Changeset 4005


Ignore:
Timestamp:
Nov 26, 2007, 4:00:38 PM (14 years ago)
Author:
Martin Svensson
Message:

Fixes #596 Read "Appendix: raw-data-types.xml reference"

File:
1 edited

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  • trunk/doc/src/docbook/appendix/raw_data_types.xml

    r4002 r4005  
    113113      doesn't. If it supports import, it may be locked to specific raw data type
    114114      or it may use any raw data type. Among the default platforms installed with
    115       BASE, the Affymetrix platform doesn't support importing data. The Generic platform
    116       supports importing to any raw data type.
     115      BASE, the Affymetrix platform doesn't support importing data while the Generic
     116      platform supports importing to any raw data type.
    117117    </para>
    118118   
     
    129129      you do it before the first initialisation of the database.
    130130      It is possible to change the configuration of an existing BASE installation but it
    131       requires manual updates to the database. Follow this procedure:
     131      requires manual updates to the database. Following procedure covers how to update:
    132132    </para>
    133133
     
    157157   
    158158    <tip>
    159       <title>Create a parallell installation</title>
     159      <title>Create a parallel installation</title>
    160160      <para>
    161       You can always create a new temporary parallell installation to check
     161      You can always create a new temporary parallel installation to check
    162162      what the table generated by installation script looks like. Compare the
    163163      new table to the existing one and make sure they match.
     
    183183  <bridgehead>Format of the raw-data-types.xml file</bridgehead>
    184184  <para>
    185     The <filename>raw-data-types.xml</filename> is an XML file.
    186     The following example will serve as a description of the format:
     185    The following example will serve as a description of the format used in
     186    <filename>raw-data-types.xml</filename>:
    187187  </para>
    188  
    189  
     188
     189
    190190  <programlisting language="xml">
    191191<![CDATA[
     
    268268          <entry>
    269269            A unique name of the raw data type. The name is usually used by client
    270             applications for disaplay.
     270            applications for display.
    271271          </entry>
    272272        </row>
     
    348348      Following the <sgmltag class="starttag">property</sgmltag> tags comes 0
    349349      or more <sgmltag class="starttag">intensity-formula</sgmltag> tags.
    350       Each one defines mathematical formulas that can be used to create
    351       calculate the intensity values from the raw data. In the Genepix, case
     350      Each one defines mathematical formulas that can be used to
     351      calculate the intensity values from the raw data. In the Genepix case,
    352352      there are several formulas which differs in the way background is
    353       subtracted from foregorund intensity values. For other raw data
     353      subtracted from foreground intensity values. For other raw data
    354354      types, the intensity formula may just copy one of the raw data values.
    355355    </para>
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