
    542                   fileref="figures/extract-tab-2-select-extract.png" format="PNG" />
    543               </imageobject>
    544             </mediaobject>
    545           </screenshot>
    546         </figure>
    547547      </sect3>
    548548      <sect3 id="biomaterials.extracts.properties.annotations_param">
     
    10001000      <sect3 id="biomaterials.hybridizations.properties.labeledextracts">
    10011001        <title>Labeled extracts</title>
    1002         <figure id="write_docbook_doc.figures.hybridization-tab-2">
    1003           <title>Labeled Extract tab</title>
    1004           <screenshot>
    1005             <mediaobject>
    1006               <imageobject>
    1007                 <imagedata contentwidth="12cm" width="12cm"
    1008                   fileref="figures/hybridization-tab-2.png" format="PNG" />
    1009               </imageobject>
    1010             </mediaobject>
    1011           </screenshot>
    1012         </figure>
    10131002        <para>
    10141003          This important tab allows users to select the labeled extracts applied to an
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