Changeset 3420 for trunk/doc/src/docbook/userdoc/array_lims.xml

Timestamp:

May 31, 2007, 11:55:37 AM (16 years ago)

Author:

Martin Svensson

Message:

References #565

File:

• trunk/doc/src/docbook/userdoc/array_lims.xml (modified) (14 diffs)

trunk/doc/src/docbook/userdoc/array_lims.xml

@@ -169 +169 @@
           . For all other cases, this value will only be updated following
           <guilabel>Importing the features</guilabel>
-          , a process which is detailed in the next section.
+          , a process which is detailed in
+          <xref linkend="array_lims.arraydesign.properties.importfeature" />
+          .
         </para>
       </sect3>
@@ -176 +178 @@
         <title>Annotations and inherited annotations</title>
         <para>
-          This allow you to input values associated to annotation types devised to refine
+          This allows you to input values associated to annotation types devised to refine
           array design description. Read more about annotations in
           <xref linkend="annotations" />
@@ -194 +196 @@
           use the array design for downstream analysis with no further trouble. It also
           matters when importing raw bioassay data and matching those to the corresponding
-          array design. 
+          array design.
         </para>
 
@@ -316 +318 @@
       </para>
       <para>
-        Number of slides that belongs to each array batch can be found in the
+        How many slides each batch has can be found in the
         <guilabel>Slides</guilabel>
         column, list view page.
@@ -349 +351 @@
               icon in the
               <guilabel>Slides</guilabel>
-              column for the batch to add a slide to. Corresponding button in the view
-              page of a batch is
+              column for the batch you want to add a slide to. Corresponding button in
+              the view page of a batch is
               <guibutton>New slide&hellip;</guibutton>
               .
@@ -391 +393 @@
                 </listitem>
               </itemizedlist>
-              The wizard is described further down in this chapter,
+              The wizard is described further down in
               <xref linkend="array_lims.arrayslide.properties.wizard" />
               .
@@ -403 +405 @@
 
       <figure id="write_docbook_doc.figures.arrayslide-single-create">
-        <title>Create New Array Slide from the ArrayBatch List View</title>
+        <title>Create new array slide</title>
         <screenshot>
           <mediaobject>
@@ -454 +456 @@
           </term>
           <listitem>
-            <para>Index to mark up the name of the array slide.</para>
+            <para>The index of the array slide in selected array batch.</para>
           </listitem>
         </varlistentry>
@@ -476 +478 @@
         <para>
           As mentioned above there is an alternative to create one slide at a time if you
-          have many to add. The wizard is in two steps, both showed in the picture
+          have many to add. There is a wizard that can help you to create at the most 999
+          slides in one go. The wizard is in two steps, both showed in the picture
           <xref linkend="write_docbook_doc.figures.arrayslide-multiple-create" />
           .
@@ -486 +489 @@
                 <variablelist>
                   <varlistentry>
-                    <term>Quantity</term>
+                    <term>
+                      <guilabel>Quantity</guilabel>
+                    </term>
                     <listitem>
                       <para>
@@ -495 +500 @@
                   </varlistentry>
                   <varlistentry>
-                    <term>Start at</term>
+                    <term>
+                      <guilabel>Start at</guilabel>
+                    </term>
                     <listitem>
                       <para>
@@ -504 +511 @@
                   </varlistentry>
                   <varlistentry>
-                    <term>Pad size</term>
+                    <term>
+                      <guilabel>Pad size</guilabel>
+                    </term>
                     <listitem>
                       <para>
@@ -518 +527 @@
                 <important>
                   <para>
-                    Be sure to get everything right before proceeding, be cause
+                    Be sure to get everything right before proceeding, because
                     it is not possible to go back from step 2.
                   </para>
@@ -528 +537 @@
                 In step 2 should the barcodes for the array slides be entered, for
                 those which have one. The autogenerated names of the slides can also
-                be changed if that is wanted, as long as not any name-field is
+                be changed if that is wanted, as long as no name-field is left
                 empty.
               </para>
             </listitem>
           </orderedlist>
-        </para>
-        <figure id="write_docbook_doc.figures.arrayslide-multiple-create">
-          <title>Create multiple array slide</title>
-          <screenshot>
-            <mediaobject>
-              <imageobject>
-                <imagedata contentwidth="10cm" width="10cm"
-                  fileref="figures/arrayslide-multiple-create.png" format="PNG" />
-              </imageobject>
-            </mediaobject>
-          </screenshot>
-        </figure>
-        <para>Fill in the necessary information as exhaustively as possible.</para>
+
+          <figure id="write_docbook_doc.figures.arrayslide-multiple-create">
+            <title>Create multiple array slide</title>
+            <screenshot>
+              <mediaobject>
+                <imageobject>
+                  <imagedata contentwidth="10cm" width="10cm"
+                    fileref="figures/arrayslide-multiple-create.png" format="PNG" />
+                </imageobject>
+              </mediaobject>
+            </screenshot>
+          </figure>
+          Fill in the necessary information as exhaustively as possible.
+        </para>
         <para>
           Click on the &gbSave; button to store the information in BASE2 or on the
           &gbCancel; button to abort.
+        </para>
+        <para>
+          See
+          <xref linkend="annotations" />
+          for information about annotating items and inherit annotations. 
         </para>
       </sect3>