Changeset 4043
- Timestamp:
- Dec 6, 2007, 3:00:09 PM (15 years ago)
- Location:
- trunk
- Files:
-
- 3 edited
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doc/admin/plugin_configuration/coreplugins.html (modified) (2 diffs)
-
doc/src/docbook/appendix/coreplugins.xml (modified) (2 diffs)
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src/plugins/core/net/sf/basedb/plugins/CdfFileReporterImporter.java (modified) (2 diffs)
Legend:
- Unmodified
- Added
- Removed
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trunk/doc/admin/plugin_configuration/coreplugins.html
r3701 r4043 40 40 <div class="abstract"> 41 41 <p> 42 This document lists all core plugins and tools that are included in an 43 installation of the latest BASE 2 version. <br> There are 44 configuration examples, to download and import (v2.2 and 45 later), for those plugins that support configuration. Use the 46 right-click menu of the mouse to download these xml-files. 42 This document is mostly superseeded by the <a 43 href="http://base.thep.lu.se/chrome/site/latest/html/appendix/appendix.coreplugins.html">core 44 plugins list in the BASE 2 documentation</a>. Some tools are 45 still listed here. 47 46 </p> 48 47 49 <p>50 Contributed plug-ins are available at51 <a52 href=http://baseplugins.thep.lu.se>http://baseplugins.thep.lu.se</a>53 </p>54 55 48 <b>Contents</b> 56 49 <ol> 57 <li><a href="#types">Types</a>58 <ol type="a">59 <li><a href="#analyze">Analyze</a></li>60 <li><a href="#export">Export</a></li>61 <li><a href="#import">Import</a></li>62 <li><a href="#intensity">Intensity</a></li>63 <li><a href="#other">Other</a></li>64 </ol>65 </li>66 <li><a href="#config_packages">Configuration packages</a></li>67 50 <li><a href="#tools">Tools</a></li> 68 51 </ol> … … 74 57 </div> 75 58 <ol> 76 <li>77 <a name="types"></a>78 <h2>Types</h2>79 <ol type="a">80 <li>81 <a name="analyze"></a>82 <b>Analyze</b>83 <table class="listing">84 <tr>85 <th>Plugin name</th>86 <th>Configuration</th>87 <th>Works with</th>88 <th>Remark</th>89 </tr>90 <tr>91 <td>Base1PluginExecuter</td>92 <td><i>- N/A -</i></td>93 <td>BASE 2.2+</td>94 <td>Simulates the plug-in runner from Base 1.2.</td>95 </tr>96 <tr class="evenrow">97 <td>JEP extra value calculator</td>98 <td><i>Not needed</i></td>99 <td>BASE 2.1+</td>100 <td>Calculates extra values for a bioassay set.</td>101 </tr>102 <tr>103 <td>JEP filter plugin</td>104 <td><i>Not needed</i></td>105 <td>BASE 2.0RC2+</td>106 <td>Bioassay set filter. Expressions parsed with JEP.</td>107 </tr>108 <tr class="evenrow">109 <td>JEP intensity transformer</td>110 <td><i>Not needed</i></td>111 <td>BASE 2.1+</td>112 <td>Transforms the intensities of a bioassayset.</td>113 </tr>114 <tr>115 <td>Normalization: Lowess</td>116 <td><i>Not needed</i></td>117 <td>BASE 2.0RC1+</td>118 <td>Normalization using LOWESS algorithm.</td>119 </tr>120 <tr class="evenrow">121 <td>Normalization: Median ratio</td>122 <td><i>Not needed</i></td>123 <td>BASE 2.0RC1+</td>124 <td>Normalization based on median ratio.</td>125 </tr>126 </table>127 <div align="right"><a href="#top">top of this document</a></div>128 </li>129 <li>130 <a name="export"></a>131 <b>Export</b>132 <table class="listing">133 <tr>134 <th>Plugin name</th>135 <th>Configuration</th>136 <th>Works with</th>137 <th>Remark</th>138 </tr>139 <tr>140 <td>Bioassay set exporter</td>141 <td><i>Not needed</i></td>142 <td>BASE 2.1+</td>143 <td>Exports bioassay sets in different formats.</td>144 </tr>145 <tr class="evenrow">146 <td>Help texts exporter</td>147 <td><i>Not needed</i></td>148 <td>BASE 2.0RC2+</td>149 <td>Exports helptexts to a XML-file.</td>150 </tr>151 <tr>152 <td>Packed file exporter</td>153 <td><i>Not needed</i></td>154 <td>BASE 2.4</td>155 <td>156 Exports files and directories as an archive-file.157 </tr>158 <tr class="evenrow">159 <td>Plate mapping exporter</td>160 <td><i>Not needed</i></td>161 <td>BASE 2.0RC2+</td>162 <td>Exports plate mappings.</td>163 </tr>164 <tr>165 <td>Plugin configuration exporter</td>166 <td><i>Not needed</i></td>167 <td>BASE 2.1+</td>168 <td>Exports plugin configurations to a XML-file.</td>169 </tr>170 <tr class="evenrow">171 <td>Table exporter</td>172 <td><i>Not needed</i></td>173 <td>BASE 2.0RC1+</td>174 <td>Exports table listings in the web-interface.</td>175 </tr>176 </table>177 <div align="right"><a href="#top">top of this document</a></div>178 </li>179 180 <li>181 <a name="import"></a>182 <b>Import</b>183 <table class="listing">184 <tr>185 <th>Plugin name</th>186 <th>Configuration</th>187 <th>Works with</th>188 <th>Remark</th>189 </tr>190 191 <tr>192 <td>Help texts importer</td>193 <td><i>Not needed</i></td>194 <td>BASE 2.0RC2+</td>195 <td>Imports helptexts to the clients</td>196 </tr>197 198 <tr class="evenrow">199 <td rowspan="2" valign="middle">200 Plate importer201 </td>202 <td>203 <a href="import/plate_importer_384wells.xml">384 wells-plate</a>204 </td>205 <td>BASE 2.0RC1+</td>206 <td>Imports plates(384wells) from a simple flat file.</td>207 </tr>208 <tr class="evenrow">209 <td>210 <a href="import/plate_importer_96wells.xml">96 wells-plate</a>211 </td>212 <td>BASE 2.0RC1+</td>213 <td>Imports plates(96wells) from a simple flat file.</td>214 </tr>215 216 <tr>217 <td>Plate mapping importer</td>218 <td><i>Not needed</i></td>219 <td>BASE 2.0RC2+</td>220 <td>Imports plate mappings.</td>221 </tr>222 223 <tr class="evenrow">224 <td>Plugin configuration importer</td>225 <td><i>Not needed</i></td>226 <td>BASE 2.1+</td>227 <td>Imports pluginconfigurations from a xml-file.</td>228 </tr>229 230 <tr>231 <td>Print map importer</td>232 <td><i>Not needed</i></td>233 <td>BASE 2.0RC1+</td>234 <td>Imports arraydesign from a print map.</td>235 </tr>236 237 <tr class="evenrow">238 <td rowspan="2" valign="middle">239 Raw data importer240 </td>241 <td>242 <a href="import/raw_data_importer_genepix-cy3_cy5.xml">cy3/cy5 genepix</a>243 </td>244 <td>BASE 2.0RC1+</td>245 <td>Imports raw data from a text file (ch1=cy3).</td>246 </tr>247 <tr class="evenrow">248 <td>249 <a href="import/raw_data_importer_genepix-cy5_cy3.xml">cy5/cy3 genepix</a>250 </td>251 <td>BASE 2.0RC1+</td>252 <td>Imports rawdata from a text file (ch1=cy5).</td>253 </tr>254 255 <tr>256 <td rowspan="5" valign="middle">257 Reporter importer258 </td>259 <td>260 <a href="import/reporter_importer_96wells.xml">96 wells</a><br>261 </td>262 <td>BASE 2.0RC1+</td>263 <td>Imports reporters(96wells) from a file.</td>264 </tr>265 <tr>266 <td>267 <a href="import/reporter_importer_384wells.xml">384 wells</a><br>268 </td>269 <td>BASE 2.0RC1+</td>270 <td>Imports reporters(384wells) from a file.</td>271 </tr>272 <tr>273 <td>274 <a href="import/reporter_importer_genepix.xml">Genepix</a>275 </td>276 <td>BASE 2.0RC1+</td>277 <td>Imports reporters from a genepix file.</td>278 </tr>279 <tr>280 <td>281 <a href="import/reporter_importer_affymetrix.xml">Affymetrix I</a>282 </td>283 <td>BASE 2.0+</td>284 <td>Use for HG-U133_Plus_2 and MG_U74Av2. <br> Imports285 only minimum amount of information.</td>286 </tr>287 <tr>288 <td>289 <a href="import/reporter_importer_affymetrix2.xml">Affymetrix II</a>290 </td>291 <td>BASE 2.0+</td>292 <td>Use for HG-U133A. <br> Imports gene symbols and293 UniGene ID.</td>294 </tr>295 296 <tr class="evenrow">297 <td>Reporter map importer</td>298 <td>299 <table cellspacing="0">300 <tr>301 <td><a href="import/reporter_map_importer_genepix.xml">Genepix</a></td>302 </tr>303 </table>304 </td>305 <td>BASE 2.0RC1+</td>306 <td>Imports genepix features from a gpr- file</td>307 </tr>308 </table>309 <div align="right"><a href="#top">top of this document</a></div>310 </li>311 312 <li>313 <a name="intensity"></a>314 <b>Intensity</b>315 <table class="listing">316 <tr>317 <th>Plugin name</th>318 <th>Configuration</th>319 <th>Works with</th>320 <th>Remark</th>321 </tr>322 <tr>323 <td>Formula intensity calculator</td>324 <td><i>Not needed</i></td>325 <td>BASE 2.0RC1+</td>326 <td>Calculate intensities from raw data.</td>327 </tr>328 </table>329 <div align="right"><a href="#top">top of this document</a></div>330 </li>331 <li>332 <a name="other"></a>333 <b>Other</b>334 <table class="listing">335 <tr>336 <th>Plugin name</th>337 <th>Configuration</th>338 <th>Works with</th>339 <th>Remark</th>340 </tr>341 <tr>342 <td>Spot images creator</td>343 <td><i>Not needed</i></td>344 <td>BASE 2.0RC1+</td>345 <td>Converts a full-size image into jpg images for each spot.</td>346 </tr>347 <tr class="evenrow">348 <td>ZIP file unpacker</td>349 <td><i>Not needed</i></td>350 <td>BASE 2.1+</td>351 <td>Unpacks zip and jar file on the BASE2's file system.</td>352 </tr>353 </table>354 <div align="right"><a href="#top">top of this document</a></div>355 </li>356 </ol>357 </li>358 <li>359 <a name="config_packages"></a>360 <h2>Configuration packages</h2>361 <table class="listing">362 <tr>363 <th>Type</th>364 <th>Download</th>365 <th>Plugins</th>366 </tr>367 <tr>368 <td>Affymetrix</td>369 <td>download</td>370 <td> </td>371 </tr>372 <tr class="evenrow">373 <td>Genepix</td>374 <td>download</td>375 <td> </td>376 </tr>377 </table>378 <div align="right"><a href="#top">top of this document</a></div>379 </li>380 59 <li> 381 60 <a name="tools"></a> -
trunk/doc/src/docbook/appendix/coreplugins.xml
r3675 r4043 6 6 $Id$ 7 7 8 Copyright (C) 2007 Nicklas Nordborg8 Copyright (C) 2007 Jari Häkkinen, Nicklas Nordborg 9 9 10 10 This file is part of BASE - BioArray Software Environment. … … 29 29 <appendix id="appendix.coreplugins"> 30 30 <title>Core plug-ins shipped with BASE</title> 31 31 32 <para> 32 This document is only available in the old format. 33 See <ulink url="http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/coreplugins.html" 33 List of all plugins installed with a pristine BASE 34 installation. Some plugins must be configured before use, 35 requirements are listed below and configuration samples are given 36 for for plugins that supports/requires configurations. Use the 37 right-click menu of the mouse to download these XML files for 38 further import into BASE (see <xref 39 linkend="plugins.configuration.importexport" />). 40 </para> 41 42 <para> 43 Contributed plug-ins are available at <ulink 44 url="http://baseplugins.thep.lu.se" >http://baseplugins.thep.lu.se 45 </ulink>. These plugins are either developed outside the core team 46 or require external non-Java compilers and tools. These packages 47 are excluded from the BASE package to make the installation 48 process somewhat simpler. 49 </para> 50 51 <para> 52 Other non-plugin tools are listed in the old tools document at 53 <ulink 54 url="http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/coreplugins.html" 34 55 >http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/coreplugins.html</ulink>. 35 56 </para> 36 57 58 <sect1 id="coreplugins.analyze"> 59 <title>Analyse</title> 60 61 <variablelist> 62 <varlistentry> 63 <term>Base1PluginExecuter</term> 64 <listitem> 65 <para> 66 Simulates the plug-in runner from Base 1.2. 67 </para> 68 <para> 69 <emphasis>Since BASE 2.2, no configuration needed the 70 Base1PluginExecuter but may be required for the underlying 71 BASE 1.2 plugins.</emphasis> 72 </para> 73 </listitem> 74 </varlistentry> 75 76 <varlistentry> 77 <term>JEP extra value calculator</term> 78 <listitem> 79 <para> 80 Calculates extra values for a bioassay set. 81 </para> 82 <para> 83 <emphasis>Since BASE 2.1, no configuration needed.</emphasis> 84 </para> 85 </listitem> 86 </varlistentry> 87 88 <varlistentry> 89 <term>JEP filter plugin</term> 90 <listitem> 91 <para> 92 Bioassay set filter. Expressions parsed with JEP. 93 </para> 94 <para> 95 <emphasis>Since BASE 2.0, no configuration needed.</emphasis> 96 </para> 97 </listitem> 98 </varlistentry> 99 100 <varlistentry> 101 <term>JEP intensity transformer</term> 102 <listitem> 103 <para> 104 Transforms the intensities of a bioassayset. 105 </para> 106 <para> 107 <emphasis>Since BASE 2.1, no configuration needed.</emphasis> 108 </para> 109 </listitem> 110 </varlistentry> 111 112 <varlistentry> 113 <term>Normalisation: Lowess</term> 114 <listitem> 115 <para> 116 Normalisation using LOWESS algorithm. 117 </para> 118 <para> 119 <emphasis>Since BASE 2.0, no configuration needed.</emphasis> 120 </para> 121 </listitem> 122 </varlistentry> 123 124 <varlistentry> 125 <term>Normalisation: Median ratio</term> 126 <listitem> 127 <para> 128 Normalisation based on median ratio. 129 </para> 130 <para> 131 <emphasis>Since BASE 2.0, no configuration needed.</emphasis> 132 </para> 133 </listitem> 134 </varlistentry> 135 </variablelist> 136 137 </sect1> 138 139 <sect1 id="coreplugins.export"> 140 <title>Export</title> 141 142 <variablelist> 143 144 <varlistentry> 145 <term>Bioassay set exporter</term> 146 <listitem> 147 <para> 148 Exports bioassay sets in different formats. See plugin 149 definition in BASE for listing of supported formats. 150 </para> 151 <para> 152 <emphasis>Since BASE 2.1, no configuration needed.</emphasis> 153 </para> 154 </listitem> 155 </varlistentry> 156 157 <varlistentry> 158 <term>Help texts exporter</term> 159 <listitem> 160 <para> 161 Exports help texts to an XML file. 162 </para> 163 <para> 164 <emphasis>Since BASE 2.0, no configuration needed.</emphasis> 165 </para> 166 </listitem> 167 </varlistentry> 168 169 <varlistentry> 170 <term>Packed file exporter</term> 171 <listitem> 172 <para> 173 Exports files and directories as an archive-file. 174 </para> 175 <para> 176 <emphasis>Since BASE 2.4, no configuration needed.</emphasis> 177 </para> 178 </listitem> 179 </varlistentry> 180 181 <varlistentry> 182 <term>Plate mapping exporter</term> 183 <listitem> 184 <para> 185 Exports plate mappings. 186 </para> 187 <para> 188 <emphasis>Since BASE 2.0, no configuration needed.</emphasis> 189 </para> 190 </listitem> 191 </varlistentry> 192 193 <varlistentry> 194 <term>Plugin configuration exporter</term> 195 <listitem> 196 <para> 197 Exports plugin configurations to an XML file. 198 </para> 199 <para> 200 <emphasis>Since BASE 2.1, no configuration needed.</emphasis> 201 </para> 202 </listitem> 203 </varlistentry> 204 205 <varlistentry> 206 <term>Table exporter</term> 207 <listitem> 208 <para> 209 Exports table listings in the web-interface. 210 </para> 211 <para> 212 <emphasis>Since BASE 2.0, no configuration needed.</emphasis> 213 </para> 214 </listitem> 215 </varlistentry> 216 217 </variablelist> 218 219 </sect1> 220 221 <sect1 id="coreplugins.import"> 222 <title>Import</title> 223 224 <variablelist> 225 226 <varlistentry> 227 <term>Affymetrix CDF probeset importer</term> 228 <listitem> 229 <para> 230 This plug-in is used to import probesets (reporters in 231 BASE language) from an Affymetrix CDF file. It can be used 232 in import mode from the reporter list view and from the 233 array design view and in verification mode from the array 234 design view. The plugin can only set the name and ID of 235 the reporters, since the CDF file doesn't contains any 236 annotation information. Probesets already in BASE will not 237 be affected by the import. 238 </para> 239 <para> 240 <emphasis>Since BASE 2.4, no configuration needed.</emphasis> 241 </para> 242 </listitem> 243 </varlistentry> 244 245 <varlistentry> 246 <term>Annotation importer</term> 247 <listitem> 248 <para> 249 Imports annotation to any annotable item in BASE. 250 </para> 251 <para> 252 <emphasis>Since BASE 2.4, no configuration needed.</emphasis> 253 </para> 254 </listitem> 255 </varlistentry> 256 257 <varlistentry> 258 <term>Help texts importer</term> 259 <listitem> 260 <para> 261 Imports help texts from an XML file into BASE. 262 </para> 263 <para> 264 <emphasis>Since BASE 2.0, no configuration needed.</emphasis> 265 </para> 266 </listitem> 267 </varlistentry> 268 269 <varlistentry> 270 <term>Illumina raw data importer</term> 271 <listitem> 272 <para> 273 This plugin is used to import raw data from Illumina data 274 files. 275 </para> 276 <para> 277 <emphasis>Since BASE 2.4, no configuration needed.</emphasis> 278 </para> 279 </listitem> 280 </varlistentry> 281 282 <varlistentry> 283 <term>Plate importer</term> 284 <listitem> 285 <para> 286 Imports plates from a simple flat file. 287 </para> 288 <para> 289 <emphasis>Since BASE 2.0, available configurations: </emphasis> 290 <ulink url="http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/import/plate_importer_384wells.xml">384 291 wells-plate</ulink> and <ulink 292 url="http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/import/plate_importer_96wells.xml">96 wells-plate</ulink> 293 </para> 294 </listitem> 295 </varlistentry> 296 297 <varlistentry> 298 <term>Plate mapping importer</term> 299 <listitem> 300 <para> 301 Imports plate mappings. 302 </para> 303 <para> 304 <emphasis>BASE 2.0, no configuration needed.</emphasis> 305 </para> 306 </listitem> 307 </varlistentry> 308 309 310 <varlistentry> 311 <term>Plugin configuration importer</term> 312 <listitem> 313 <para> 314 Imports plugin configurations from an XML file. 315 </para> 316 <para> 317 <emphasis>Since BASE 2.1, no configuration needed.</emphasis> 318 </para> 319 </listitem> 320 </varlistentry> 321 322 <varlistentry> 323 <term>Print map importer</term> 324 <listitem> 325 <para> 326 Imports array designs from a print map. 327 </para> 328 <para> 329 <emphasis>Since BASE 2.0, no configuration needed.</emphasis> 330 </para> 331 </listitem> 332 </varlistentry> 333 334 <varlistentry> 335 <term>Raw data importer</term> 336 <listitem> 337 <para> 338 Imports raw data from a text file. 339 </para> 340 <para> 341 <emphasis>Since BASE 2.0, available configurations:</emphasis> 342 <ulink 343 url="http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/import/raw_data_importer_genepix-cy3_cy5.xml">cy3/cy5 344 GenePix</ulink> and <ulink 345 url="http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/import/raw_data_importer_genepix-cy5_cy3.xml">cy5/cy3 346 GenePix</ulink> 347 </para> 348 </listitem> 349 </varlistentry> 350 351 352 <varlistentry> 353 <term>Reporter importer</term> 354 <listitem> 355 <para> 356 Import reporter (probeset) information from a file. 357 </para> 358 <para> 359 <emphasis>Since BASE 2.0, available 360 configurations:</emphasis> 361 </para> 362 <para> 363 GenePix related <ulink 364 url="http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/import/reporter_importer_96wells.xml">96 365 wells</ulink>, <ulink 366 url="http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/import/reporter_importer_384wells.xml">384 367 wells</ulink>, and <ulink 368 url="http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/import/reporter_importer_genepix.xml">GenePix</ulink>. 369 </para> 370 <para> 371 Affymetrix related, these samples import a small amount of 372 information: <ulink 373 url="http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/import/reporter_importer_affymetrix.xml">HG-U133_Plus_2 374 and MG_U74Av2</ulink> and <ulink 375 url="http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/import/reporter_importer_affymetrix2.xml">HG-U133A</ulink>. 376 The samples may work on other Affymetrix chips, the listed 377 ones are tested and known to work. 378 </para> 379 </listitem> 380 </varlistentry> 381 382 <varlistentry> 383 <term>Reporter map importer</term> 384 <listitem> 385 <para> 386 Imports GenePix features from a gpr-file. 387 </para> 388 <para> 389 <emphasis>Since BASE 2.0, <ulink 390 url="http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/import/reporter_map_importer_genepix.xml">GenePix</ulink> 391 sample configuration available.</emphasis> 392 </para> 393 </listitem> 394 </varlistentry> 395 396 </variablelist> 397 398 </sect1> 399 400 <sect1 id="coreplugins.intensity"> 401 <title>Intensity</title> 402 403 <variablelist> 404 <varlistentry> 405 <term>Formula intensity calculator</term> 406 <listitem> 407 <para> 408 Calculate intensities from raw data. 409 </para> 410 <para> 411 <emphasis>Since BASE 2.0, no configuration needed.</emphasis> 412 </para> 413 </listitem> 414 </varlistentry> 415 416 </variablelist> 417 418 </sect1> 419 420 <sect1 id="coreplugins.other"> 421 <title>Other</title> 422 423 <variablelist> 424 425 <varlistentry> 426 <term>Spot images creator</term> 427 <listitem> 428 <para> 429 Converts a full-size image into JPEG images for each spot. 430 </para> 431 <para> 432 <emphasis>Since BASE 2.0, no configuration needed.</emphasis> 433 </para> 434 </listitem> 435 </varlistentry> 436 437 <varlistentry> 438 <term>TAR file unpacker</term> 439 <listitem> 440 <para> 441 Unpacks a tar file on the BASE file system. It also 442 supports TAR files compressed with GZIP or BZIP 443 algorithms. 444 </para> 445 <para> 446 <emphasis>Since BASE 2.1, no configuration needed.</emphasis> 447 </para> 448 </listitem> 449 </varlistentry> 450 451 <varlistentry> 452 <term>ZIP file unpacker</term> 453 <listitem> 454 <para> 455 Unpacks zip and jar file on the BASE2's file system. 456 </para> 457 <para> 458 <emphasis>Since BASE 2.1, no configuration needed.</emphasis> 459 </para> 460 </listitem> 461 </varlistentry> 462 463 </variablelist> 464 465 </sect1> 466 37 467 </appendix> 38 468 -
trunk/src/plugins/core/net/sf/basedb/plugins/CdfFileReporterImporter.java
r3820 r4043 2 2 $Id$ 3 3 4 Copyright (C) 2007 Nicklas Nordborg4 Copyright (C) 2007 Jari Häkkinen, Nicklas Nordborg 5 5 6 6 This file is part of BASE - BioArray Software Environment. … … 111 111 "and in verification mode from the array design view. " + 112 112 "The plug-in can only set the name and ID of the reporters, since the CDF file doesn't " + 113 "contains any annotation information.", 113 "contains any annotation information. Probesets already in BASE will not " + 114 "be affected by the import", 114 115 "2.4", 115 116 "2007, Base 2 development team",
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