Changeset 3742

Timestamp:

Sep 17, 2007, 1:16:49 PM (16 years ago)

Author:

Nicklas Nordborg

Message:

Fixes #735: PermissionDeniedException? on array design list view

File:

• branches/2.4-stable/src/core/net/sf/basedb/core/ArrayDesign.java (modified) (2 diffs)

branches/2.4-stable/src/core/net/sf/basedb/core/ArrayDesign.java

@@ -532 +532 @@
     array design is an Affymetrix design information in the CDF file is 
     used, otherwise the database is queried.
-    @return The number of features or probesets
+    @return The number of features or probesets, or -1 if there is an
+      error getting the number
     @since 2.4
   */
@@ -540 +541 @@
     if (hasFeatures())
     {
-      if (isAffyChip())
+      try
       {
-        FusionCDFData cdf = Affymetrix.loadCdfFile(Affymetrix.getCdfFile(this));
-        numFeatures = cdf.getHeader().getNumProbeSets();
+        if (isAffyChip())
+        {
+          FusionCDFData cdf = Affymetrix.loadCdfFile(Affymetrix.getCdfFile(this));
+          numFeatures = cdf.getHeader().getNumProbeSets();
+        }
+        else
+        {
+          numFeatures = getFeatures().count(dc);
+        }
       }
-      else
+      catch (Throwable t)
       {
-        numFeatures = getFeatures().count(dc);
+        Application.getLogger().warn("Could not get number of features for array design: " + 
+          this, t);
+        numFeatures = -1;
       }
     }