Changeset 3679
- Timestamp:
- Aug 17, 2007, 9:18:29 AM (16 years ago)
- Location:
- trunk
- Files:
-
- 1166 edited
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.svndigest/config (modified) (view diffs)
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base2.license.txt (modified) (view diffs)
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bin/initdb.bat (modified) (view diffs)
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bin/initdb.sh (modified) (view diffs)
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bin/migrate_from_1.2.sh (modified) (view diffs)
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bin/updatedb.sh (modified) (view diffs)
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build.xml (modified) (view diffs)
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credits.txt (modified) (view diffs)
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doc/3rd-party-components.txt (modified) (view diffs)
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doc/admin/extended-properties.html (modified) (view diffs)
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doc/admin/index.html (modified) (view diffs)
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doc/admin/plugin_configuration/coreplugins.html (modified) (view diffs)
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doc/admin/plugin_configuration/import/plate_importer_384wells.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/plate_importer_96wells.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/raw_data_importer_genepix-cy3_cy5.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/raw_data_importer_genepix-cy5_cy3.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/reporter_importer_384wells.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/reporter_importer_96wells.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/reporter_importer_affymetrix.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/reporter_importer_affymetrix2.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/reporter_importer_genepix.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/reporter_map_importer_genepix.xml (modified) (view diffs)
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doc/development/coding/batch/index.html (modified) (view diffs)
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doc/development/coding/data/AnyData.txt (modified) (view diffs)
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doc/development/coding/data/ChildData.txt (modified) (view diffs)
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doc/development/coding/data/index.html (modified) (view diffs)
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doc/development/coding/generic.html (modified) (view diffs)
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doc/development/coding/item/AChildItem.txt (modified) (view diffs)
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doc/development/coding/item/AnyItem.txt (modified) (view diffs)
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doc/development/coding/item/index.html (modified) (view diffs)
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doc/development/coding/process.html (modified) (view diffs)
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doc/development/coding/test/index.html (modified) (view diffs)
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doc/development/coding/web/index.html (modified) (view diffs)
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doc/development/index.html (modified) (view diffs)
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doc/development/overview/core/accesspermissions.html (modified) (view diffs)
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doc/development/overview/core/authentication.html (modified) (view diffs)
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doc/development/overview/core/batchprocessing.html (modified) (view diffs)
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doc/development/overview/core/datavalidation.html (modified) (view diffs)
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doc/development/overview/core/index.html (modified) (view diffs)
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doc/development/overview/core/itemhandling.html (modified) (view diffs)
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doc/development/overview/core/jobs.html (modified) (view diffs)
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doc/development/overview/core/parametertypes.html (modified) (view diffs)
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doc/development/overview/core/plugins.html (modified) (view diffs)
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doc/development/overview/core/quota.html (modified) (view diffs)
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doc/development/overview/core/transactions.html (modified) (view diffs)
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doc/development/overview/data/annotations.html (modified) (view diffs)
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doc/development/overview/data/authentication.html (modified) (view diffs)
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doc/development/overview/data/basic.html (modified) (view diffs)
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doc/development/overview/data/biomaterial.html (modified) (view diffs)
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doc/development/overview/data/clients.html (modified) (view diffs)
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doc/development/overview/data/experiments.html (modified) (view diffs)
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doc/development/overview/data/files.html (modified) (view diffs)
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doc/development/overview/data/hybridizations.html (modified) (view diffs)
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doc/development/overview/data/index.html (modified) (view diffs)
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doc/development/overview/data/misc.html (modified) (view diffs)
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doc/development/overview/data/parameters.html (modified) (view diffs)
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doc/development/overview/data/plates.html (modified) (view diffs)
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doc/development/overview/data/plugins.html (modified) (view diffs)
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doc/development/overview/data/protocols.html (modified) (view diffs)
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doc/development/overview/data/quota.html (modified) (view diffs)
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doc/development/overview/data/reporters.html (modified) (view diffs)
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doc/development/overview/data/slides.html (modified) (view diffs)
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doc/development/overview/data/wares.html (modified) (view diffs)
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doc/development/overview/dynamic/create.html (modified) (view diffs)
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doc/development/overview/dynamic/datacube.html (modified) (view diffs)
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doc/development/overview/dynamic/extravalues.html (modified) (view diffs)
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doc/development/overview/dynamic/filter.html (modified) (view diffs)
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doc/development/overview/dynamic/index.html (modified) (view diffs)
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doc/development/overview/dynamic/insert.html (modified) (view diffs)
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doc/development/overview/dynamic/intensities.html (modified) (view diffs)
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doc/development/overview/dynamic/merge.html (modified) (view diffs)
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doc/development/overview/dynamic/query.html (modified) (view diffs)
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doc/development/overview/dynamic/rootbioassayset.html (modified) (view diffs)
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doc/development/overview/exceptions/index.html (modified) (view diffs)
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doc/development/overview/index.html (modified) (view diffs)
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doc/development/overview/query/elements.html (modified) (view diffs)
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doc/development/overview/query/index.html (modified) (view diffs)
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doc/development/overview/query/overview.html (modified) (view diffs)
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doc/development/overview/query/result.html (modified) (view diffs)
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doc/development/overview/utility/index.html (modified) (view diffs)
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doc/development/overview/web/index.html (modified) (view diffs)
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doc/development/plugins/analysis/index.html (modified) (view diffs)
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doc/development/plugins/authentication/index.html (modified) (view diffs)
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doc/development/plugins/index.html (modified) (view diffs)
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doc/development/plugins/storage/index.html (modified) (view diffs)
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doc/specifications/core/accesscontrol.html (modified) (view diffs)
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doc/specifications/core/annotations.html (modified) (view diffs)
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doc/specifications/core/arraylims.html (modified) (view diffs)
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doc/specifications/core/authentication.html (modified) (view diffs)
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doc/specifications/core/biomaterials.html (modified) (view diffs)
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doc/specifications/core/defaultdata.html (modified) (view diffs)
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doc/specifications/core/experiments.html (modified) (view diffs)
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doc/specifications/core/fileupload.html (modified) (view diffs)
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doc/specifications/core/hybridizations.html (modified) (view diffs)
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doc/specifications/core/importexport.html (modified) (view diffs)
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doc/specifications/core/index.html (modified) (view diffs)
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doc/specifications/core/jobqueue.html (modified) (view diffs)
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doc/specifications/core/protocols.html (modified) (view diffs)
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doc/specifications/core/reporters.html (modified) (view diffs)
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doc/specifications/core/sessionsettings.html (modified) (view diffs)
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doc/specifications/features.html (modified) (view diffs)
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doc/specifications/migration/base1Tables.html (modified) (view diffs)
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doc/specifications/migration/index.html (modified) (view diffs)
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doc/specifications/technical.html (modified) (view diffs)
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doc/specifications/webclient/srs.xml (modified) (view diffs)
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doc/src/docbook/admindoc/index.xml (modified) (view diffs)
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doc/src/docbook/admindoc/installation_upgrade.xml (modified) (view diffs)
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doc/src/docbook/admindoc/plugin_installation.xml (modified) (view diffs)
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doc/src/docbook/appendix/jobagent.properties.xml (modified) (view diffs)
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doc/src/docbook/appendix/jobagent.sh.xml (modified) (view diffs)
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doc/src/docbook/developerdoc/write_docbook_doc.xml (modified) (view diffs)
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doc/src/docbook/overviewdoc/index.xml (modified) (view diffs)
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doc/src/docbook/overviewdoc/resources.xml (modified) (view diffs)
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doc/src/docbook/userdoc/analyse_in_base.xml (modified) (view diffs)
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doc/src/docbook/userdoc/analyse_mev.xml (modified) (view diffs)
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doc/src/docbook/userdoc/experiments.xml (modified) (view diffs)
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doc/src/docbook/userdoc/jobs.xml (modified) (view diffs)
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doc/src/docbook/userdoc/trashcan.xml (modified) (view diffs)
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doc/src/javadoc/javadoc.css (modified) (view diffs)
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doc/styles.css (modified) (view diffs)
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doc/test/index.html (modified) (view diffs)
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doc/test/roles/index.html (modified) (view diffs)
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doc/user/getting_started.html (modified) (view diffs)
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doc/user/index.html (modified) (view diffs)
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misc/config/minimalistic_extended-properties.xml (modified) (view diffs)
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misc/sql/createdb.mysql.sql (modified) (view diffs)
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misc/sql/createdb.postgres.sql (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/AnnotationTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/AnnotationTypeTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ArrayBatchTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ArrayBlockTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ArraySlideTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ArrayTypePlateTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ArrayTypeTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/CommonItemTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ExperimentTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ExtractTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/FileTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/GroupTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/HardwareTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/HybridizationTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ImageFileTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/LabelTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/LabeledExtractTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/Manager.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/MappedPlateTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/MeasuredBioMaterialTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/Migrater.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/NewsTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/PlateEventTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/PlateEventTypeTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/PlateTypeTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/PluginTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ProgressThread.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ProtocolTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ProtocolTypeTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/QuotaTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/RawBioAssayDataTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/RawBioAssayTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ReporterTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/RoleTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/SampleTissueTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/SampleTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ScanTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/SharedItemTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/SoftwareTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/Transfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/UnmappedPlateTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/UploadFileTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/UserTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/WellTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/WizzzardTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/WrappedDataItem.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/WrappedItem.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/Base.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/DynamicUtil.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/ModeInfo.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/PermissionUtil.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/WebException.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/dtd/export.dtd (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/dtd/tableinfo.dtd (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/fileupload/FileUpload.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/fileupload/FileUploadProgress.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/fileupload/UploadAbortedException.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/fileupload/UploadedFile.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/fileupload/package.html (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/plugins/SimpleExport.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/servlet/CharacterEncodingFilter.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/servlet/CompileAll.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/servlet/Download.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/servlet/PlotServlet.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/servlet/ViewSpotImage.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/Body.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/Button.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/ButtonGroup.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/Head.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/Help.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/Icon.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/Note.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/Page.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/PropertyValue.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/menu/Menu.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/menu/Menuitem.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/menu/Menuseparator.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/menu/Submenu.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/menu/package.html (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/path/Path.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/path/PathElement.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/tab/Tab.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/tab/TabControl.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/tab/package.html (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/tab/tab.css (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/tab/tab.js (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/tab/tab.tld (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/Button.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/Cell.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/ColumnDef.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/Columns.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/Data.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/Header.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/Hidden.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/Label.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/Navigator.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/Panel.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/PresetSelector.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/PropertyFilter.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/Row.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/Rows.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/Table.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/TableColumn.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/Toolbar.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/taglib/table/package.html (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/util/HTML.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/util/NameablePluginAdaptor.java (modified) (view diffs)
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src/core/common-queries.xml (modified) (view diffs)
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src/core/net/sf/basedb/core/AbstractBatcher.java (modified) (view diffs)
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src/core/net/sf/basedb/core/AbstractEntityQuery.java (modified) (view diffs)
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src/core/net/sf/basedb/core/AbstractQuery.java (modified) (view diffs)
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src/core/net/sf/basedb/core/AbstractResultList.java (modified) (view diffs)
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src/core/net/sf/basedb/core/AbstractSqlQuery.java (modified) (view diffs)
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src/core/net/sf/basedb/core/AccessControlled.java (modified) (view diffs)
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src/core/net/sf/basedb/core/AccountExpiredException.java (modified) (view diffs)
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src/core/net/sf/basedb/core/AlreadyLoggedInException.java (modified) (view diffs)
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src/core/net/sf/basedb/core/Annotatable.java (modified) (view diffs)
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src/core/net/sf/basedb/core/AnnotatedItem.java (modified) (view diffs)
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src/core/net/sf/basedb/core/Annotation.java (modified) (view diffs)
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src/core/net/sf/basedb/core/AnnotationBetweenRestriction.java (modified) (view diffs)
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src/core/net/sf/basedb/core/AnnotationInRestriction.java (modified) (view diffs)
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src/core/net/sf/basedb/core/AnnotationRestriction.java (modified) (view diffs)
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src/core/net/sf/basedb/core/AnnotationSet.java (modified) (view diffs)
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src/core/net/sf/basedb/core/AnnotationSimpleRestriction.java (modified) (view diffs)
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src/core/net/sf/basedb/core/AnnotationType.java (modified) (view diffs)
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src/core/net/sf/basedb/core/Application.java (modified) (view diffs)
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src/core/net/sf/basedb/core/ArrayBatch.java (modified) (view diffs)
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