Changeset 3948


Ignore:
Timestamp:
Nov 12, 2007, 11:36:03 AM (16 years ago)
Author:
Nicklas Nordborg
Message:

References #746.

  • Fixes links going from javadoc to docbook.
  • Marked old non-docbook documentation as old and linked to the new documentation.
Location:
trunk
Files:
160 edited

Legend:

Unmodified
Added
Removed

  • trunk/doc/development/coding/data/index.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333
    3434<div class="navigation">
    … …  
    4141
    4242  <h1>Coding rules and guidelines for the data layer</h1>
     43  <div class="warning">
     44    NOTE! This document is outdated and has been replaced with newer
     45    documentation. See <a href="../../../html/developerdoc/core_ref/core_ref.rules.datalayer.html">Data-layer rules</a>
     46  </div>
    4347
    4448  <div class="abstract">

  • trunk/doc/development/coding/process.html

    r3679 r3948  
    2929  <link rel=stylesheet type="text/css" href="../../styles.css">
    3030  </head>
    31 <body>
     31<body class="old">
    3232
    3333<div class="navigation">
    … …  
    4040
    4141  <h1>Development process</h1>
     42  <div class="warning">
     43    NOTE! This document is outdated and has been replaced with newer
     44    documentation. See <a href="../../html/developerdoc/core_ref/core_ref.rules.devprocess.html">Development process and other important procedures</a>
     45  </div>
    4246
    4347  <div class="abstract">

  • trunk/doc/development/overview/core/data_in_files.html

    r3757 r3948  
    2828  <link rel=stylesheet type="text/css" href="../../../styles.css">
    2929  </head>
    30 <body>
     30<body class="old">
    3131
    3232<div class="navigation">
    … …  
    4141
    4242  <h1>Store data in files</h1>
     43  <div class="warning">
     44    NOTE! This document is outdated and has been replaced with newer
     45    documentation. See <a href="../../../html/developerdoc/api/core_api.data_in_files.html">Core API : Using files to store data</a>
     46  </div>
    4347
    4448  <div class="abstract">
    45     <br>
    46     <div class="warning">
    47       NOTE! This document has been replaced with new documents:
    48       <ul>
    49       <li><a href="../../../html/developerdoc/api/core_api.data_in_files.html">Core API : Using files to store data</a>
    50       <li><a href="../../../html/developerdoc/api/data_api.platforms.html">Database/UML schema</a>
    51       <li><a href="../../../html/appendix/appendix.rawdatatypes.html">Default platforms installed with BASE</a>
    52       </li>
    53     </div>
    54  
    5549    <p>
    5650    This document explains how to use BASE for storing data

  • trunk/doc/development/overview/data/annotations.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4343
    4444  <h1>Annotations</h1>
    45 
     45  <div class="warning">
     46    NOTE! This document is outdated and has been replaced with newer
     47    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     48  </div>
    4649  <div class="abstract">
     50 
    4751    <p>
    4852    This document explains how annotations are implemented in BASE.

  • trunk/doc/development/overview/data/authentication.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4242
    4343  <h1>User authentication and access control</h1>
     44  <div class="warning">
     45    NOTE! This document is outdated and has been replaced with newer
     46    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     47  </div>
    4448
    4549  <div class="abstract">

  • trunk/doc/development/overview/data/basic.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4242
    4343  <h1>Basic classes and interfaces</h1>
     44  <div class="warning">
     45    NOTE! This document is outdated and has been replaced with newer
     46    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     47  </div>
    4448
    4549  <div class="abstract">

  • trunk/doc/development/overview/data/biomaterial.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4242
    4343  <h1>Biomaterial</h1>
     44  <div class="warning">
     45    NOTE! This document is outdated and has been replaced with newer
     46    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     47  </div>
    4448
    4549  <div class="abstract">

  • trunk/doc/development/overview/data/clients.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4242
    4343  <h1>Client, session and settings</h1>
     44  <div class="warning">
     45    NOTE! This document is outdated and has been replaced with newer
     46    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     47  </div>
    4448
    4549  <div class="abstract">

  • trunk/doc/development/overview/data/data_in_files.html

    r3757 r3948  
    2929</head>
    3030
    31 <body>
     31<body class="old">
    3232<div class="navigation">
    3333  <a href="../../../index.html">BASE</a>
    … …  
    4141
    4242  <h1>Store data in files</h1>
     43  <div class="warning">
     44    NOTE! This document is outdated and has been replaced with newer
     45    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     46  </div>
    4347
    4448  <div class="abstract">
    4549    <br>
    46     <div class="warning">
    47       NOTE! This document has been replaced with new documents:
    48       <ul>
    49       <li><a href="../../../html/developerdoc/api/core_api.data_in_files.html">Core API : Using files to store data</a>
    50       <li><a href="../../../html/developerdoc/api/data_api.platforms.html">Database/UML schema</a>
    51       <li><a href="../../../html/appendix/appendix.rawdatatypes.html">Default platforms installed with BASE</a>
    52       </li>
    53     </div>
    5450
    5551    <p>

  • trunk/doc/development/overview/data/experiments.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4242
    4343  <h1>Experiments and analysis</h1>
     44  <div class="warning">
     45    NOTE! This document is outdated and has been replaced with newer
     46    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     47  </div>
    4448
    4549  <div class="abstract">

  • trunk/doc/development/overview/data/files.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4343
    4444  <h1>Files and directories</h1>
     45  <div class="warning">
     46    NOTE! This document is outdated and has been replaced with newer
     47    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     48  </div>
    4549
    4650  <div class="abstract">

  • trunk/doc/development/overview/data/hybridizations.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4242
    4343  <h1>Hybridizations and raw data</h1>
     44  <div class="warning">
     45    NOTE! This document is outdated and has been replaced with newer
     46    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     47  </div>
    4448
    4549  <div class="abstract">

  • trunk/doc/development/overview/data/index.html

    r3681 r3948  
    2929  <link rel=stylesheet type="text/css" href="../../../styles.css">
    3030  </head>
    31 <body>
     31<body class="old">
    3232
    3333<div class="navigation">
    … …  
    4040
    4141  <h1>An overview of the database schema and data layer API</h1>
     42  <div class="warning">
     43    NOTE! This document is outdated and has been replaced with newer
     44    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     45  </div>
    4246
    4347  <div class="abstract">

  • trunk/doc/development/overview/data/misc.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4242
    4343  <h1>Misc</h1>
     44  <div class="warning">
     45    NOTE! This document is outdated and has been replaced with newer
     46    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     47  </div>
    4448  <div class="abstract">
    4549    <p>

  • trunk/doc/development/overview/data/parameters.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4343
    4444  <h1>Parameters</h1>
     45  <div class="warning">
     46    NOTE! This document is outdated and has been replaced with newer
     47    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     48  </div>
    4549
    4650  <div class="abstract">

  • trunk/doc/development/overview/data/plates.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4242
    4343  <h1>Array LIMS - Plates</h1>
     44  <div class="warning">
     45    NOTE! This document is outdated and has been replaced with newer
     46    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     47  </div>
    4448
    4549  <div class="abstract">

  • trunk/doc/development/overview/data/plugins.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4242
    4343  <h1>Plugins</h1>
     44  <div class="warning">
     45    NOTE! This document is outdated and has been replaced with newer
     46    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     47  </div>
    4448
    4549  <div class="abstract">

  • trunk/doc/development/overview/data/protocols.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4343
    4444  <h1>Protocols</h1>
     45  <div class="warning">
     46    NOTE! This document is outdated and has been replaced with newer
     47    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     48  </div>
    4549
    4650  <div class="abstract">

  • trunk/doc/development/overview/data/quota.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4343
    4444  <h1>Quota and disk usage</h1>
     45  <div class="warning">
     46    NOTE! This document is outdated and has been replaced with newer
     47    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     48  </div>
    4549
    4650  <div class="abstract">

  • trunk/doc/development/overview/data/reporters.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4343
    4444  <h1>Reporters</h1>
     45  <div class="warning">
     46    NOTE! This document is outdated and has been replaced with newer
     47    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     48  </div>
    4549
    4650  <div class="abstract">

  • trunk/doc/development/overview/data/slides.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4242
    4343  <h1>Array LIMS - Slides</h1>
     44  <div class="warning">
     45    NOTE! This document is outdated and has been replaced with newer
     46    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     47  </div>
    4448
    4549  <div class="abstract">

  • trunk/doc/development/overview/data/wares.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333<div class="navigation">
    3434  <a href="../../../index.html">BASE</a>
    … …  
    4343
    4444  <h1>Hardware and software</h1>
     45  <div class="warning">
     46    NOTE! This document is outdated and has been replaced with newer
     47    documentation. See <a href="../../../html/developerdoc/api/api_overview.data_api.html">The database schema and the Data Layer API</a>
     48  </div>
    4549
    4650  <div class="abstract">

  • trunk/doc/development/plugins/analysis/index.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333
    3434<div class="navigation">
    … …  
    4141
    4242  <h1>Analysis plugins</h1>
     43  <div class="warning">
     44    NOTE! This document is outdated and has been replaced with newer
     45    documentation. See <a href="../../../html/developerdoc/plugin_developer/plugin_developer.analyse.html">Plug-in developer: Analysis plug-ins</a>
     46  </div>
    4347
    4448  <div class="abstract">

  • trunk/doc/development/plugins/authentication/index.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333
    3434<div class="navigation">
    … …  
    4141
    4242  <h1>Plugins for user authentication</h1>
     43  <div class="warning">
     44    NOTE! This document is outdated and has been replaced with newer
     45    documentation. See <a href="../../../html/developerdoc/plugin_developer/plugin_developer.other.html">Plug-in developer: Authentication plug-ins</a>
     46  </div>
    4347
    4448  <div class="abstract">

  • trunk/doc/development/plugins/import/index.html

    r3675 r3948  
    2929</head>
    3030
    31 <body>
     31<body class="old">
    3232
    3333<div class="navigation">
    … …  
    4040
    4141  <h1>Plugins for importing data</h1>
     42  <div class="warning">
     43    NOTE! This document is outdated and has been replaced with newer
     44    documentation. See <a href="../../../html/developerdoc/plugin_developer/plugin_developer.import.html">Plug-in developer: Import plug-ins</a>
     45  </div>
    4246
    4347  <div class="abstract">

  • trunk/doc/development/plugins/index.html

    r3679 r3948  
    2929</head>
    3030
    31 <body>
     31<body class="old">
    3232
    3333<div class="navigation">
    … …  
    4040
    4141  <h1>How to write plug-ins</h1>
     42  <div class="warning">
     43    NOTE! This document is outdated and has been replaced with newer
     44    documentation. See <a href="../../html/developerdoc/plugin_developer/plugin_developer.html">Plug-in developer</a>
     45  </div>
    4246
    4347  <div class="abstract">

  • trunk/doc/development/plugins/storage/index.html

    r3679 r3948  
    3030</head>
    3131
    32 <body>
     32<body class="old">
    3333
    3434<div class="navigation">
    … …  
    4141
    4242  <h1>Plugins for secondary file storage</h1>
     43  <div class="warning">
     44    NOTE! This document is outdated and has been replaced with newer
     45    documentation. See <a href="../../../html/developerdoc/plugin_developer/plugin_developer.other.html">Plug-in developer: Secondary file storage plugins</a>
     46  </div>
    4347
    4448  <div class="abstract">

  • trunk/doc/styles.css

    r3681 r3948  
    3030}
    3131
     32
    3233td, th {
    3334  font-family: verdana, arial, sans-serif;
    … …  
    203204  background: #E0E0E0;
    204205}
    205 
    206 
    207 
     206.old, .old a {
     207  color: #cccccc;     
     208}
     209.old .warning {
     210  color: #000000;
     211  margin-bottom: 10px;
     212}
     213
     214.old .warning a {
     215  color: #0000FF;
     216}
     217
     218.old img {
     219  opacity: 0.3;
     220  filter: alpha(opacity=30);
     221}
     222
     223

  • trunk/src/core/net/sf/basedb/core/ContextKey.java

    r3679 r3948  
    2828  @author Nicklas
    2929  @version 2.0
    30   @see <a href="../../../../../../development/overview/data/clients.html">Session and client overview</a>
     30  @see <a href="../../../../../html/developerdoc/api/data_api.clients.html">Session and client overview</a>
    3131  @base.modified $Date$
    3232*/

  • trunk/src/core/net/sf/basedb/core/data/AnnotatableData.java

    r3679 r3948  
    5858  @see AnnotationTypeData
    5959  @see net.sf.basedb.core.Annotatable
    60   @see <a href="../../../../../../development/overview/data/annotations.html">Annotations overview</a>
     60  @see <a href="../../../../../../html/developerdoc/api/data_api.annotations.html">Annotations overview</a>
    6161*/
    6262public interface AnnotatableData

  • trunk/src/core/net/sf/basedb/core/data/AnnotatedData.java

    r3679 r3948  
    3434  @see AnnotatableData
    3535  @see net.sf.basedb.core.AnnotatedItem
    36   @see <a href="../../../../../../development/overview/data/annotations.html">Annotation overview</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.annotations.html">Annotation overview</a>
    3737*/
    3838public abstract class AnnotatedData

  • trunk/src/core/net/sf/basedb/core/data/AnnotationData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.Annotation
    35   @see <a href="../../../../../../development/overview/data/annotations.html">Annotations overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.annotations.html">Annotations overview</a>
    3636  @hibernate.class table="`Annotations`" lazy="false"
    3737 */

  • trunk/src/core/net/sf/basedb/core/data/AnnotationSetData.java

    r3679 r3948  
    3636  @version 2.0
    3737  @see net.sf.basedb.core.AnnotationSet
    38   @see <a href="../../../../../../development/overview/data/annotations.html">Annotations overview</a>
     38  @see <a href="../../../../../../html/developerdoc/api/data_api.annotations.html">Annotations overview</a>
    3939  @hibernate.class table="`AnnotationSets`" lazy="true" batch-size="10"
    4040 */

  • trunk/src/core/net/sf/basedb/core/data/AnnotationTypeCategoryData.java

    r3675 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.AnnotationTypeCategory
    33   @see <a href="../../../../../../development/overview/data/annotations.html">Annotations overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.annotations.html">Annotations overview</a>
    3434  @base.modified $Date: 2006-04-18 10:48:02 +0100 (Tue, 18 Apr 2006) $
    3535  @hibernate.class table="`AnnotationTypeCategories`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/AnnotationTypeData.java

    r3679 r3948  
    3636  @version 2.0
    3737  @see net.sf.basedb.core.AnnotationType
    38   @see <a href="../../../../../../development/overview/data/annotations.html">Annotations overview</a>
     38  @see <a href="../../../../../../html/developerdoc/api/data_api.annotations.html">Annotations overview</a>
    3939  @base.modified $Date$
    4040  @hibernate.class table="`AnnotationTypes`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/AnyToAnyData.java

    r3675 r3948  
    3232  @see net.sf.basedb.core.AnyToAny
    3333  @base.modified $Date$
    34   @see <a href="../../../../../../development/overview/data/misc.html">Misc overview</a>
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.misc.html">Misc overview</a>
    3535  @hibernate.class table="`AnyToAny`" lazy="false"
    3636*/

  • trunk/src/core/net/sf/basedb/core/data/ArrayBatchData.java

    r3679 r3948  
    3434  @version 2.0
    3535  @see net.sf.basedb.core.ArrayBatch
    36   @see <a href="../../../../../../development/overview/data/slides.html">Array LIMS - slides overview</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.arrays.html">Array LIMS - arrays overview</a>
    3737  @base.modified $Date$
    3838  @hibernate.class table="`ArrayBatches`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/ArrayDesignBlockData.java

    r3679 r3948  
    3434  @version 2.0
    3535  @see net.sf.basedb.core.ArrayDesignBlock
    36   @see <a href="../../../../../../development/overview/data/slides.html">Array LIMS - slides overview</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.arrays.html">Array LIMS - arrays overview</a>
    3737  @base.modified $Date$
    3838  @hibernate.class table="`ArrayDesignBlocks`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/ArrayDesignData.java

    r3820 r3948  
    3434  @version 2.0
    3535  @see net.sf.basedb.core.ArrayDesign
    36   @see <a href="../../../../../../development/overview/data/slides.html">Array LIMS - slides overview</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.arrays.html">Array LIMS - arrays overview</a>
    3737  @base.modified $Date$
    3838  @hibernate.class table="`ArrayDesigns`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/ArrayDesignPlateData.java

    r3679 r3948  
    3232  @see net.sf.basedb.core.ArrayDesign
    3333  @see net.sf.basedb.core.Plate
    34   @see <a href="../../../../../../development/overview/data/slides.html">Array LIMS - slides overview</a>
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.arrays.html">Array LIMS - arrays overview</a>
    3535  @base.modified $Date$
    3636  @hibernate.class table="`ArrayDesignPlates`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/ArraySlideData.java

    r3679 r3948  
    3131 @version 2.0
    3232 @see net.sf.basedb.core.ArraySlide
    33  @see <a href="../../../../../../development/overview/data/slides.html">Array LIMS - slides overview</a>
     33 @see <a href="../../../../../../html/developerdoc/api/data_api.arrays.html">Array LIMS - arrays overview</a>
    3434 @base.modified $Date$
    3535 @hibernate.class table="`ArraySlides`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/BasicData.java

    r3679 r3948  
    4444  @author Nicklas
    4545  @version 2.0
    46   @see <a href="../../../../../../development/overview/data/basic.html">Basic classes and interfaces</a>
     46  @see <a href="../../../../../../html/developerdoc/api/data_api.basic.html">Basic classes and interfaces</a>
    4747*/
    4848public abstract class BasicData

  • trunk/src/core/net/sf/basedb/core/data/BatchableData.java

    r3679 r3948  
    3434  @version 2.0
    3535  @see net.sf.basedb.core.BasicBatcher
    36   @see <a href="../../../../../../development/overview/data/basic.html">Basic classes and interfaces</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.basic.html">Basic classes and interfaces</a>
    3737  @see <a href="../../../../../../development/overview/core/index.html#batch">Batch processing</a>
    3838*/

  • trunk/src/core/net/sf/basedb/core/data/BioAssayData.java

    r3679 r3948  
    3434  @version 2.0
    3535  @see net.sf.basedb.core.BioAssay
    36   @see <a href="../../../../../../development/overview/data/experiments.html">Experiments and analysis overview</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.experiments.html">Experiments and analysis overview</a>
    3737  @base.modified $Date$
    3838  @hibernate.class table="`BioAssays`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/BioAssaySetData.java

    r3679 r3948  
    3535  @version 2.0
    3636  @see net.sf.basedb.core.BioAssaySet
    37   @see <a href="../../../../../../development/overview/data/experiments.html">Experiments and analysis overview</a>
     37  @see <a href="../../../../../../html/developerdoc/api/data_api.experiments.html">Experiments and analysis overview</a>
    3838  @base.modified $Date$
    3939  @hibernate.class table="`BioAssaySets`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/BioMaterialData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.BioMaterial
    33   @see <a href="../../../../../../development/overview/data/biomaterial.html">Biomaterials overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.biomaterials.html">Biomaterials overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.class table="`BioMaterials`" lazy="false" discriminator-value="-1"

  • trunk/src/core/net/sf/basedb/core/data/BioMaterialEventData.java

    r3679 r3948  
    3535  @version 2.0
    3636  @see net.sf.basedb.core.BioMaterialEvent
    37   @see <a href="../../../../../../development/overview/data/biomaterial.html">Biomaterials overview</a>
     37  @see <a href="../../../../../../html/developerdoc/api/data_api.biomaterials.html">Biomaterials overview</a>
    3838  @base.modified $Date$
    3939  @hibernate.class table="`BioMaterialEvents`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/BioSourceData.java

    r3679 r3948  
    3232  @version 2.0
    3333  @see net.sf.basedb.core.BioSource
    34   @see <a href="../../../../../../development/overview/data/biomaterial.html">Biomaterials overview</a>
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.biomaterials.html">Biomaterials overview</a>
    3535  @base.modified $Date$
    3636  @hibernate.subclass discriminator-value="1"

  • trunk/src/core/net/sf/basedb/core/data/BooleanParameterValueData.java

    r3679 r3948  
    3333  @author Nicklas, Samuel
    3434  @version 2.0
    35   @see <a href="../../../../../../development/overview/data/parameters.html">Parameters overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.parameters.html">Parameters overview</a>
    3636  @hibernate.subclass discriminator-value="7"
    3737  @base.modified $Date$

  • trunk/src/core/net/sf/basedb/core/data/ClientData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.Client
    35   @see <a href="../../../../../../development/overview/data/clients.html">Session and client overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.clients.html">Session and client overview</a>
    3636  @hibernate.class table="`Clients`" lazy="false"
    3737*/

  • trunk/src/core/net/sf/basedb/core/data/ClientDefaultSettingData.java

    r3679 r3948  
    2929  @author nicklas, enell
    3030  @see net.sf.basedb.core.ClientDefaultSetting
    31   @see <a href="../../../../../../development/overview/data/clients.html">Session and client overview</a>
     31  @see <a href="../../../../../../html/developerdoc/api/data_api.clients.html">Session and client overview</a>
    3232  @hibernate.class table="`ClienDefaultSettings`" lazy="false"
    3333  @version 2.0

  • trunk/src/core/net/sf/basedb/core/data/ColoringData.java

    r3675 r3948  
    3131  @version 2.0
    3232  @base.modified $Date$
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.misc.html">Data API - Other classes</a>
    3334*/
    3435public class ColoringData

  • trunk/src/core/net/sf/basedb/core/data/CommonData.java

    r3679 r3948  
    3232  @author Nicklas
    3333  @version 2.0
    34   @see <a href="../../../../../../development/overview/data/basic.html">Basic classes and interfaces</a>
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.basic.html">Basic classes and interfaces</a>
    3535*/
    3636public abstract class CommonData

  • trunk/src/core/net/sf/basedb/core/data/ContextData.java

    r3679 r3948  
    3636  @version 2.0
    3737  @see net.sf.basedb.core.ItemContext
    38   @see <a href="../../../../../../development/overview/data/clients.html">Session and client overview</a>
     38  @see <a href="../../../../../../html/developerdoc/api/data_api.clients.html">Session and client overview</a>
    3939  @base.modified $Date$
    4040  @hibernate.class table="`Contexts`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/ContextIndex.java

    r3679 r3948  
    3131  @author Nicklas
    3232  @version 2.0
    33   @see <a href="../../../../../../development/overview/data/clients.html">Session and client overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.clients.html">Session and client overview</a>
    3434  @base.modified $Date$
    3535*/

  • trunk/src/core/net/sf/basedb/core/data/DataCubeColumnData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.DataCubeColumn
    33   @see <a href="../../../../../../development/overview/data/experiments.html">Experiments and analysis overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.experiments.html">Experiments and analysis overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.class table="`DataCubeColumns`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/DataCubeData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.DataCube
    35   @see <a href="../../../../../../development/overview/data/experiments.html">Experiments and analysis overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.experiments.html">Experiments and analysis overview</a>
    3636  @base.modified $Date$
    3737  @hibernate.class table="`DataCubes`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/DataCubeExtraValueData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.DataCubeExtraValue
    33   @see <a href="../../../../../../development/overview/data/experiments.html">Experiments and analysis overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.experiments.html">Experiments and analysis overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.class table="`DataCubeExtraValues`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/DataCubeFilterData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.DataCubeFilter
    33   @see <a href="../../../../../../development/overview/data/experiments.html">Experiments and analysis overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.experiments.html">Experiments and analysis overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.class table="`DataCubeFilters`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/DataCubeLayerData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.DataCubeLayer
    33   @see <a href="../../../../../../development/overview/data/experiments.html">Experiments and analysis overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.experiments.html">Experiments and analysis overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.class table="`DataCubeLayers`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/DataFileTypeData.java

    r3835 r3948  
    3535  @see net.sf.basedb.core.DataFileType
    3636  @base.modified $Date$
     37  @see <a href="../../../../../../html/developerdoc/api/data_api.platforms.html">Data API - Experimental platforms</a>
    3738  @hibernate.class table="`DataFileTypes`" lazy="false"
    3839*/

  • trunk/src/core/net/sf/basedb/core/data/DateParameterValueData.java

    r3679 r3948  
    3434  @author Samuel
    3535  @version 2.0
    36   @see <a href="../../../../../../development/overview/data/parameters.html">Parameters overview</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.parameters.html">Parameters overview</a>
    3737  @hibernate.subclass discriminator-value="8"
    3838  @base.modified $Date$

  • trunk/src/core/net/sf/basedb/core/data/DirectoryData.java

    r3719 r3948  
    3434  @version 2.0
    3535  @see net.sf.basedb.core.Directory
    36   @see <a href="../../../../../../development/overview/data/file.html">File and directory overview</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.files.html">File and directory overview</a>
    3737  @base.modified $Date$
    3838  @hibernate.class table="`Directories`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/DiskConsumableData.java

    r3679 r3948  
    6262  @see DiskUsageData
    6363  @see net.sf.basedb.core.DiskConsumable
    64   @see <a href="../../../../../../development/overview/data/authentication.html">Authentication overview</a>
     64  @see <a href="../../../../../../html/developerdoc/api/data_api.quota.html">Quota overview</a>
    6565*/
    6666public interface DiskConsumableData

  • trunk/src/core/net/sf/basedb/core/data/DiskUsageData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.DiskUsage
    35   @see <a href="../../../../../../development/overview/data/quota.html">Quota overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.quota.html">Quota overview</a>
    3636  @base.modified $Date$
    3737  @hibernate.class table="`DiskUsage`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/DoubleParameterValueData.java

    r3679 r3948  
    3333  @author Nicklas, Samuel
    3434  @version 2.0
    35   @see <a href="../../../../../../development/overview/data/parameters.html">Parameters overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.parameters.html">Parameters overview</a>
    3636  @hibernate.subclass discriminator-value="4"
    3737  @base.modified $Date: 2005-07-05 15:51:30 +0200 (ti, 05 jul 2005) $

  • trunk/src/core/net/sf/basedb/core/data/ExperimentData.java

    r3679 r3948  
    3636  @version 2.0
    3737  @see net.sf.basedb.core.Experiment
    38   @see <a href="../../../../../../development/overview/data/experiments.html">Experiments and analysis overview</a>
     38  @see <a href="../../../../../../html/developerdoc/api/data_api.experiments.html">Experiments and analysis overview</a>
    3939  @base.modified $Date$
    4040  @hibernate.class table="`Experiments`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/ExtraValueData.java

    r3679 r3948  
    3232  @version 2.0
    3333  @see net.sf.basedb.core.ExtraValue
    34   @see <a href="../../../../../../development/overview/data/experiments.html">Experiments and analysis overview</a>
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.experiments.html">Experiments and analysis overview</a>
    3535  @hibernate.class table="`ExtraValues`" lazy="false"
    3636  @base.modified $Date$

  • trunk/src/core/net/sf/basedb/core/data/ExtraValueTypeData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.ExtraValueType
    35   @see <a href="../../../../../../development/overview/data/experiments.html">Experiments and analysis overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.experiments.html">Experiments and analysis overview</a>
    3636  @hibernate.class table="`ExtraValueTypes`" lazy="true"
    3737  @base.modified $Date$

  • trunk/src/core/net/sf/basedb/core/data/ExtractData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.Extract
    33   @see <a href="../../../../../../development/overview/data/biomaterial.html">Biomaterials overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.biomaterials.html">Biomaterials overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.subclass discriminator-value="3" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/FeatureData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.Feature
    33   @see <a href="../../../../../../development/overview/data/slides.html">Array LIMS - slides overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.arrays.html">Array LIMS - arrays overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.class table="`Features`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/FileAttachableData.java

    r3679 r3948  
    5454  @see BasicData
    5555  @see <a href="../../../../../../development/overview/data/files.html">File and directory overview</a>
    56   @see <a href="../../../../../../development/overview/data/basic.html">Basic classes and interfaces</a>
     56  @see <a href="../../../../../../html/developerdoc/api/data_api.basic.html">Basic classes and interfaces</a>
    5757*/
    5858public interface FileAttachableData

  • trunk/src/core/net/sf/basedb/core/data/FileData.java

    r3719 r3948  
    3434  @version 2.0
    3535  @see net.sf.basedb.core.File
    36   @see <a href="../../../../../../development/overview/data/file.html">File and directory overview</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.files.html">File and directory overview</a>
    3737  @base.modified $Date$
    3838  @hibernate.class table="`Files`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/FileSetData.java

    r3820 r3948  
    3535  @version 2.5
    3636  @see net.sf.basedb.core.FileSet
     37  @see <a href="../../../../../../html/developerdoc/api/data_api.platforms.html">Data API - Experimental platforms</a>
    3738  @base.modified $Date$
    3839  @hibernate.class table="`FileSets`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/FileSetMemberData.java

    r3820 r3948  
    3232  @version 2.5
    3333  @see net.sf.basedb.core.FileSetMember
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.platforms.html">Data API - Experimental platforms</a>
    3435  @base.modified $Date$
    3536  @hibernate.class table="`FileSetMembers`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/FileStoreEnabledData.java

    r3820 r3948  
    5252  @author Nicklas
    5353  @version 2.5
     54  @see <a href="../../../../../../html/developerdoc/api/data_api.platforms.html">Data API - Experimental platforms</a>
    5455  @base.modified $Date$
    5556*/

  • trunk/src/core/net/sf/basedb/core/data/FileTypeData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.File
    33   @see <a href="../../../../../../development/overview/data/file.html">File and directory overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.files.html">File and directory overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.class table="`FileTypes`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/FileTypeIndex.java

    r3820 r3948  
    3333  @author Nicklas
    3434  @version 2.5
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.platforms.html">Data API - Experimental platforms</a>
    3536  @base.modified $Date$
    3637*/

  • trunk/src/core/net/sf/basedb/core/data/FloatParameterValueData.java

    r3679 r3948  
    3333  @author Nicklas, Samuel
    3434  @version 2.0
    35   @see <a href="../../../../../../development/overview/data/parameters.html">Parameters overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.parameters.html">Parameters overview</a>
    3636  @hibernate.subclass discriminator-value="3"
    3737  @base.modified $Date$

  • trunk/src/core/net/sf/basedb/core/data/FormulaData.java

    r3679 r3948  
    3535  @version 2.0
    3636  @see net.sf.basedb.core.Formula
    37   @see <a href="../../../../../../development/overview/data/experiments.html">Session and client overview</a>
     37  @see <a href="../../../../../../html/developerdoc/api/data_api.misc.html">Data API - Other classes</a>
    3838  @hibernate.class table="`Formulas`" lazy="false"
    3939*/

  • trunk/src/core/net/sf/basedb/core/data/GlobalDefaultSettingData.java

    r3679 r3948  
    2929  @author nicklas
    3030  @see net.sf.basedb.core.GlobalDefaultSetting
    31   @see <a href="../../../../../../development/overview/data/clients.html">Session and client overview</a>
     31  @see <a href="../../../../../../html/developerdoc/api/data_api.clients.html">Session and client overview</a>
    3232  @hibernate.class table="`GlobalDefaultSettings`" lazy="false"
    3333  @version 2.0

  • trunk/src/core/net/sf/basedb/core/data/GroupData.java

    r3679 r3948  
    3535  @version 2.0
    3636  @see net.sf.basedb.core.Group
    37   @see <a href="../../../../../../development/overview/data/authentication.html">Authentication overview</a>
     37  @see <a href="../../../../../../html/developerdoc/api/data_api.authentication.html">Authentication overview</a>
    3838  @base.modified $Date$
    3939  @hibernate.class table="`Groups`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/GuiContextData.java

    r3679 r3948  
    3535  @author Nicklas
    3636  @version 2.0
    37   @see <a href="../../../../../../development/overview/data/plugins.html">Plugins ovreview</a>
     37  @see <a href="../../../../../../html/developerdoc/api/data_api.plugins.html">Plugins ovreview</a>
    3838  @base.modified $Date$
    3939*/

  • trunk/src/core/net/sf/basedb/core/data/HardwareData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.Hardware
    33   @see <a href="../../../../../../development/overview/data/wares.html">Hardware and software overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.wares.html">Hardware and software overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.class table="`Hardware`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/HardwareTypeData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.HardwareType
    35   @see <a href="../../../../../../development/overview/data/wares.html">Hardware and software overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.wares.html">Hardware and software overview</a>
    3636  @base.modified $Date$
    3737  @hibernate.class table="`HardwareTypes`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/HelpData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.Help
    33   @see <a href="../../../../../../development/overview/data/clients.html">Session and client overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.clients.html">Session and client overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.class table="`HelpTexts`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/HybridizationData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.Hybridization
    35   @see <a href="../../../../../../development/overview/data/hybridizations.html">Hybridzations and raw data overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.rawdata.html">Hybridzations and raw data overview</a>
    3636  @base.modified $Date$
    3737  @hibernate.class table="`Hybridizations`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/IdentifiableData.java

    r3679 r3948  
    4646  @version 2.0
    4747  @see BasicData
    48   @see <a href="../../../../../../development/overview/data/basic.html">Basic classes and interfaces</a>
     48  @see <a href="../../../../../../html/developerdoc/api/data_api.basic.html">Basic classes and interfaces</a>
    4949*/
    5050public interface IdentifiableData

  • trunk/src/core/net/sf/basedb/core/data/ImageData.java

    r3679 r3948  
    3232  @version 2.0
    3333  @see net.sf.basedb.core.Image
    34   @see <a href="../../../../../../development/overview/data/hybridizations.html">Hybridzations and raw data overview</a>
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.rawdata.html">Hybridzations and raw data overview</a>
    3535  @base.modified $Date$
    3636  @hibernate.class table="`Images`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/IntegerParameterValueData.java

    r3679 r3948  
    3333  @author Nicklas, Samuel
    3434  @version 2.0
    35   @see <a href="../../../../../../development/overview/data/parameters.html">Parameters overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.parameters.html">Parameters overview</a>
    3636  @hibernate.subclass discriminator-value="1"
    3737  @base.modified $Date$

  • trunk/src/core/net/sf/basedb/core/data/ItemKeyData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.ItemKey
    35   @see <a href="../../../../../../development/overview/data/authentication.html">Authentication overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.authentication.html">Authentication overview</a>
    3636  @base.modified $Date$
    3737  @hibernate.subclass discriminator-value="1"

  • trunk/src/core/net/sf/basedb/core/data/ItemParameterValueData.java

    r3679 r3948  
    3535  @author Nicklas, Samuel
    3636  @version 2.0
    37   @see <a href="../../../../../../development/overview/data/parameters.html">Parameters overview</a>
     37  @see <a href="../../../../../../html/developerdoc/api/data_api.parameters.html">Parameters overview</a>
    3838  @hibernate.subclass discriminator-value="10"
    3939  @base.modified $Date$

  • trunk/src/core/net/sf/basedb/core/data/JobAgentData.java

    r3675 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.JobAgent
    35   @see <a href="../../../../../../development/overview/data/plugins.html">Plugin/jobs overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.plugins.html">Plugin/jobs overview</a>
    3636  @base.modified $Date$
    3737  @hibernate.class table="`JobAgents`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/JobAgentSettingsData.java

    r3675 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.JobAgentSettings
    33   @see <a href="../../../../../../development/overview/data/plugins.html">Plugin/jobs overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.plugins.html">Plugin/jobs overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.class table="`JobAgentSettings`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/JobData.java

    r3679 r3948  
    3737  @version 2.0
    3838  @see net.sf.basedb.core.Job
    39   @see <a href="../../../../../../development/overview/data/plugins.html">Plugin/jobs overview</a>
     39  @see <a href="../../../../../../html/developerdoc/api/data_api.plugins.html">Plugin/jobs overview</a>
    4040  @base.modified $Date$
    4141  @hibernate.class table="`Jobs`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/KeyData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.Key
    33   @see <a href="../../../../../../development/overview/data/authentication.html">Authentication overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.authentication.html">Authentication overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.class table="`Keys`" lazy="true" discriminator-value="-1"

  • trunk/src/core/net/sf/basedb/core/data/LabelData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.Label
    33   @see <a href="../../../../../../development/overview/data/biomaterial.html">Biomaterials overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.biomaterials.html">Biomaterials overview</a>
    3434  @hibernate.class table="`Labels`" lazy="false"
    3535  @base.modified $Date$

  • trunk/src/core/net/sf/basedb/core/data/LabeledExtractData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.LabeledExtract
    33   @see <a href="../../../../../../development/overview/data/biomaterial.html">Biomaterials overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.biomaterials.html">Biomaterials overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.subclass discriminator-value="4" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/LongParameterValueData.java

    r3679 r3948  
    3333  @author Nicklas, Samuel
    3434  @version 2.0
    35   @see <a href="../../../../../../development/overview/data/parameters.html">Parameters overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.parameters.html">Parameters overview</a>
    3636  @hibernate.subclass discriminator-value="2"
    3737  @base.modified $Date: 2005-07-14 09:57:11 +0200 (to, 14 jul 2005) $

  • trunk/src/core/net/sf/basedb/core/data/MappingCoordinate.java

    r3679 r3948  
    3737  @version 2.0
    3838  @see PlateMappingData
    39   @see <a href="../../../../../../development/overview/data/plates.html">Array LIMS - Plates overview</a>
     39  @see <a href="../../../../../../html/developerdoc/api/data_api.plates.html">Array LIMS - Plates overview</a>
    4040  @base.modified $Date$
    4141*/

  • trunk/src/core/net/sf/basedb/core/data/MeasuredBioMaterialData.java

    r3679 r3948  
    3434  @version 2.0
    3535  @see net.sf.basedb.core.MeasuredBioMaterial
    36   @see <a href="../../../../../../development/overview/data/biomaterial.html">Biomaterials overview</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.biomaterials.html">Biomaterials overview</a>
    3737  @base.modified $Date$
    3838  @hibernate.subclass discriminator-value="-1" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/MessageData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.Message
    35   @see <a href="../../../../../../development/overview/data/plugins.html">Plugin/jobs overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.misc.html">Data API - Other classes</a>
    3636  @hibernate.class table="`Messages`" lazy="false"
    3737*/

  • trunk/src/core/net/sf/basedb/core/data/MimeTypeData.java

    r3719 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.MimeType
    33   @see <a href="../../../../../../development/overview/data/files.html">File and directory overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.files.html">File and directory overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.class table="`MimeTypes`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/NameableData.java

    r3679 r3948  
    6161  @version 2.0
    6262  @see CommonData
    63   @see <a href="../../../../../../development/overview/data/basic.html">Basic classes and interfaces</a>
     63  @see <a href="../../../../../../html/developerdoc/api/data_api.basic.html">Basic classes and interfaces</a>
    6464*/
    6565public interface NameableData

  • trunk/src/core/net/sf/basedb/core/data/NewsData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.News
    35   @see <a href="../../../../../../development/overview/data/misc.html">Misc overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.misc.html">Misc overview</a>
    3636  @hibernate.class table="`News`" lazy="false"
    3737 */

  • trunk/src/core/net/sf/basedb/core/data/OwnableData.java

    r3679 r3948  
    5353  @see OwnedData
    5454  @see net.sf.basedb.core.Ownable
    55   @see <a href="../../../../../../development/overview/data/authentication.html">Authentication overview</a>
    56   @see <a href="../../../../../../development/overview/data/basic.html">Basic classes and interfaces</a>
     55  @see <a href="../../../../../../html/developerdoc/api/data_api.authentication.html">Authentication overview</a>
     56  @see <a href="../../../../../../html/developerdoc/api/data_api.basic.html">Basic classes and interfaces</a>
    5757*/
    5858public interface OwnableData

  • trunk/src/core/net/sf/basedb/core/data/OwnedData.java

    r3679 r3948  
    3232  @version 2.0
    3333  @see net.sf.basedb.core.OwnedItem
    34   @see <a href="../../../../../../development/overview/data/authentication.html">Authentication overview</a>
    35   @see <a href="../../../../../../development/overview/data/basic.html">Basic classes and interfaces</a>
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.authentication.html">Authentication overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.basic.html">Basic classes and interfaces</a>
    3636*/
    3737public abstract class OwnedData

  • trunk/src/core/net/sf/basedb/core/data/ParameterValueData.java

    r3679 r3948  
    3232  @author Nicklas, Samuel
    3333  @version 2.0
    34   @see <a href="../../../../../../development/overview/data/parameters.html">Parameters overview</a>
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.parameters.html">Parameters overview</a>
    3535  @hibernate.class table="`ParameterValues`" discriminator-value="-1" lazy="true" batch-size="10"
    3636  @hibernate.discriminator column="`discriminator`" type="int"

  • trunk/src/core/net/sf/basedb/core/data/PasswordData.java

    r3679 r3948  
    3232  @author Nicklas
    3333  @version 2.0
    34   @see <a href="../../../../../../development/overview/data/authentication.html">Authentication overview</a>
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.authentication.html">Authentication overview</a>
    3535  @hibernate.class table="`Passwords`" lazy="true"
    3636*/

  • trunk/src/core/net/sf/basedb/core/data/PlateCoordinate.java

    r3679 r3948  
    3737  @version 2.0
    3838  @see PlateData
    39   @see <a href="../../../../../../development/overview/data/plates.html">Array LIMS - Plates overview</a>
     39  @see <a href="../../../../../../html/developerdoc/api/data_api.plates.html">Array LIMS - Plates overview</a>
    4040  @base.modified $Date$
    4141*/

  • trunk/src/core/net/sf/basedb/core/data/PlateData.java

    r3679 r3948  
    3535  @version 2.0
    3636  @see net.sf.basedb.core.Plate
    37   @see <a href="../../../../../../development/overview/data/plates.html">Array LIMS - Plates overview</a>
     37  @see <a href="../../../../../../html/developerdoc/api/data_api.plates.html">Array LIMS - Plates overview</a>
    3838  @base.modified $Date$
    3939  @hibernate.class table="`Plates`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/PlateEventData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.PlateEvent
    35   @see <a href="../../../../../../development/overview/data/plates.html">Array LIMS - Plates overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.plates.html">Array LIMS - Plates overview</a>
    3636  @base.modified $Date$
    3737  @hibernate.class table="`PlateEvents`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/PlateEventTypeData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.PlateEventType
    35   @see <a href="../../../../../../development/overview/data/plates.html">Array LIMS - Plates overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.plates.html">Array LIMS - Plates overview</a>
    3636  @base.modified $Date$
    3737  @hibernate.class table="`PlateEventTypes`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/PlateGeometryData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.PlateGeometry
    33   @see <a href="../../../../../../development/overview/data/plates.html">Array LIMS - Plates overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.plates.html">Array LIMS - Plates overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.class table="`PlateGeometries`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/PlateMappingData.java

    r3679 r3948  
    3434  @version 2.0
    3535  @see net.sf.basedb.core.PlateMapping
    36   @see <a href="../../../../../../development/overview/data/plates.html">Array LIMS - Plates overview</a>
     36  @see <a href="v">Array LIMS - Plates overview</a>
    3737  @base.modified $Date$
    3838  @hibernate.class table="`PlateMappings`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/PlateTypeData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.PlateType
    35   @see <a href="../../../../../../development/overview/data/plates.html">Array LIMS - Plates overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.plates.html">Array LIMS - Plates overview</a>
    3636  @base.modified $Date$
    3737  @hibernate.class table="`PlateTypes`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/PlatformData.java

    r3835 r3948  
    3434  @version 2.5
    3535  @see net.sf.basedb.core.Platform
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.platforms.html">Data API - Experimental platforms</a>
    3637  @base.modified $Date$
    3738  @hibernate.class table="`Platforms`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/PlatformFileTypeData.java

    r3820 r3948  
    3131  @version 2.5
    3232  @see net.sf.basedb.core.PlatformFileType
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.platforms.html">Data API - Experimental platforms</a>
    3334  @base.modified $Date$
    3435  @hibernate.class table="`PlatformFileTypes`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/PlatformVariantData.java

    r3835 r3948  
    3232  @version 2.5
    3333  @see net.sf.basedb.core.PlatformVariant
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.platforms.html">Data API - Experimental platforms</a>
    3435  @base.modified $Date$
    3536  @hibernate.class table="`PlatformVariants`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/PluginConfigurationData.java

    r3679 r3948  
    3535  @version 2.0
    3636  @see net.sf.basedb.core.PluginConfiguration
    37   @see <a href="../../../../../../development/overview/data/plugins.html">Plugins</a>
     37  @see <a href="../../../../../../html/developerdoc/api/data_api.plugins.html">Plugins</a>
    3838  @hibernate.class table="`PluginConfigurations`" lazy="false"
    3939*/

  • trunk/src/core/net/sf/basedb/core/data/PluginDefinitionData.java

    r3871 r3948  
    3838  @version 2.0
    3939  @see net.sf.basedb.core.PluginDefinition
    40   @see <a href="../../../../../../development/overview/data/plugins.html">Plugins</a>
     40  @see <a href="../../../../../../html/developerdoc/api/data_api.plugins.html">Plugins</a>
    4141  @hibernate.class table="`PluginDefinitions`" lazy="false"
    4242*/

  • trunk/src/core/net/sf/basedb/core/data/PluginPermission.java

    r3675 r3948  
    2828  @author Martin
    2929  @version 2.1
    30   @see <a href="../../../../../../development/overview/data/authentication.html">Authentication overview</a>
     30  @see <a href="../../../../../../html/developerdoc/api/data_api.authentication.html">Authentication overview</a>
    3131*/
    3232public class PluginPermission

  • trunk/src/core/net/sf/basedb/core/data/PluginTypeData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.PluginType
    35   @see <a href="../../../../../../development/overview/data/plugins.html">Plugins</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.plugins.html">Plugins</a>
    3636  @hibernate.class table="`PluginTypes`" lazy="false"
    3737  @base.modified $Date$

  • trunk/src/core/net/sf/basedb/core/data/ProjectData.java

    r3679 r3948  
    3535  @version 2.0
    3636  @see net.sf.basedb.core.Project
    37   @see <a href="../../../../../../development/overview/data/authentication.html">Authentication overview</a>
     37  @see <a href="../../../../../../html/developerdoc/api/data_api.authentication.html">Authentication overview</a>
    3838  @base.modified $Date$
    3939  @hibernate.class table="`Projects`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/ProjectKeyData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.ProjectKey
    35   @see <a href="../../../../../../development/overview/data/authentication.html">Authentication overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.authentication.html">Authentication overview</a>
    3636  @base.modified $Date$
    3737  @hibernate.subclass discriminator-value="2"

  • trunk/src/core/net/sf/basedb/core/data/PropertyFilterData.java

    r3679 r3948  
    3232  @version 2.0
    3333  @see net.sf.basedb.core.ItemContext
    34   @see <a href="../../../../../../development/overview/data/clients.html">Session and client overview</a>
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.clients.html">Session and client overview</a>
    3535  @base.modified $Date$
    3636*/

  • trunk/src/core/net/sf/basedb/core/data/ProtocolData.java

    r3679 r3948  
    3232  @version 2.0
    3333  @see net.sf.basedb.core.Protocol
    34   @see <a href="../../../../../../development/overview/data/protocols.html">Protocol overview</a>
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.protocols.html">Protocol overview</a>
    3535  @hibernate.class table="`Protocols`" lazy="true"
    3636*/

  • trunk/src/core/net/sf/basedb/core/data/ProtocolTypeData.java

    r3679 r3948  
    3232  @version 2.0
    3333  @see net.sf.basedb.core.ProtocolType
    34   @see <a href="../../../../../../development/overview/data/protocols.html">Protocol overview</a>
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.protocols.html">Protocol overview</a>
    3535  @hibernate.class table="`ProtocolTypes`" lazy="false"
    3636 

  • trunk/src/core/net/sf/basedb/core/data/QuotaData.java

    r3679 r3948  
    3434  @version 2.0
    3535  @see net.sf.basedb.core.Quota
    36   @see <a href="../../../../../../development/overview/data/quota.html">Quota overview</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.quota.html">Quota overview</a>
    3737  @hibernate.class table="`Quota`" lazy="true"
    3838  @base.modified $Date$

  • trunk/src/core/net/sf/basedb/core/data/QuotaIndex.java

    r3679 r3948  
    3636  @author enell
    3737  @version 2.0
    38   @see <a href="../../../../../../development/overview/data/quota.html">Quota overview</a>
     38  @see <a href="../../../../../../html/developerdoc/api/data_api.quota.html">Quota overview</a>
    3939  @base.modified $Date$
    4040*/

  • trunk/src/core/net/sf/basedb/core/data/QuotaTypeData.java

    r3679 r3948  
    3030  @author enell
    3131  @version 2.0
    32   @see <a href="../../../../../../development/overview/data/quota.html">Quota overview</a>
     32  @see <a href="../../../../../../html/developerdoc/api/data_api.quota.html">Quota overview</a>
    3333  @base.modified $Date$
    3434  @hibernate.class table="`QuotaTypes`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/RawBioAssayData.java

    r3820 r3948  
    3737  @version 2.0
    3838  @see net.sf.basedb.core.RawBioAssay
    39   @see <a href="../../../../../../development/overview/data/hybridizations.html">Hybridzations and raw data overview</a>
     39  @see <a href="../../../../../../html/developerdoc/api/data_api.rawdata.html">Hybridzations and raw data overview</a>
    4040  @base.modified $Date$
    4141  @hibernate.class table="`RawBioAssays`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/RawData.java

    r3679 r3948  
    3838  @see net.sf.basedb.core.RawDataBatcher
    3939  @see net.sf.basedb.core.RawDataUtil
    40   @see <a href="../../../../../../development/overview/data/hybridizations.html">Hybridzations and raw data overview</a>
     40  @see <a href="../../../../../../html/developerdoc/api/data_api.rawdata.html">Hybridzations and raw data overview</a>
    4141  @base.modified $Date$
    4242*/

  • trunk/src/core/net/sf/basedb/core/data/RemovableData.java

    r3679 r3948  
    5959  @author Nicklas
    6060  @version 2.0
    61   @see <a href="../../../../../../development/overview/data/basic.html">Basic classes and interfaces</a>
     61  @see <a href="../../../../../../html/developerdoc/api/data_api.basic.html">Basic classes and interfaces</a>
    6262*/
    6363public interface RemovableData

  • trunk/src/core/net/sf/basedb/core/data/ReporterData.java

    r3679 r3948  
    4848  @see net.sf.basedb.core.ReporterBatcher
    4949  @see net.sf.basedb.core.ExtendedProperties
    50   @see <a href="../../../../../../development/overview/data/reporters.html">Reporter overview</a>
     50  @see <a href="../../../../../../html/developerdoc/api/data_api.reporters.html">Reporter overview</a>
    5151  @hibernate.class table="`Reporters`" lazy="false"
    5252*/

  • trunk/src/core/net/sf/basedb/core/data/ReporterListData.java

    r3679 r3948  
    3434  @version 2.0
    3535  @see net.sf.basedb.core.ReporterList
    36   @see <a href="../../../../../../development/overview/data/reporters.html">Reporter overview</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.reporters.html">Reporter overview</a>
    3737  @hibernate.class table="`ReporterLists`" lazy="true"
    3838*/

  • trunk/src/core/net/sf/basedb/core/data/ReporterListScoreData.java

    r3675 r3948  
    3636  @version 2.0
    3737  @see net.sf.basedb.core.ReporterList
    38   @see <a href="../../../../../../development/overview/data/reporters.html">Reporter overview</a>
     38  @see <a href="../../../../../../html/developerdoc/api/data_api.reporters.html">Reporter overview</a>
    3939*/
    4040@SuppressWarnings({"serial"})

  • trunk/src/core/net/sf/basedb/core/data/ReporterTypeData.java

    r3679 r3948  
    3636  @version 2.0
    3737  @see net.sf.basedb.core.data.ReporterData
    38   @see <a href="../../../../../../development/overview/data/reporters.html">Reporter overview</a>
     38  @see <a href="../../../../../../html/developerdoc/api/data_api.reporters.html">Reporter overview</a>
    3939  @hibernate.class table="`ReporterTypes`" lazy="true"
    4040*/

  • trunk/src/core/net/sf/basedb/core/data/RoleData.java

    r3679 r3948  
    3535  @version 2.0
    3636  @see net.sf.basedb.core.Role
    37   @see <a href="../../../../../../development/overview/data/authentication.html">Authentication overview</a>
     37  @see <a href="../../../../../../html/developerdoc/api/data_api.authentication.html">Authentication overview</a>
    3838  @base.modified $Date$
    3939  @hibernate.class table="`Roles`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/RoleKeyData.java

    r3679 r3948  
    3434  @version 2.0
    3535  @see net.sf.basedb.core.RoleKey
    36   @see <a href="../../../../../../development/overview/data/authentication.html">Authentication overview</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.authentication.html">Authentication overview</a>
    3737  @base.modified $Date$
    3838  @hibernate.subclass discriminator-value="3"

  • trunk/src/core/net/sf/basedb/core/data/SampleData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.Sample
    33   @see <a href="../../../../../../development/overview/data/biomaterial.html">Biomaterials overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.biomaterials.html">Biomaterials overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.subclass discriminator-value="2" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/ScanData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.Scan
    35   @see <a href="../../../../../../development/overview/data/hybridizations.html">Hybridzations and raw data overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.rawdata.html">Hybridzations and raw data overview</a>
    3636  @base.modified $Date$
    3737  @hibernate.class table="`Scans`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/SessionData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.Session
    35   @see <a href="../../../../../../development/overview/data/clients.html">Session and client overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.clients.html">Session and client overview</a>
    3636  @hibernate.class table="`Sessions`" lazy="false"
    3737*/

  • trunk/src/core/net/sf/basedb/core/data/SettingData.java

    r3679 r3948  
    2929  @version 2.0
    3030  @see net.sf.basedb.core.Setting
    31   @see <a href="../../../../../../development/overview/data/clients.html">Session and client overview</a>
     31  @see <a href="../../../../../../html/developerdoc/api/data_api.clients.html">Session and client overview</a>
    3232*/
    3333public abstract class SettingData

  • trunk/src/core/net/sf/basedb/core/data/ShareableData.java

    r3679 r3948  
    7171  @see SharedData
    7272  @see net.sf.basedb.core.Shareable
    73   @see <a href="../../../../../../development/overview/data/authentication.html">Authentication overview</a>
    74   @see <a href="../../../../../../development/overview/data/basic.html">Basic classes and interfaces</a>
     73  @see <a href="../../../../../../html/developerdoc/api/data_api.authentication.html">Authentication overview</a>
     74  @see <a href="../../../../../../html/developerdoc/api/data_api.basic.html">Basic classes and interfaces</a>
    7575*/
    7676public interface ShareableData

  • trunk/src/core/net/sf/basedb/core/data/SharedData.java

    r3679 r3948  
    3232  @version 2.0
    3333  @see net.sf.basedb.core.SharedItem
    34   @see <a href="../../../../../../development/overview/data/authentication.html">Authentication overview</a>
    35   @see <a href="../../../../../../development/overview/data/basic.html">Basic classes and interfaces</a>
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.authentication.html">Authentication overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.basic.html">Basic classes and interfaces</a>
    3636*/
    3737public abstract class SharedData

  • trunk/src/core/net/sf/basedb/core/data/SoftwareData.java

    r3679 r3948  
    3030  @version 2.0
    3131  @see net.sf.basedb.core.Software
    32   @see <a href="../../../../../../development/overview/data/wares.html">Hardware and software overview</a>
     32  @see <a href="../../../../../../html/developerdoc/api/data_api.wares.html">Hardware and software overview</a>
    3333  @base.modified $Date$
    3434  @hibernate.class table="`Software`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/SoftwareTypeData.java

    r3679 r3948  
    3333  @version 2.0
    3434  @see net.sf.basedb.core.SoftwareType
    35   @see <a href="../../../../../../development/overview/data/wares.html">Hardware and software overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.wares.html">Hardware and software overview</a>
    3636  @base.modified $Date$
    3737  @hibernate.class table="`SoftwareTypes`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/SpotImagesData.java

    r3679 r3948  
    3232  @version 2.0
    3333  @see net.sf.basedb.core.SpotImages
    34   @see <a href="../../../../../../development/overview/data/hybridizations.html">Hybridzations and raw data overview</a>
     34  @see <a href="../../../../../../html/developerdoc/api/data_api.rawdata.html">Hybridzations and raw data overview</a>
    3535  @base.modified $Date$
    3636  @hibernate.class table="`SpotImages`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/StringParameterValueData.java

    r3679 r3948  
    3333  @author Nicklas
    3434  @version 2.0
    35   @see <a href="../../../../../../development/overview/data/parameters.html">Parameters overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.parameters.html">Parameters overview</a>
    3636  @hibernate.subclass discriminator-value="5"
    3737  @base.modified $Date$

  • trunk/src/core/net/sf/basedb/core/data/SystemData.java

    r3820 r3948  
    6060  @author Nicklas
    6161  @version 2.0
    62   @see <a href="../../../../../../development/overview/data/basic.html">Basic classes and interfaces</a>
     62  @see <a href="../../../../../../html/developerdoc/api/data_api.basic.html">Basic classes and interfaces</a>
    6363*/
    6464public interface SystemData

  • trunk/src/core/net/sf/basedb/core/data/TextParameterValueData.java

    r3679 r3948  
    3333  @author Samuel
    3434  @version 2.0
    35   @see <a href="../../../../../../development/overview/data/parameters.html">Parameters overview</a>
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.parameters.html">Parameters overview</a>
    3636  @hibernate.subclass discriminator-value="6"
    3737  @base.modified $Date$

  • trunk/src/core/net/sf/basedb/core/data/TransformationData.java

    r3679 r3948  
    3434  @version 2.0
    3535  @see net.sf.basedb.core.Transformation
    36   @see <a href="../../../../../../development/overview/data/experiments.html">Experiments and analysis overview</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.experiments.html">Experiments and analysis overview</a>
    3737  @base.modified $Date$
    3838  @hibernate.class table="`Transformations`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/UsedQuantity.java

    r3679 r3948  
    3434  @author Nicklas
    3535  @version 2.0
    36   @see <a href="../../../../../../development/overview/data/biomaterial.html">Biomaterials overview</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.biomaterials.html">Biomaterials overview</a>
    3737  @base.modified $Date$
    3838*/

  • trunk/src/core/net/sf/basedb/core/data/UserClientSettingData.java

    r3679 r3948  
    2929  @author nicklas
    3030  @see net.sf.basedb.core.UserClientSetting
    31   @see <a href="../../../../../../development/overview/data/clients.html">Session and client overview</a>
     31  @see <a href="../../../../../../html/developerdoc/api/data_api.clients.html">Session and client overview</a>
    3232  @hibernate.class table="`UserClientSettings`" lazy="false"
    3333  @version 2.0

  • trunk/src/core/net/sf/basedb/core/data/UserData.java

    r3679 r3948  
    3737  @version 2.0
    3838  @see net.sf.basedb.core.User
    39   @see <a href="../../../../../../development/overview/data/authentication.html">Authentication overview</a>
     39  @see <a href="../../../../../../html/developerdoc/api/data_api.authentication.html">Authentication overview</a>
    4040  @base.modified $Date$
    4141  @hibernate.class table="`Users`" lazy="false"

  • trunk/src/core/net/sf/basedb/core/data/UserDefaultSettingData.java

    r3679 r3948  
    2929  @author nicklas
    3030  @see net.sf.basedb.core.UserDefaultSetting
    31   @see <a href="../../../../../../development/overview/data/clients.html">Session and client overview</a>
     31  @see <a href="../../../../../../html/developerdoc/api/data_api.clients.html">Session and client overview</a>
    3232  @hibernate.class table="`UserDefaultSettings`" lazy="false"
    3333  @version 2.0

  • trunk/src/core/net/sf/basedb/core/data/VersionedParameter.java

    r3675 r3948  
    3333  @author nicklas
    3434  @version 2.0
     35  @see <a href="../../../../../../html/developerdoc/api/data_api.plugins.html">Plugins</a>
    3536  @base.modified $Date$
    3637*/

  • trunk/src/core/net/sf/basedb/core/data/VirtualDbData.java

    r3679 r3948  
    3434  @version 2.0
    3535  @see net.sf.basedb.core.VirtualDb
    36   @see <a href="../../../../../../development/overview/data/experiments.html">Experiments and analysis overview</a>
     36  @see <a href="../../../../../../html/developerdoc/api/data_api.experiments.html">Experiments and analysis overview</a>
    3737  @base.modified $Date$
    3838  @hibernate.class table="`VirtualDbs`" lazy="true"

  • trunk/src/core/net/sf/basedb/core/data/WellData.java

    r3679 r3948  
    3131  @version 2.0
    3232  @see net.sf.basedb.core.Well
    33   @see <a href="../../../../../../development/overview/data/plates.html">Array LIMS - Plates overview</a>
     33  @see <a href="../../../../../../html/developerdoc/api/data_api.plates.html">Array LIMS - Plates overview</a>
    3434  @base.modified $Date$
    3535  @hibernate.class table="`Wells`" lazy="true"
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