Changeset 3695
- Timestamp:
- Aug 21, 2007, 11:58:53 AM (16 years ago)
- Location:
- branches/webservices
- Files:
-
- 4 deleted
- 1505 edited
- 18 copied
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.svndigest/config (modified) (view diffs)
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base2.license.txt (modified) (view diffs)
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bin/dbinfo.bat (modified) (view diffs)
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bin/dropindexes.bat (modified) (view diffs)
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bin/initdb.bat (modified) (view diffs)
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bin/initdb.sh (modified) (view diffs)
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bin/jobagent.bat (modified) (view diffs)
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bin/jobagent.sh (modified) (view diffs)
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bin/migrate_from_1.2.sh (modified) (view diffs)
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bin/set_classpath.bat (modified) (view diffs)
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bin/set_classpath.sh (modified) (view diffs)
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bin/updatedb.bat (modified) (view diffs)
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bin/updatedb.sh (modified) (view diffs)
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bin/updateindexes.bat (modified) (view diffs)
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build.xml (modified) (view diffs)
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config/dist/base.config (modified) (view diffs)
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config/dist/ehcache.xml (modified) (view diffs)
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config/dist/extended-properties.xml (modified) (view diffs)
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config/dist/hibernate.cfg.xml (modified) (view diffs)
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config/dist/jobagent.properties (modified) (view diffs)
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config/dist/migrate.properties (modified) (view diffs)
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config/dist/mysql-migration-queries.sql (modified) (view diffs)
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config/dist/mysql-queries.xml (modified) (view diffs)
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config/dist/postgres-queries.xml (modified) (view diffs)
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config/dist/raw-data-types.xml (modified) (view diffs)
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config/dist/web.xml (modified) (view diffs)
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config/test (copied) (copied from trunk/config/test) (view diffs)
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config/test/performance.properties (copied) (copied from trunk/config/test/performance.properties) (view diffs)
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credits.txt (modified) (view diffs)
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data/plugin_configfile.xml (modified) (view diffs)
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doc/3rd-party-components.txt (modified) (view diffs)
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doc/admin/base.config.html (modified) (view diffs)
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doc/admin/extended-properties.html (modified) (view diffs)
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doc/admin/index.html (modified) (view diffs)
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doc/admin/jobagent.html (deleted)
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doc/admin/jobagent.properties.html (deleted)
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doc/admin/jobagent.sh.html (deleted)
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doc/admin/plugin_configuration/coreplugins.html (modified) (view diffs)
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doc/admin/plugin_configuration/import/plate_importer_384wells.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/plate_importer_96wells.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/raw_data_importer_genepix-cy3_cy5.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/raw_data_importer_genepix-cy5_cy3.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/reporter_importer_384wells.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/reporter_importer_96wells.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/reporter_importer_affymetrix.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/reporter_importer_affymetrix2.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/reporter_importer_genepix.xml (modified) (view diffs)
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doc/admin/plugin_configuration/import/reporter_map_importer_genepix.xml (modified) (view diffs)
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doc/development/build.html (modified) (view diffs)
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doc/development/coding/batch/index.html (modified) (view diffs)
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doc/development/coding/data/AnyData.txt (modified) (view diffs)
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doc/development/coding/data/ChildData.txt (modified) (view diffs)
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doc/development/coding/data/index.html (modified) (view diffs)
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doc/development/coding/generic.html (modified) (view diffs)
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doc/development/coding/item/AChildItem.txt (modified) (view diffs)
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doc/development/coding/item/AnyItem.txt (modified) (view diffs)
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doc/development/coding/item/index.html (modified) (view diffs)
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doc/development/coding/process.html (modified) (view diffs)
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doc/development/coding/test/index.html (modified) (view diffs)
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doc/development/coding/web/index.html (modified) (view diffs)
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doc/development/index.html (modified) (view diffs)
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doc/development/overview/core/accesspermissions.html (modified) (view diffs)
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doc/development/overview/core/authentication.html (modified) (view diffs)
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doc/development/overview/core/batchprocessing.html (modified) (view diffs)
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doc/development/overview/core/data_in_files.html (copied) (copied from trunk/doc/development/overview/core/data_in_files.html) (view diffs)
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doc/development/overview/core/data_in_files.png (copied) (copied from trunk/doc/development/overview/core/data_in_files.png) (view diffs)
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doc/development/overview/core/datavalidation.html (modified) (view diffs)
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doc/development/overview/core/index.html (modified) (view diffs)
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doc/development/overview/core/itemhandling.html (modified) (view diffs)
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doc/development/overview/core/jobs.html (modified) (view diffs)
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doc/development/overview/core/parametertypes.html (modified) (view diffs)
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doc/development/overview/core/plugins.html (modified) (view diffs)
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doc/development/overview/core/quota.html (modified) (view diffs)
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doc/development/overview/core/transactions.html (modified) (view diffs)
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doc/development/overview/data/annotations.html (modified) (view diffs)
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doc/development/overview/data/authentication.html (modified) (view diffs)
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doc/development/overview/data/basic.html (modified) (view diffs)
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doc/development/overview/data/biomaterial.html (modified) (view diffs)
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doc/development/overview/data/clients.html (modified) (view diffs)
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doc/development/overview/data/data_in_files.html (copied) (copied from trunk/doc/development/overview/data/data_in_files.html) (view diffs)
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doc/development/overview/data/data_in_files.png (copied) (copied from trunk/doc/development/overview/data/data_in_files.png) (view diffs)
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doc/development/overview/data/experiments.html (modified) (view diffs)
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doc/development/overview/data/files.html (modified) (view diffs)
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doc/development/overview/data/hybridizations.html (modified) (view diffs)
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doc/development/overview/data/index.html (modified) (view diffs)
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doc/development/overview/data/misc.html (modified) (view diffs)
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doc/development/overview/data/parameters.html (modified) (view diffs)
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doc/development/overview/data/plates.html (modified) (view diffs)
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doc/development/overview/data/plugins.html (modified) (view diffs)
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doc/development/overview/data/protocols.html (modified) (view diffs)
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doc/development/overview/data/quota.html (modified) (view diffs)
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doc/development/overview/data/reporters.html (modified) (view diffs)
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doc/development/overview/data/slides.html (modified) (view diffs)
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doc/development/overview/data/wares.html (modified) (view diffs)
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doc/development/overview/dynamic/create.html (modified) (view diffs)
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doc/development/overview/dynamic/datacube.html (modified) (view diffs)
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doc/development/overview/dynamic/extravalues.html (modified) (view diffs)
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doc/development/overview/dynamic/filter.html (modified) (view diffs)
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doc/development/overview/dynamic/index.html (modified) (view diffs)
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doc/development/overview/dynamic/insert.html (modified) (view diffs)
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doc/development/overview/dynamic/intensities.html (modified) (view diffs)
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doc/development/overview/dynamic/merge.html (modified) (view diffs)
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doc/development/overview/dynamic/query.html (modified) (view diffs)
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doc/development/overview/dynamic/rootbioassayset.html (modified) (view diffs)
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doc/development/overview/exceptions/index.html (modified) (view diffs)
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doc/development/overview/index.html (modified) (view diffs)
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doc/development/overview/query/elements.html (modified) (view diffs)
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doc/development/overview/query/index.html (modified) (view diffs)
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doc/development/overview/query/overview.html (modified) (view diffs)
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doc/development/overview/query/result.html (modified) (view diffs)
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doc/development/overview/utility/index.html (modified) (view diffs)
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doc/development/overview/web/index.html (modified) (view diffs)
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doc/development/plugins/analysis/index.html (modified) (view diffs)
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doc/development/plugins/authentication/index.html (modified) (view diffs)
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doc/development/plugins/import/index.html (modified) (view diffs)
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doc/development/plugins/index.html (modified) (view diffs)
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doc/development/plugins/storage/index.html (modified) (view diffs)
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doc/index.html (deleted)
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doc/specifications/core/accesscontrol.html (modified) (view diffs)
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doc/specifications/core/annotations.html (modified) (view diffs)
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doc/specifications/core/arraylims.html (modified) (view diffs)
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doc/specifications/core/authentication.html (modified) (view diffs)
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doc/specifications/core/biomaterials.html (modified) (view diffs)
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doc/specifications/core/defaultdata.html (modified) (view diffs)
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doc/specifications/core/experiments.html (modified) (view diffs)
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doc/specifications/core/fileupload.html (modified) (view diffs)
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doc/specifications/core/hybridizations.html (modified) (view diffs)
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doc/specifications/core/importexport.html (modified) (view diffs)
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doc/specifications/core/index.html (modified) (view diffs)
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doc/specifications/core/jobqueue.html (modified) (view diffs)
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doc/specifications/core/protocols.html (modified) (view diffs)
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doc/specifications/core/reporters.html (modified) (view diffs)
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doc/specifications/core/sessionsettings.html (modified) (view diffs)
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doc/specifications/features.html (modified) (view diffs)
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doc/specifications/migration/base1Tables.html (modified) (view diffs)
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doc/specifications/migration/index.html (modified) (view diffs)
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doc/specifications/technical.html (modified) (view diffs)
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doc/specifications/webclient/srs.xml (modified) (view diffs)
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doc/src/docbook/admindoc/index.xml (modified) (view diffs)
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doc/src/docbook/admindoc/installation_upgrade.xml (modified) (view diffs)
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doc/src/docbook/admindoc/plugin_installation.xml (modified) (view diffs)
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doc/src/docbook/admindoc/user_administration.xml (modified) (view diffs)
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doc/src/docbook/appendix/base.config.xml (modified) (view diffs)
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doc/src/docbook/appendix/coreplugins.xml (modified) (view diffs)
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doc/src/docbook/appendix/extended_properties.xml (modified) (view diffs)
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doc/src/docbook/appendix/incompatible.xml (modified) (view diffs)
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doc/src/docbook/appendix/index.xml (modified) (view diffs)
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doc/src/docbook/appendix/jobagent.properties.xml (modified) (view diffs)
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doc/src/docbook/appendix/jobagent.sh.xml (modified) (view diffs)
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doc/src/docbook/appendix/menuguide.xml (modified) (view diffs)
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doc/src/docbook/appendix/migrate.properties.xml (modified) (view diffs)
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doc/src/docbook/appendix/other_config.xml (modified) (view diffs)
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doc/src/docbook/appendix/raw_data_types.xml (modified) (view diffs)
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doc/src/docbook/appendix/web.xml.xml (modified) (view diffs)
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doc/src/docbook/developerdoc/api_overview.xml (modified) (view diffs)
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doc/src/docbook/developerdoc/base_overview.xml (modified) (view diffs)
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doc/src/docbook/developerdoc/core_ref.xml (modified) (view diffs)
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doc/src/docbook/developerdoc/index.xml (modified) (view diffs)
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doc/src/docbook/developerdoc/javadoc.xml (modified) (view diffs)
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doc/src/docbook/developerdoc/plugin_developer.xml (modified) (view diffs)
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doc/src/docbook/developerdoc/write_docbook_doc.xml (modified) (view diffs)
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doc/src/docbook/faq/faqs.xml (modified) (view diffs)
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doc/src/docbook/index.xml (modified) (view diffs)
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doc/src/docbook/overviewdoc/base_overview.xml (modified) (view diffs)
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doc/src/docbook/overviewdoc/index.xml (modified) (view diffs)
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doc/src/docbook/overviewdoc/resources.xml (modified) (view diffs)
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doc/src/docbook/overviewdoc/why_base.xml (modified) (view diffs)
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doc/src/docbook/userdoc/about.xml (modified) (view diffs)
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doc/src/docbook/userdoc/analyse_in_base.xml (modified) (view diffs)
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doc/src/docbook/userdoc/analyse_mev.xml (modified) (view diffs)
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doc/src/docbook/userdoc/annotations.xml (modified) (view diffs)
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doc/src/docbook/userdoc/array_lims.xml (modified) (view diffs)
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doc/src/docbook/userdoc/biomaterials.xml (modified) (view diffs)
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doc/src/docbook/userdoc/experiments.xml (modified) (view diffs)
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doc/src/docbook/userdoc/experiments_analysis.xml (modified) (view diffs)
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doc/src/docbook/userdoc/file_system.xml (modified) (view diffs)
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doc/src/docbook/userdoc/hardware.xml (modified) (view diffs)
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doc/src/docbook/userdoc/import_export_data.xml (modified) (view diffs)
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doc/src/docbook/userdoc/index.xml (modified) (view diffs)
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doc/src/docbook/userdoc/jobs.xml (modified) (view diffs)
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doc/src/docbook/userdoc/project_permission.xml (modified) (view diffs)
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doc/src/docbook/userdoc/protocols.xml (modified) (view diffs)
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doc/src/docbook/userdoc/rawbioassays.xml (modified) (view diffs)
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doc/src/docbook/userdoc/reporters.xml (modified) (view diffs)
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doc/src/docbook/userdoc/scans_images.xml (modified) (view diffs)
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doc/src/docbook/userdoc/software.xml (modified) (view diffs)
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doc/src/docbook/userdoc/trashcan.xml (modified) (view diffs)
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doc/src/docbook/userdoc/webclient.xml (modified) (view diffs)
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doc/src/javadoc/javadoc.css (modified) (view diffs)
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doc/src/javadoc/overview.html (modified) (view diffs)
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doc/styles.css (modified) (view diffs)
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doc/test/index.html (modified) (view diffs)
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doc/test/merge/index.html (modified) (view diffs)
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doc/test/performance (copied) (copied from trunk/doc/test/performance) (view diffs)
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doc/test/performance/index.html (copied) (copied from trunk/doc/test/performance/index.html) (view diffs)
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doc/test/roles/index.html (modified) (view diffs)
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doc/uml/coreclasses.uml.xml (modified) (view diffs)
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doc/uml/dataclasses.uml.xml (modified) (view diffs)
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doc/user/index.html (modified) (view diffs)
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misc/config/minimalistic_extended-properties.xml (modified) (view diffs)
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misc/sql/createdb.mysql.sql (modified) (view diffs)
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misc/sql/createdb.postgres.sql (modified) (view diffs)
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src/clients/jobagent/net/sf/basedb/clients/jobagent/Agent.java (modified) (view diffs)
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src/clients/jobagent/net/sf/basedb/clients/jobagent/AgentController.java (modified) (view diffs)
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src/clients/jobagent/net/sf/basedb/clients/jobagent/CmdLine.java (modified) (view diffs)
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src/clients/jobagent/net/sf/basedb/clients/jobagent/JobExecutor.java (modified) (view diffs)
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src/clients/jobagent/net/sf/basedb/clients/jobagent/JobQueueChecker.java (modified) (view diffs)
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src/clients/jobagent/net/sf/basedb/clients/jobagent/JobRunner.java (modified) (view diffs)
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src/clients/jobagent/net/sf/basedb/clients/jobagent/executors/DummyJobExecutor.java (modified) (view diffs)
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src/clients/jobagent/net/sf/basedb/clients/jobagent/executors/ProcessJobExecutor.java (modified) (view diffs)
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src/clients/jobagent/net/sf/basedb/clients/jobagent/executors/ThreadJobExecutor.java (modified) (view diffs)
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src/clients/jobagent/net/sf/basedb/clients/jobagent/handlers/DefaultRequestHandler.java (modified) (view diffs)
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src/clients/jobagent/net/sf/basedb/clients/jobagent/handlers/InfoRequestHandler.java (modified) (view diffs)
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src/clients/jobagent/net/sf/basedb/clients/jobagent/handlers/PauseRequestHandler.java (modified) (view diffs)
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src/clients/jobagent/net/sf/basedb/clients/jobagent/handlers/PingRequestHandler.java (modified) (view diffs)
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src/clients/jobagent/net/sf/basedb/clients/jobagent/handlers/StartRequestHandler.java (modified) (view diffs)
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src/clients/jobagent/net/sf/basedb/clients/jobagent/handlers/StopRequestHandler.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/AnnotationTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/AnnotationTypeTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ArrayBatchTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ArrayBlockTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ArraySlideTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ArrayTypePlateTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ArrayTypeTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/CommonItemTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ExperimentTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ExtractTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/FileTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/GroupTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/HardwareTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/HybridizationTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ImageFileTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/LabelTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/LabeledExtractTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/Manager.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/MappedPlateTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/MeasuredBioMaterialTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/Migrater.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/NewsTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/PlateEventTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/PlateEventTypeTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/PlateTypeTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/PluginTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ProgressThread.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ProtocolTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ProtocolTypeTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/QuotaTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/RawBioAssayDataTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/RawBioAssayTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ReporterProxy.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ReporterTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/RoleTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/SampleTissueTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/SampleTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/ScanTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/SharedItemTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/SoftwareTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/Transfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/UnmappedPlateTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/UploadFileTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/UserTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/WellTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/WizzzardTransfer.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/WrappedDataItem.java (modified) (view diffs)
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src/clients/migrate/net/sf/basedb/clients/migrate/WrappedItem.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/Base.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/DuplicateWizardException.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/DynamicUtil.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/ExperimentExplorer.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/ModeInfo.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/PermissionUtil.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/WebException.java (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/dtd/export.dtd (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/dtd/tableinfo.dtd (modified) (view diffs)
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src/clients/web/net/sf/basedb/clients/web/fileupload/FileUpload.java (modified) (view diffs)
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